Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30043X
(329 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 110 3e-25
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 110 3e-25
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 109 4e-25
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 107 1e-24
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 107 1e-24
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 107 1e-24
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 107 1e-24
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 107 1e-24
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 95 1e-20
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 94 2e-20
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 90 3e-19
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 71 2e-13
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 66 4e-12
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 55 1e-08
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 43 4e-05
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 38 0.002
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 37 0.003
At3g24210.1 68416.m03038 ankyrin repeat family protein contains ... 27 3.0
At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD) i... 27 4.0
At5g56690.1 68418.m07076 F-box family protein contains F-box dom... 26 7.0
At1g51640.1 68414.m05818 exocyst subunit EXO70 family protein co... 26 7.0
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 26 7.0
At5g03700.1 68418.m00330 PAN domain-containing protein contains ... 25 9.3
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 25 9.3
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 110 bits (264), Expect = 3e-25
Identities = 49/58 (84%), Positives = 55/58 (94%)
Frame = -2
Query: 325 SALAPSTIKIKIIAPSERKDSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 152
+ALAPS++KIK++AP ERK SVWIGGSILASLSTFQQMWISK EYDE+GPGIVHRKCF
Sbjct: 320 TALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF 377
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 110 bits (264), Expect = 3e-25
Identities = 49/58 (84%), Positives = 55/58 (94%)
Frame = -2
Query: 325 SALAPSTIKIKIIAPSERKDSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 152
+ALAPS++KIK++AP ERK SVWIGGSILASLSTFQQMWISK EYDE+GPGIVHRKCF
Sbjct: 320 TALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF 377
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 109 bits (262), Expect = 4e-25
Identities = 49/58 (84%), Positives = 54/58 (93%)
Frame = -2
Query: 325 SALAPSTIKIKIIAPSERKDSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 152
+ALAPS++KIK++AP ERK SVWIGGSILASLSTFQQMWISK EYDESGP IVHRKCF
Sbjct: 320 TALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKSEYDESGPSIVHRKCF 377
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 107 bits (258), Expect = 1e-24
Identities = 48/58 (82%), Positives = 54/58 (93%)
Frame = -2
Query: 325 SALAPSTIKIKIIAPSERKDSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 152
+ALAPS++KIK++AP ERK SVWIGGSILASLSTFQQMWI+K EYDESGP IVHRKCF
Sbjct: 320 TALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 107 bits (258), Expect = 1e-24
Identities = 48/58 (82%), Positives = 54/58 (93%)
Frame = -2
Query: 325 SALAPSTIKIKIIAPSERKDSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 152
+ALAPS++KIK++AP ERK SVWIGGSILASLSTFQQMWI+K EYDESGP IVHRKCF
Sbjct: 320 TALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 107 bits (258), Expect = 1e-24
Identities = 48/58 (82%), Positives = 54/58 (93%)
Frame = -2
Query: 325 SALAPSTIKIKIIAPSERKDSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 152
+ALAPS++KIK++AP ERK SVWIGGSILASLSTFQQMWI+K EYDESGP IVHRKCF
Sbjct: 320 TALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 107 bits (258), Expect = 1e-24
Identities = 48/58 (82%), Positives = 54/58 (93%)
Frame = -2
Query: 325 SALAPSTIKIKIIAPSERKDSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 152
+ALAPS++KIK++AP ERK SVWIGGSILASLSTFQQMWI+K EYDESGP IVHRKCF
Sbjct: 320 TALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 107 bits (258), Expect = 1e-24
Identities = 48/58 (82%), Positives = 54/58 (93%)
Frame = -2
Query: 325 SALAPSTIKIKIIAPSERKDSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 152
+ALAPS++KIK++AP ERK SVWIGGSILASLSTFQQMWI+K EYDESGP IVHRKCF
Sbjct: 320 TALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 94.7 bits (225), Expect = 1e-20
Identities = 41/58 (70%), Positives = 51/58 (87%)
Frame = -2
Query: 325 SALAPSTIKIKIIAPSERKDSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 152
+ALA + ++IKI+AP ERK SVWIGGSILASLST++QMWI+K EY+E+GP IVH KCF
Sbjct: 272 NALAAANMRIKIVAPPERKYSVWIGGSILASLSTYEQMWITKAEYEENGPAIVHTKCF 329
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 93.9 bits (223), Expect = 2e-20
Identities = 41/58 (70%), Positives = 49/58 (84%)
Frame = -2
Query: 325 SALAPSTIKIKIIAPSERKDSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 152
+ALAP ++KIK++AP ERK SVW+GGSILASLS+F MWI+K EYDE G IVHRKCF
Sbjct: 321 NALAPPSMKIKVVAPPERKYSVWVGGSILASLSSFAPMWITKAEYDEQGGAIVHRKCF 378
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 90.2 bits (214), Expect = 3e-19
Identities = 38/57 (66%), Positives = 48/57 (84%)
Frame = -2
Query: 325 SALAPSTIKIKIIAPSERKDSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKC 155
+AL PS++K+K++ P E + SVWIGGSILASLSTF QMWI+K+EY+E G IVHRKC
Sbjct: 309 NALVPSSMKVKVVVPPESECSVWIGGSILASLSTFHQMWITKDEYEEHGAAIVHRKC 365
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 70.5 bits (165), Expect = 2e-13
Identities = 31/57 (54%), Positives = 42/57 (73%), Gaps = 3/57 (5%)
Frame = -2
Query: 316 APSTIKIKIIAP---SERKDSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKC 155
+P + ++K++A +ER+ SVWIGGSILASL +FQQMW SK EY+E G + RKC
Sbjct: 384 SPHSARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKC 440
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 66.5 bits (155), Expect = 4e-12
Identities = 31/42 (73%), Positives = 38/42 (90%)
Frame = -2
Query: 325 SALAPSTIKIKIIAPSERKDSVWIGGSILASLSTFQQMWISK 200
+ALAPS++KIK++AP ERK SVWIGGSILASLSTFQQ+ I +
Sbjct: 320 TALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVKIDQ 361
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 54.8 bits (126), Expect = 1e-08
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = -2
Query: 325 SALAPSTIKIKIIAPSER-KDSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 152
SA+ P+ +K P S W+GG+ILA + Q ++K +YDE+GP +VHRKCF
Sbjct: 305 SAIRPTLVKPPEYMPENLGMYSAWVGGAILAKVVFPQNQHVTKADYDETGPSVVHRKCF 363
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 43.2 bits (97), Expect = 4e-05
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = -2
Query: 319 LAPSTIKIKIIAPSERKDSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 152
L P +KI + VW GGS+LAS F+ M ++K EY+E G R+ F
Sbjct: 365 LVPDHFDVKITTQEDPILGVWRGGSLLASSPDFESMCVTKAEYEELGSARCRRRFF 420
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = -2
Query: 304 IKIKIIAPSERKDSVWIGGSILASLSTFQQMWISKEEYDESGPGI 170
+++ +++ ++ +VW GGS+L+S F +KEEY+E G I
Sbjct: 372 VEVNVVSHPVQRFAVWFGGSVLSSTPEFFASCRTKEEYEEYGASI 416
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 37.1 bits (82), Expect = 0.003
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = -2
Query: 304 IKIKIIAPSERKDSVWIGGSILASL-STFQQMWISKEEYDESG 179
++++I P RK V++GG++LA + + WI++E+Y E G
Sbjct: 337 LRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWINREDYMEEG 379
>At3g24210.1 68416.m03038 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 607
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 323 RPSALDHQDQDHSSLREKGLRMDRWIHPGIPV 228
+P AL H S +KGLR W+ P P+
Sbjct: 429 KPKALVSDKTRHESEYKKGLRPVLWLSPNFPL 460
>At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD)
identical to Homeobox protein LUMINIDEPENDENS
(Swiss-Prot:Q38796) [Arabidopsis thaliana]
Length = 953
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 232 GMPGWIHRSIRSPFSRR 282
GM GW IR+PFSR+
Sbjct: 762 GMSGWGQEGIRNPFSRQ 778
>At5g56690.1 68418.m07076 F-box family protein contains F-box domain
Pfam:PF00646
Length = 402
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -2
Query: 313 PSTIKIKIIAPSERKDSVWIGGSILASLSTFQQMWISKEEYDE 185
P + +KI+A K V I S+L+ F MW+ K +YD+
Sbjct: 8 PDDLLVKILAFLPTK--VAISTSVLSKQWRFLWMWLPKLKYDD 48
>At1g51640.1 68414.m05818 exocyst subunit EXO70 family protein
contains Pfam domain PF03081: Exo70 exocyst complex
subunit contains Pfam domain PF03081: Exo70 exocyst
complex subunit;
Length = 660
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 201 FEIHICWKVDRDARMDPPIHTESFLSEGAMILILMVEGARAEK 329
FE +C+ V D D P+ ++ ++IL L+ G+R K
Sbjct: 270 FESKLCYDVFEDIGEDVPLRCFGEIASNSVILQLLRFGSRISK 312
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 30 MALD*MFSSQVSLGTTY*RLRSELGRAQHHTAPGSR 137
+++D FSS S G +Y R S GR+Q +P R
Sbjct: 166 VSVDWAFSSGPSGGESYRRKNSRYGRSQRSRSPRRR 201
>At5g03700.1 68418.m00330 PAN domain-containing protein contains
Pfam profile: PF00024 PAN domain
Length = 482
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 2 NFTINYIRIDGVRLDVQFSGITRYNVLTVAFRTRTSTTPHST 127
NF+ ++R++G RL + + + L V TR+++ H T
Sbjct: 63 NFSFGFLRVNGSRLSLAVTHPNLTDPLWVLDPTRSASWSHKT 104
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 317 SALDHQDQDHSSLREKGLRMDRWIHPGIPVHLPADVDLEGG 195
S + DQ+H S ++ LR D+ ++ I H+ ++GG
Sbjct: 36 SGVSSDDQNHHSRIDQVLRHDQGLYSKIGSHVARSDGVDGG 76
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,637,714
Number of Sequences: 28952
Number of extensions: 123836
Number of successful extensions: 336
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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