Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0079
(271 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso... 64 2e-11
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B) 62 4e-11
At1g21740.1 68414.m02721 expressed protein contains Pfam domains... 30 0.24
At5g48160.1 68418.m05949 tropomyosin-related contains weak simil... 26 3.9
At3g53920.1 68416.m05957 RNA polymerase sigma subunit SigC (sigC... 25 5.2
At4g35240.1 68417.m05009 expressed protein contains Pfam domains... 25 9.0
At3g47180.1 68416.m05123 zinc finger (C3HC4-type RING finger) fa... 25 9.0
At1g77500.1 68414.m09025 expressed protein contains Pfam domains... 25 9.0
>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
protein S6, Arabidopsis thaliana, PID:g2662469
Length = 250
Score = 63.7 bits (148), Expect = 2e-11
Identities = 27/48 (56%), Positives = 34/48 (70%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKXY 167
MK NV+ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+K Y
Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGY 48
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/25 (72%), Positives = 20/25 (80%)
Frame = +1
Query: 169 VXRVAGGNDKQGFPMKQGVLTNSRV 243
V ++ GG DKQGFPMKQGVLT RV
Sbjct: 49 VFKIKGGCDKQGFPMKQGVLTPGRV 73
>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
Length = 249
Score = 62.5 bits (145), Expect = 4e-11
Identities = 26/48 (54%), Positives = 34/48 (70%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKXY 167
MK NV+ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+K Y
Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGY 48
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/25 (72%), Positives = 20/25 (80%)
Frame = +1
Query: 169 VXRVAGGNDKQGFPMKQGVLTNSRV 243
V ++ GG DKQGFPMKQGVLT RV
Sbjct: 49 VFKIMGGCDKQGFPMKQGVLTPGRV 73
>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 953
Score = 29.9 bits (64), Expect = 0.24
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 9 GLTAVMKLNVSYPATGCQKLF-EVVDEHKLRIFYEKRMGAEVEADQLGDE 155
GLT + + +KL+ EV DE KLR+ YE++ + D LG E
Sbjct: 585 GLTGNLSATLEQLYAWEKKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634
>At5g48160.1 68418.m05949 tropomyosin-related contains weak
similarity to Tropomyosin, muscle (Allergen Ani s 3).
(Swiss-Prot:Q9NAS5) [Anisakis simplex]
Length = 574
Score = 25.8 bits (54), Expect = 3.9
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 72 EVVDEHKLRIFYEKRMGAEVEADQLGDEWKXYGXSCRWRQRQARIPDE 215
E+V E K+R+F + RM E +L D+ K RQ++ DE
Sbjct: 405 EIVAEEKMRMFKKARMALETCDRELEDKAKEVSELKAERQKKKLQIDE 452
>At3g53920.1 68416.m05957 RNA polymerase sigma subunit SigC (sigC) /
sigma factor 3 (SIG3) identical to sigma factor SigC
[Arabidopsis thaliana] GI:5478585, sigma factor 3 (SIG3)
[Arabidopsis thaliana] GI:2353175, plastid RNA
polymerase sigma-subunit [Arabidopsis thaliana]
GI:2398853; contains Pfam profiles PF04545: Sigma-70,
region 4, PF04539: Sigma-70 region 3, PF04542: Sigma-70
region 2
Length = 571
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 141 DQPLLRRPCAFRKRXEACARPPLRTTSGIPL 49
D P +RRP +RK+ E +R ++G+ +
Sbjct: 257 DVPRVRRPPKYRKKRERISRNETEMSTGVKI 287
>At4g35240.1 68417.m05009 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 828
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 60 QKLF-EVVDEHKLRIFYEKRMGAEVEADQLGDE 155
+KL+ EV E KLR+ +EK++ DQ G E
Sbjct: 498 KKLYHEVKAEEKLRLAHEKKLRKLKRLDQRGAE 530
>At3g47180.1 68416.m05123 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 210
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 234 VCQDPLFHRESLLVVAASDTXYHXPSI 154
VCQ RESL+V+ D YH I
Sbjct: 164 VCQMEFEERESLVVLRPCDHPYHSECI 190
>At1g77500.1 68414.m09025 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 879
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 60 QKLF-EVVDEHKLRIFYEKRMGAEVEADQLGDE 155
+KL+ EV DE KLR YE++ + D G E
Sbjct: 554 KKLYKEVKDEEKLRAIYEEKCRRLKKMDSHGAE 586
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,578,420
Number of Sequences: 28952
Number of extensions: 88476
Number of successful extensions: 219
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 12,070,560
effective HSP length: 68
effective length of database: 10,101,824
effective search space used: 212138304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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