Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0077
         (785 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09790.1 68414.m01098 phytochelatin synthetase-related contai...    30   1.5  
At2g36640.1 68415.m04494 late embryogenesis abundant protein (EC...    29   3.5  
At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family...    29   4.6  
At5g16560.1 68418.m01938 myb family transcription factor (KAN1) ...    29   4.6  
At3g17630.1 68416.m02252 cation/hydrogen exchanger, putative (CH...    29   4.6  
At1g79800.1 68414.m09316 plastocyanin-like domain-containing pro...    29   4.6  
At1g73700.1 68414.m08534 MATE efflux family protein similar to r...    29   4.6  
At1g70280.2 68414.m08086 NHL repeat-containing protein contains ...    29   4.6  
At1g70280.1 68414.m08085 NHL repeat-containing protein contains ...    29   4.6  
At5g51760.1 68418.m06418 protein phosphatase 2C, putative / PP2C...    28   6.1  
At5g19810.1 68418.m02354 proline-rich extensin-like family prote...    28   6.1  
At3g22845.1 68416.m02879 emp24/gp25L/p24 protein-related contain...    28   6.1  

>At1g09790.1 68414.m01098 phytochelatin synthetase-related contains
           Pfam profile PF04833: Phytochelatin synthetase-like
           conserved region
          Length = 454

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +1

Query: 283 YDDFRL-PNGKICTSESEFGNAYRLARSCPQVQAPEHSHHQLHDASLPPACEQ 438
           Y  FR  P+ K C S S F   Y+    CP       S H + D  LPP  EQ
Sbjct: 221 YSQFRSSPSPKCCVSLSAF--YYQNIVPCPTCSCGCSSSHCVKDGELPPYLEQ 271


>At2g36640.1 68415.m04494 late embryogenesis abundant protein
           (ECP63) / LEA protein nearly identical to to LEA protein
           in group 3 [Arabidopsis thaliana] GI:1526424; contains
           Pfam profile PF02987: Late embryogenesis abundant
           protein
          Length = 448

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/61 (34%), Positives = 26/61 (42%)
 Frame = +2

Query: 221 EANGFYLGKLRVFSETVTTSLTMTSGYLMERSALRKASSVTRTVWPAAVHRCKXPNTPIT 400
           EA G   G L   +E + + LTM S  + E  A R+     RTV    V   K P    T
Sbjct: 360 EAKGTIFGALGNVTEAIKSKLTMPSDIVEETRAAREHGGTGRTVVEVKVEDSK-PGKVAT 418

Query: 401 S 403
           S
Sbjct: 419 S 419


>At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 162

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 383 PNTPITSCTMHPSPPPANRSSGEY 454
           P+TP T+C   PSPP +   S  Y
Sbjct: 58  PSTPTTACPPPPSPPSSGGGSSYY 81


>At5g16560.1 68418.m01938 myb family transcription factor (KAN1)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to cDNA GARP-like putative
           transcription factor KANADI1 (KAN1) GI:15723590
          Length = 403

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 313 ICTSESEFGNAYRLARSCPQVQ-APEHSHH 399
           I  S S + NAYR  +S P+++  P H HH
Sbjct: 147 ILNSSSGYNNAYRSLQSSPRLKGVPLHHHH 176


>At3g17630.1 68416.m02252 cation/hydrogen exchanger, putative
           (CHX19) similar to putative Na+/H+-exchanging protein
           GB:CAA23036 from [Arabidopsis thaliana]; monovalent
           cation:proton antiporter family 2 (CPA2) member,
           PMID:11500563
          Length = 857

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 642 LMQISRGTSGDSYEFKVPNKQDDIIYQLRQLNPC 743
           LM   RG    +YE +V   +DDII  L+ ++ C
Sbjct: 749 LMNDPRGNESLAYEERVVESKDDIIATLKSMSKC 782


>At1g79800.1 68414.m09316 plastocyanin-like domain-containing
           protein
          Length = 192

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 388 HSHHQLHDASLPPACEQVFGGISPLRTLS 474
           H HH  HDAS+PP+   +    SP  + S
Sbjct: 136 HQHHD-HDASMPPSMSPLSNSASPYASAS 163


>At1g73700.1 68414.m08534 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile: PF01554
           uncharacterized membrane protein family
          Length = 476

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 70  WTGYSKRSFQRIPDHQKGCVRFPS 141
           WTG+SK +FQ + D  K  + FPS
Sbjct: 235 WTGFSKEAFQELYDFSK--IAFPS 256


>At1g70280.2 68414.m08086 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 509

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 277 EPYDDFRLPNGKICTSESEFGNAYRLARSCPQVQAP 384
           EPY    LPNG++   +SE  N Y+++ S      P
Sbjct: 84  EPYSIEVLPNGELLILDSENSNIYKISSSLSLYSRP 119


>At1g70280.1 68414.m08085 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 447

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 277 EPYDDFRLPNGKICTSESEFGNAYRLARSCPQVQAP 384
           EPY    LPNG++   +SE  N Y+++ S      P
Sbjct: 22  EPYSIEVLPNGELLILDSENSNIYKISSSLSLYSRP 57


>At5g51760.1 68418.m06418 protein phosphatase 2C, putative / PP2C,
           putative contains PF00481: Protein phosphatase 2C
           domain; similar to protein phosphatase 2C (GI:10432446)
           [Nicotiana tabacum]
          Length = 416

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 58  IERKWTGYSKRSFQRIPD 111
           +ERKW G  KRSF+R+ +
Sbjct: 188 VERKWRGVMKRSFKRMDE 205


>At5g19810.1 68418.m02354 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 249

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 359 AAVHRCKXPNTPITSCTMHPSPPPANRSSGEYRRSGP 469
           AA ++   P  P     ++P PPP  +++  Y+RS P
Sbjct: 187 AAYYKKTPPPPPYKYGRVYPPPPPPPQAARSYKRSPP 223


>At3g22845.1 68416.m02879 emp24/gp25L/p24 protein-related contains
           weak similarity to transmembrane protein (GI:1212965)
           [Homo sapiens]
          Length = 214

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 642 LMQISRGTSGDSYEFKVP 695
           ++Q  +GTSGD +EFK P
Sbjct: 80  IVQTLKGTSGDKFEFKAP 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,738,034
Number of Sequences: 28952
Number of extensions: 387369
Number of successful extensions: 1265
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)