Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0085
(797 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 87 1e-17
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 87 1e-17
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 40 0.001
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 38 0.006
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 38 0.006
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 38 0.006
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 38 0.008
At3g55580.1 68416.m06171 regulator of chromosome condensation (R... 30 2.0
At4g30870.1 68417.m04383 repair endonuclease family protein cont... 29 2.7
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 29 4.7
At2g27320.1 68415.m03284 hypothetical protein contains Pfam pr... 28 8.3
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 87.4 bits (207), Expect = 1e-17
Identities = 40/54 (74%), Positives = 46/54 (85%)
Frame = +1
Query: 529 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKNMHML 690
+ + LVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+K L
Sbjct: 140 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCL 193
Score = 81.4 bits (192), Expect = 6e-16
Identities = 36/55 (65%), Positives = 44/55 (80%)
Frame = +3
Query: 237 LVQICKWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 401
L + KWPK IR+QRQK +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 43 LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPE 97
Score = 45.2 bits (102), Expect = 5e-05
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +1
Query: 172 NPLFEKRPKNFAIGQGIQPTRDLSRFVSGP-SISASSARRL 291
NPLFE+RPK F IG + P +DLSR++ P SI +R+
Sbjct: 21 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 61
Score = 33.9 bits (74), Expect = 0.13
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +2
Query: 593 CQRYAVKWVYHTALSRASPASVHLYTARTCTCLALTNVESGDRASSRRSLEAIKTNF 763
C++ V + SR A VH +T +CL LT V++ D+ + LEAIK NF
Sbjct: 165 CRKMEVPYCIVKGKSRLG-AVVH---QKTASCLCLTTVKNEDKLEFSKILEAIKANF 217
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 87.0 bits (206), Expect = 1e-17
Identities = 39/49 (79%), Positives = 45/49 (91%)
Frame = +1
Query: 529 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRK 675
+ + LVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+K
Sbjct: 139 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQK 187
Score = 81.8 bits (193), Expect = 5e-16
Identities = 37/55 (67%), Positives = 44/55 (80%)
Frame = +3
Query: 237 LVQICKWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 401
L + KWPK IR+QRQK +L++RLKVPP +NQFT+TLDK A LFKIL KYRPE
Sbjct: 42 LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPE 96
Score = 45.2 bits (102), Expect = 5e-05
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +1
Query: 172 NPLFEKRPKNFAIGQGIQPTRDLSRFVSGP-SISASSARRL 291
NPLFE+RPK F IG + P +DLSR++ P SI +R+
Sbjct: 20 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 60
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +2
Query: 593 CQRYAVKWVYHTALSRASPASVHLYTARTCTCLALTNVESGDRASSRRSLEAIKTNF 763
C++ V + SR A VH +T L LT V++ D+ + LEAIK NF
Sbjct: 164 CRKMEVPYCIVKGKSRLG-AVVH---QKTAAALCLTTVKNEDKLEFSKILEAIKANF 216
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +1
Query: 526 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 654
R + L VIA ++ PI+++ LP LC + GVPY V K L
Sbjct: 63 RRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDL 105
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +1
Query: 547 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 657
VV+A D +P+E++L LP L VPY V K LG
Sbjct: 86 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 122
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +1
Query: 547 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 657
VV+A D +P+E++L LP L VPY V K LG
Sbjct: 54 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +1
Query: 547 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 657
VV+A D +P+E++L LP L VPY V K LG
Sbjct: 54 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 37.9 bits (84), Expect = 0.008
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 547 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 657
+V+A D +P+E++L LP L VPY V K LG
Sbjct: 54 IVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>At3g55580.1 68416.m06171 regulator of chromosome condensation
(RCC1) family protein UVB-resistance protein UVR8,
Arabidopsis thaliana, EMBL:AF130441; contains Pfam
PF00415: Regulator of chromosome condensation (RCC1)
domain
Length = 488
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 285 SGAGCGYTWATYKSGQVTSW 226
SG GCG+ AT +SG++ +W
Sbjct: 69 SGGGCGFAMATAESGKLITW 88
>At4g30870.1 68417.m04383 repair endonuclease family protein
contains Pfam PF02732 : ERCC4 domain; similar to repair
endonuclease (TIGR:At5g41150) [Arabidopsis thaliana]
Length = 661
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/46 (43%), Positives = 22/46 (47%)
Frame = +2
Query: 605 AVKWVYHTALSRASPASVHLYTARTCTCLALTNVESGDRASSRRSL 742
AV +Y T LS AS S HLY +C T SGDR S L
Sbjct: 503 AVLDMYPTLLSLASAYS-HLYQESSCDWFRSTLSSSGDRVSDHDQL 547
>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
family protein (MSS2) similar to SMC-related protein MSS2
[Arabidopsis thaliana] GI:9965743; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1053
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -1
Query: 497 SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 339
+ G+ P+ R +F + +S QP P CF L P L LE + +CS++ +
Sbjct: 971 NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021
>At2g27320.1 68415.m03284 hypothetical protein contains Pfam
profile PF03080: Arabidopsis proteins of unknown
function
Length = 339
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 706 GVW*PRFFSKVVGSHQDELSTSANEGAS 789
G W R F +VVG EL T N+GAS
Sbjct: 246 GNWILRIFDRVVGYWPKELFTHLNKGAS 273
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,787,236
Number of Sequences: 28952
Number of extensions: 304346
Number of successful extensions: 889
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -