Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0122
         (608 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20140.1 68418.m02397 SOUL heme-binding family protein contai...    29   1.8  
At3g26990.1 68416.m03377 expressed protein contains Pfam domain,...    29   3.2  
At5g44350.1 68418.m05431 ethylene-responsive nuclear protein -re...    28   4.2  
At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin fa...    28   4.2  
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to...    28   4.2  
At4g29170.1 68417.m04174 Mnd1 family protein contains Pfam PF039...    28   5.6  
At1g74200.1 68414.m08594 leucine-rich repeat family protein cont...    27   7.4  
At5g52280.1 68418.m06488 protein transport protein-related low s...    27   9.7  
At2g43990.1 68415.m05470 expressed protein                             27   9.7  

>At5g20140.1 68418.m02397 SOUL heme-binding family protein contains
           PFam profile PF04832: SOUL heme-binding protein
          Length = 378

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
 Frame = -3

Query: 210 FYLVGRWLSIISFPPLLWDPHIIFLQLD------EDSVLCSHYE 97
           + +  RW  ++ F PL W P ++F  L       E +  CSH +
Sbjct: 131 YEITTRWTMVMKFIPLPWKPELVFTGLSIMEVNPETNKFCSHLD 174


>At3g26990.1 68416.m03377 expressed protein contains Pfam domain,
           PF04818: Protein of unknown function, DUF618
          Length = 513

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +3

Query: 108 SITQNLRRAAEKLYEDPIEEVERRLLIASGLPNRTGDQIRALID 239
           S+  +LR A ++  E  +E+V   L IA    +RTGD  R L+D
Sbjct: 239 SLISHLREALQE-QELKLEQVRNHLQIARFQSDRTGDLCRQLLD 281


>At5g44350.1 68418.m05431 ethylene-responsive nuclear protein
           -related contains weak similarity to ethylene-regulated
           nuclear protein ERT2 [Arabidopsis thaliana]
           gi|2765442|emb|CAA75349
          Length = 334

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 272 RMCDSSNNSTKDKNVISKYFTRAADESLEDFKETK--RIITCPK 397
           R+   SNN+ KDKN I++       E +E F ET+  + I CP+
Sbjct: 160 RVFTRSNNTDKDKNAIAR-------EKIETFDETRVPKAIPCPE 196


>At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin
           family protein contains Pfam profile PF01190: Pollen
           proteins Ole e I family
          Length = 401

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -2

Query: 88  PHPAPINKLPIAIALPNFPA---GVPDI 14
           P+P+P+  LPI   LPN P     VPD+
Sbjct: 193 PNPSPLPNLPIVPPLPNLPVPKLPVPDL 220


>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
           homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
           thaliana]
          Length = 723

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 281 DSSNNSTKDKNVISKYFTRAADESLEDFKETKRII 385
           D+  +  +D +     FT A+DE +E FKE K I+
Sbjct: 392 DNEESENEDGSSDETEFTSASDEMIESFKEGKDIM 426


>At4g29170.1 68417.m04174 Mnd1 family protein contains Pfam PF03962:
           Mnd1 family
          Length = 230

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +2

Query: 389 CPKIIKPARKQRNNGKRICKQKDIRTSLKRKNNELIEFSKN--XIMFARRQGIDVGFQN 559
           C  + K   +     + + + KDI    K   NE+++F+ N    + A+R  I+V  Q+
Sbjct: 106 CEALKKGREESEERTEALTQLKDIEKKHKDLKNEMVQFADNDPATLEAKRNAIEVAHQS 164


>At1g74200.1 68414.m08594 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to disease
           resistance protein [Lycopersicon esculentum]
           gi|3894383|gb|AAC78591  disease resistance protein
           [Lycopersicon esculentum]       gi|3894383|gb|AAC78591
          Length = 302

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -2

Query: 418 FPGRL-YNFRAGNDSLSFFKIFKTLICCSREIFTYHILVFSAIITTITHSLFIRPMGRSY 242
           F G+L  +F  G DSL   K+    +  S E+F      FS +  ++ ++LF   +GR  
Sbjct: 32  FHGKLPRSFLKGCDSLIVLKLSHKKL--SEEVFPEASNFFSILELSMDNNLFTGKIGRGL 89

Query: 241 PSIRARI 221
            S+R+ I
Sbjct: 90  QSLRSLI 96


>At5g52280.1 68418.m06488 protein transport protein-related low
           similarity to  SP|P25386 Intracellular protein transport
           protein USO1 {Saccharomyces cerevisiae}
          Length = 853

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +2

Query: 347 ESLEDFKETKRIITCPKIIKPARKQRNNGKRICKQKDIRTSLKRKNNEL 493
           E + D    ++ +T    ++  R Q +N   I   +D+   L++KNNE+
Sbjct: 352 EEIRDELSCEKDLTSNLKLQLQRTQESNSNLILAVRDLNEMLEQKNNEI 400


>At2g43990.1 68415.m05470 expressed protein
          Length = 632

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
 Frame = +2

Query: 302 KDKNVISKYFTRAADESLEDFKETKRIITCPKIIKPARKQRN--NGKR-ICK--QKDIRT 466
           K   V+SK   R    SLE+ K    +   P ++K  R + N  +GKR  CK   K  + 
Sbjct: 106 KSAPVVSKPLIRKKPSSLEEVKLKSTLTEKPNLLKSQRCKTNPVSGKRPTCKITMKPEKV 165

Query: 467 SLKRKNNEL 493
           S+ +K + +
Sbjct: 166 SVLKKQSSV 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,743,474
Number of Sequences: 28952
Number of extensions: 223970
Number of successful extensions: 594
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)