Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0070
(765 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 126 2e-29
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 125 3e-29
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 123 2e-28
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 116 2e-26
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 104 6e-23
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 80 1e-15
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 80 1e-15
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 78 7e-15
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 78 7e-15
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 72 4e-13
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 67 1e-11
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 67 1e-11
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 67 1e-11
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 67 1e-11
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 67 1e-11
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 66 3e-11
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 66 3e-11
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 65 4e-11
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 64 7e-11
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 63 2e-10
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 63 2e-10
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 63 2e-10
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 61 7e-10
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 61 9e-10
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 60 2e-09
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 60 2e-09
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 59 3e-09
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 59 4e-09
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 58 5e-09
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 58 8e-09
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 56 2e-08
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 56 2e-08
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 56 2e-08
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 56 2e-08
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 56 2e-08
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 56 3e-08
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 55 6e-08
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 55 6e-08
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 55 6e-08
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 54 8e-08
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 54 1e-07
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 54 1e-07
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 54 1e-07
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 54 1e-07
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 53 2e-07
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 53 2e-07
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 52 3e-07
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 52 4e-07
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 52 4e-07
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 52 6e-07
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 52 6e-07
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 51 1e-06
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 51 1e-06
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 50 2e-06
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 50 2e-06
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 49 4e-06
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 48 5e-06
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 48 7e-06
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 46 4e-05
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 43 3e-04
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 38 0.007
At2g28600.1 68415.m03476 expressed protein 38 0.007
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi... 33 0.28
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 32 0.36
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 32 0.36
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 29 2.6
At3g10020.1 68416.m01202 expressed protein 29 2.6
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa... 29 3.4
At1g15140.3 68414.m01810 oxidoreductase NAD-binding domain-conta... 29 4.5
At1g15140.2 68414.m01809 oxidoreductase NAD-binding domain-conta... 29 4.5
At1g15140.1 68414.m01808 oxidoreductase NAD-binding domain-conta... 29 4.5
At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containi... 28 5.9
At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi... 28 7.8
At1g76010.1 68414.m08825 expressed protein 28 7.8
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 126 bits (304), Expect = 2e-29
Identities = 59/83 (71%), Positives = 71/83 (85%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
DVI QAQSGTGKTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L K
Sbjct: 78 DVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVK 137
Query: 440 CHACIGGTNVREDIRQLESGVHV 508
HAC+GGT+VRED R L++GVHV
Sbjct: 138 VHACVGGTSVREDQRILQAGVHV 160
Score = 108 bits (260), Expect = 3e-24
Identities = 49/77 (63%), Positives = 64/77 (83%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV+DM+ R++L A+ IK+FVLDEADEMLSRGFKDQI+D+F++L +QV + SAT
Sbjct: 162 VGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSAT 221
Query: 691 MPDDVLEVSRCFMRDPV 741
MP + LE++R FM PV
Sbjct: 222 MPPEALEITRKFMSKPV 238
Score = 66.1 bits (154), Expect = 2e-11
Identities = 30/41 (73%), Positives = 34/41 (82%)
Frame = +3
Query: 123 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 245
T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVP 72
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 125 bits (302), Expect = 3e-29
Identities = 59/83 (71%), Positives = 70/83 (84%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
DVI QAQSGTGKTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L K
Sbjct: 80 DVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVK 139
Query: 440 CHACIGGTNVREDIRQLESGVHV 508
AC+GGT+VRED R L+SGVHV
Sbjct: 140 AQACVGGTSVREDQRVLQSGVHV 162
Score = 109 bits (261), Expect = 3e-24
Identities = 49/77 (63%), Positives = 65/77 (84%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV+D++ R++L A+ IK+FVLDEADEMLSRGFKDQI+D+F++L + VQV + SAT
Sbjct: 164 VGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSAT 223
Query: 691 MPDDVLEVSRCFMRDPV 741
MP + LE++R FM PV
Sbjct: 224 MPPEALEITRKFMNKPV 240
Score = 66.1 bits (154), Expect = 2e-11
Identities = 29/44 (65%), Positives = 37/44 (84%)
Frame = +3
Query: 114 TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 245
T T++D+V ++FD M L+ +LLRGIYAYGFEKPSAIQQR I+P
Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIP 74
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 123 bits (296), Expect = 2e-28
Identities = 57/83 (68%), Positives = 70/83 (84%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
DVI QAQSGTGKTATF +LQQ+D ++ +CQAL+LAPTRELAQQI+KV+ ALGD+ K
Sbjct: 78 DVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVK 137
Query: 440 CHACIGGTNVREDIRQLESGVHV 508
HAC+GGT+VRED R L++GVHV
Sbjct: 138 VHACVGGTSVREDQRILQAGVHV 160
Score = 106 bits (254), Expect = 2e-23
Identities = 48/77 (62%), Positives = 63/77 (81%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV+DM+ R++L + IK+FVLDEADEMLSRGFKDQI+D+F++L +QV + SAT
Sbjct: 162 VGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSAT 221
Query: 691 MPDDVLEVSRCFMRDPV 741
MP + LE++R FM PV
Sbjct: 222 MPPEALEITRKFMSKPV 238
Score = 66.9 bits (156), Expect = 1e-11
Identities = 30/41 (73%), Positives = 35/41 (85%)
Frame = +3
Query: 123 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 245
T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVP 72
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 116 bits (279), Expect = 2e-26
Identities = 55/84 (65%), Positives = 67/84 (79%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
RDVIAQAQSGTGKT+ ++S+ Q +DTS RE QALIL+PTRELA Q +K + A+G H N
Sbjct: 73 RDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANI 132
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
+ HACIGG +V EDIR+LE GVHV
Sbjct: 133 QAHACIGGNSVGEDIRKLEHGVHV 156
Score = 103 bits (247), Expect = 1e-22
Identities = 47/76 (61%), Positives = 61/76 (80%)
Frame = +1
Query: 514 GTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATM 693
GTPGRV DMI RR+L IKL +LDE+DEMLSRGFKDQI+DV++ L D+QV L+SAT+
Sbjct: 159 GTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATL 218
Query: 694 PDDVLEVSRCFMRDPV 741
P ++LE++ FM +PV
Sbjct: 219 PHEILEMTSKFMTEPV 234
Score = 66.1 bits (154), Expect = 2e-11
Identities = 27/44 (61%), Positives = 37/44 (84%)
Frame = +3
Query: 123 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 254
TD + + +F+DM +KE++LRG+Y YGFEKPSAIQQRA+MP +Q
Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQ 71
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 104 bits (250), Expect = 6e-23
Identities = 47/83 (56%), Positives = 64/83 (77%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
RDVIAQAQSGTGKT+ +IS+ Q ++ S R+ Q L+L+P+RELA Q +K + A+G H N
Sbjct: 60 RDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNI 119
Query: 437 KCHACIGGTNVREDIRQLESGVH 505
+ HACIGG ++ EDI++LE GVH
Sbjct: 120 QAHACIGGKSIGEDIKKLERGVH 142
Score = 103 bits (248), Expect = 1e-22
Identities = 46/76 (60%), Positives = 60/76 (78%)
Frame = +1
Query: 514 GTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATM 693
GTPGRVYDMI R +L +KL VLDE+DEMLS+G KDQI+DV++ L D+QV L+SAT+
Sbjct: 146 GTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATL 205
Query: 694 PDDVLEVSRCFMRDPV 741
P ++LE++ FM DPV
Sbjct: 206 PQEILEMTEKFMTDPV 221
Score = 54.0 bits (124), Expect = 1e-07
Identities = 19/38 (50%), Positives = 33/38 (86%)
Frame = +3
Query: 141 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 254
+++FDDM + +++LRG+Y YG++KPS IQQRA++P ++
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILK 58
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 80.2 bits (189), Expect = 1e-15
Identities = 38/84 (45%), Positives = 56/84 (66%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
RD++A+A++GTGKTA F I +L++ID QA+I+ PTRELA Q +V LG HL
Sbjct: 169 RDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKI 228
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
+ GGT++++DI +L VH+
Sbjct: 229 QVMVTTGGTSLKDDIMRLYQPVHL 252
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/76 (31%), Positives = 41/76 (53%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D+ + + V+DEAD++LS+ F+ + + L Q+++ SAT
Sbjct: 254 VGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSAT 313
Query: 691 MPDDVLEVSRCFMRDP 738
P V + F+ +P
Sbjct: 314 FPVTVKDFKDRFLTNP 329
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
F+D LK ELL GIY GFE+PS IQ+ +I
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESI 162
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 80.2 bits (189), Expect = 1e-15
Identities = 38/84 (45%), Positives = 56/84 (66%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
RD++A+A++GTGKTA F I +L++ID QA+I+ PTRELA Q +V LG HL
Sbjct: 169 RDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKI 228
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
+ GGT++++DI +L VH+
Sbjct: 229 QVMVTTGGTSLKDDIMRLYQPVHL 252
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/76 (31%), Positives = 41/76 (53%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D+ + + V+DEAD++LS+ F+ + + L Q+++ SAT
Sbjct: 254 VGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSAT 313
Query: 691 MPDDVLEVSRCFMRDP 738
P V + F+ +P
Sbjct: 314 FPVTVKDFKDRFLTNP 329
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
F+D LK ELL GIY GFE+PS IQ+ +I
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESI 162
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 77.8 bits (183), Expect = 7e-15
Identities = 37/83 (44%), Positives = 55/83 (66%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
D++A+A++GTGKT F I +L++ID + QA+IL PTRELA Q +V L +LN +
Sbjct: 163 DILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQ 222
Query: 440 CHACIGGTNVREDIRQLESGVHV 508
GGT++R+DI +L VH+
Sbjct: 223 VMVTTGGTSLRDDIMRLHQPVHL 245
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/76 (31%), Positives = 40/76 (52%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D+ + + V+DEAD++LS F+ + ++ + L + Q ++ SAT
Sbjct: 247 VGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSAT 306
Query: 691 MPDDVLEVSRCFMRDP 738
P V +R P
Sbjct: 307 FPVTVKAFKDRHLRKP 322
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
F+D LK +LL+GIY GFEKPS IQ+ +I
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESI 155
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 77.8 bits (183), Expect = 7e-15
Identities = 37/83 (44%), Positives = 55/83 (66%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
D++A+A++GTGKT F I +L++ID + QA+IL PTRELA Q +V L +LN +
Sbjct: 163 DILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQ 222
Query: 440 CHACIGGTNVREDIRQLESGVHV 508
GGT++R+DI +L VH+
Sbjct: 223 VMVTTGGTSLRDDIMRLHQPVHL 245
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/76 (31%), Positives = 40/76 (52%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D+ + + V+DEAD++LS F+ + ++ + L + Q ++ SAT
Sbjct: 247 VGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSAT 306
Query: 691 MPDDVLEVSRCFMRDP 738
P V +R P
Sbjct: 307 FPVTVKAFKDRHLRKP 322
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
F+D LK +LL+GIY GFEKPS IQ+ +I
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESI 155
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 72.1 bits (169), Expect = 4e-13
Identities = 36/83 (43%), Positives = 52/83 (62%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
D++A+A++GTGKT F I L++ID QA+IL PTRELA Q +V L +L +
Sbjct: 193 DILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIE 252
Query: 440 CHACIGGTNVREDIRQLESGVHV 508
GGT++R+DI +L VH+
Sbjct: 253 VMVTTGGTSLRDDIMRLYQPVHL 275
Score = 51.6 bits (118), Expect = 6e-07
Identities = 24/76 (31%), Positives = 41/76 (53%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D+ + + V+DEAD++LS F+ I ++ + L Q+++ SAT
Sbjct: 277 VGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSAT 336
Query: 691 MPDDVLEVSRCFMRDP 738
P V +++ P
Sbjct: 337 FPVTVKSFKDRYLKKP 352
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
F+D LK +LLRGIY GFEKPS IQ+ +I
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESI 185
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 67.3 bits (157), Expect = 1e-11
Identities = 31/77 (40%), Positives = 51/77 (66%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D+I R+L ++ VLDEAD+ML+ GF++ + + + L Q +L SAT
Sbjct: 233 VGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSAT 292
Query: 691 MPDDVLEVSRCFMRDPV 741
MP V +++R ++ +P+
Sbjct: 293 MPTWVKKLARKYLDNPL 309
Score = 50.8 bits (116), Expect = 1e-06
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 10/94 (10%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQID------TSIREC----QALILAPTRELAQQIQKV 406
RD+IA+A++GTGKT F I I++++ T+ R + L+LAPTRELA+Q++K
Sbjct: 140 RDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKE 199
Query: 407 VIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
+ +L+ C GG + L GV V
Sbjct: 200 IKESAPYLSTVC--VYGGVSYTIQQSALTRGVDV 231
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/68 (47%), Positives = 47/68 (69%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+GTPGRV D++++ + + I FVLDE D ML RGF+DQ+ +F+ LS QV+L SAT
Sbjct: 241 IGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALS-QPQVLLFSAT 299
Query: 691 MPDDVLEV 714
+ +V +V
Sbjct: 300 ISREVEKV 307
Score = 47.2 bits (107), Expect = 1e-05
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQIQKVVI 412
+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL Q++
Sbjct: 148 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAK 207
Query: 413 ALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
LG L K +GG + + +++ GV +
Sbjct: 208 MLGKGLPFKTALVVGGDPMSGQLYRIQQGVEL 239
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/68 (47%), Positives = 47/68 (69%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+GTPGRV D++++ + + I FVLDE D ML RGF+DQ+ +F+ LS QV+L SAT
Sbjct: 104 IGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALS-QPQVLLFSAT 162
Query: 691 MPDDVLEV 714
+ +V +V
Sbjct: 163 ISREVEKV 170
Score = 47.2 bits (107), Expect = 1e-05
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQIQKVVI 412
+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL Q++
Sbjct: 11 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAK 70
Query: 413 ALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
LG L K +GG + + +++ GV +
Sbjct: 71 MLGKGLPFKTALVVGGDPMSGQLYRIQQGVEL 102
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 67.3 bits (157), Expect = 1e-11
Identities = 34/87 (39%), Positives = 47/87 (54%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 678
C V TPGR+ DM+ +AL VLDEAD M GF+ Q+ + + D Q +L
Sbjct: 352 CEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLL 411
Query: 679 LSATMPDDVLEVSRCFMRDPVPHTCTE 759
SATMP V +++R + DP+ T E
Sbjct: 412 FSATMPWKVEKLAREILSDPIRVTVGE 438
Score = 43.6 bits (98), Expect = 1e-04
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKVVIALG 421
RDVI A++G+GKTA F + ++ I ++ + +I APTRELA QI
Sbjct: 266 RDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFS 325
Query: 422 DHLNAKCHACIGGTNVREDIRQLESGVHV 508
+ A GG + E ++L++G +
Sbjct: 326 KAYGLRVSAVYGGMSKHEQFKELKAGCEI 354
Score = 31.1 bits (67), Expect = 0.84
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 126 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
D + V+TF+D +++ I +EKP+AIQ +A+
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQAL 259
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 66.9 bits (156), Expect = 1e-11
Identities = 29/77 (37%), Positives = 51/77 (66%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D++ R AL+ + ++ VLDEAD+ML GF + + + + L A Q ++ SAT
Sbjct: 243 VGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSAT 302
Query: 691 MPDDVLEVSRCFMRDPV 741
MP + +++ ++ +P+
Sbjct: 303 MPSWIRSLTKKYLNNPL 319
Score = 56.4 bits (130), Expect = 2e-08
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVVIAL 418
RD+I +A++GTGKT F I I+ +I + Q L+LAPTRELA+Q++K
Sbjct: 154 RDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRES 213
Query: 419 GDHLNAKCHACIGGTNVREDIRQLESGVHV 508
L+ C GGT + + +R+L G+ V
Sbjct: 214 APSLDTIC--LYGGTPIGQQMRELNYGIDV 241
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 65.7 bits (153), Expect = 3e-11
Identities = 31/76 (40%), Positives = 45/76 (59%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+ TPGR+ DM+ + + + VLDEAD ML GF+ QI + + D Q +L SAT
Sbjct: 293 IATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSAT 352
Query: 691 MPDDVLEVSRCFMRDP 738
P +V ++R F+RDP
Sbjct: 353 WPREVETLARQFLRDP 368
Score = 47.6 bits (108), Expect = 9e-06
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALG 421
RD+I A++G+GKT + + L + R Q LILAPTRELA QIQ+ G
Sbjct: 203 RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFG 262
Query: 422 DHLNAKCHACIGGTNVREDIRQLESGVHV 508
+ GG IR L GV +
Sbjct: 263 LRSGVRSTCIYGGAPKGPQIRDLRRGVEI 291
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 65.7 bits (153), Expect = 3e-11
Identities = 31/76 (40%), Positives = 45/76 (59%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+ TPGR+ DM+ + + + VLDEAD ML GF+ QI + + D Q +L SAT
Sbjct: 293 IATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSAT 352
Query: 691 MPDDVLEVSRCFMRDP 738
P +V ++R F+RDP
Sbjct: 353 WPREVETLARQFLRDP 368
Score = 47.6 bits (108), Expect = 9e-06
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALG 421
RD+I A++G+GKT + + L + R Q LILAPTRELA QIQ+ G
Sbjct: 203 RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFG 262
Query: 422 DHLNAKCHACIGGTNVREDIRQLESGVHV 508
+ GG IR L GV +
Sbjct: 263 LRSGVRSTCIYGGAPKGPQIRDLRRGVEI 291
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 65.3 bits (152), Expect = 4e-11
Identities = 29/77 (37%), Positives = 50/77 (64%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV D++ R AL+ + ++ VLDEAD+ML GF + + + + L Q ++ SAT
Sbjct: 231 VGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSAT 290
Query: 691 MPDDVLEVSRCFMRDPV 741
MP + +++ ++ +P+
Sbjct: 291 MPSWIRSLTKKYLNNPL 307
Score = 57.2 bits (132), Expect = 1e-08
Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVVIAL 418
RD+I +A++GTGKT F I I+ +I R L+LAPTRELA+Q++K
Sbjct: 142 RDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRES 201
Query: 419 GDHLNAKCHACIGGTNVREDIRQLESGVHV 508
L+ C GGT + + +RQL+ GV V
Sbjct: 202 APSLDTIC--LYGGTPIGQQMRQLDYGVDV 229
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 64.5 bits (150), Expect = 7e-11
Identities = 33/84 (39%), Positives = 49/84 (58%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
RDV+ AQ+G+GKTA F++ IL ++ AL++ PTRELA Q+ + ALG LN
Sbjct: 96 RDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNL 155
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
+C +GG ++ L S H+
Sbjct: 156 RCSVIVGGMDMLTQTMSLVSRPHI 179
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Frame = +1
Query: 511 VGTPGRVYDMITRRA----LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 678
+ TPGR+ ++ + + T K VLDEAD +L GF+D++ +F+ L Q +L
Sbjct: 181 ITTPGRIKVLLENNPDVPPVFSRT-KFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLL 239
Query: 679 LSATMPDDV 705
SATM ++
Sbjct: 240 FSATMTSNL 248
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 63.3 bits (147), Expect = 2e-10
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILLSA 687
VGTPGRV + + L ++ F+LDE D+ML S + + ++FKM D QV++ SA
Sbjct: 171 VGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 230
Query: 688 TMPDDVLEVSRCFMRDPV 741
T+ ++ V + FM+DP+
Sbjct: 231 TLSKEIRPVCKKFMQDPM 248
Score = 60.1 bits (139), Expect = 2e-09
Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 436
DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +L +
Sbjct: 85 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 144
Query: 437 KCHACIGGTNVR 472
K GG N++
Sbjct: 145 KVSVFYGGVNIK 156
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQDAMLSL 272
F D LK ELLR I GFE PS +Q CI A+L +
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHE----CIPQAILGM 84
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 63.3 bits (147), Expect = 2e-10
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILLSA 687
VGTPGRV + + L ++ F+LDE D+ML S + + ++FKM D QV++ SA
Sbjct: 88 VGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 147
Query: 688 TMPDDVLEVSRCFMRDPV 741
T+ ++ V + FM+DP+
Sbjct: 148 TLSKEIRPVCKKFMQDPM 165
Score = 60.1 bits (139), Expect = 2e-09
Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 436
DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +L +
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 61
Query: 437 KCHACIGGTNVR 472
K GG N++
Sbjct: 62 KVSVFYGGVNIK 73
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 63.3 bits (147), Expect = 2e-10
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILLSA 687
VGTPGRV + + L ++ F+LDE D+ML S + + ++FKM D QV++ SA
Sbjct: 171 VGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 230
Query: 688 TMPDDVLEVSRCFMRDPV 741
T+ ++ V + FM+DP+
Sbjct: 231 TLSKEIRPVCKKFMQDPM 248
Score = 60.1 bits (139), Expect = 2e-09
Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 436
DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +L +
Sbjct: 85 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 144
Query: 437 KCHACIGGTNVR 472
K GG N++
Sbjct: 145 KVSVFYGGVNIK 156
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQDAMLSL 272
F D LK ELLR I GFE PS +Q CI A+L +
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHE----CIPQAILGM 84
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 61.3 bits (142), Expect = 7e-10
Identities = 28/77 (36%), Positives = 44/77 (57%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ DM+ ++ + + + LDEAD ++ GF+D I +VF + Q +L SAT
Sbjct: 283 VATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSAT 342
Query: 691 MPDDVLEVSRCFMRDPV 741
MP + +R + PV
Sbjct: 343 MPTKIQIFARSALVKPV 359
Score = 38.3 bits (85), Expect = 0.006
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 14/98 (14%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATF-----SISILQQIDTSIRECQA---LILAPTRELAQQIQKVV- 409
RD+I A +G+GKT F I++ +++ I + LI+ P+RELA+Q +VV
Sbjct: 184 RDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVE 243
Query: 410 -----IALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
+ + + CIGG ++R + ++ GVH+
Sbjct: 244 QFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHI 281
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 60.9 bits (141), Expect = 9e-10
Identities = 30/78 (38%), Positives = 47/78 (60%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+GTPGR+ D+I L + + VLDEAD ML GF++ + + + Q+++ SAT
Sbjct: 246 IGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSAT 305
Query: 691 MPDDVLEVSRCFMRDPVP 744
P DV ++++ FM DP P
Sbjct: 306 WPLDVHKLAQEFM-DPNP 322
Score = 44.4 bits (100), Expect = 8e-05
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIREC---------QALILAPTRELAQQIQKVV 409
RD+I A++G+GKT F I + + ++ L+L+PTRELA QI V+
Sbjct: 152 RDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVL 211
Query: 410 IALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
G+ K GG++ I + SGV +
Sbjct: 212 REAGEPCGLKSICVYGGSSKGPQISAIRSGVDI 244
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Frame = +1
Query: 493 EWCSCXVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQ 669
E C+ +GTPGR+ D++ R L +++ +LDEAD +L GF+ Q++ + L +
Sbjct: 141 EGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRR 200
Query: 670 VILLSATMPDDVLEVSRCFMRDPV 741
L SAT + V E+++ +R+PV
Sbjct: 201 TGLFSATQTEGVEELAKAGLRNPV 224
Score = 41.5 bits (93), Expect = 6e-04
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Frame = +2
Query: 215 FCNP--ATRNNALHPRRDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILA 370
FC P A L +DV A +G+GKT F + +++ + S + +I++
Sbjct: 38 FCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIIS 97
Query: 371 PTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLE 493
PTREL+ QI V L N +GG V+ D++ +E
Sbjct: 98 PTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIE 139
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 59.7 bits (138), Expect = 2e-09
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Frame = +1
Query: 445 CLHWWHQCP*RYSPTGEWCSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFK 624
CL+ P + VGTPGR+ D I R+ L + ++ VLDEADEML GF
Sbjct: 207 CLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFV 266
Query: 625 DQIHDVFKML--SADVQVILLSATMPDDVLEVSRCFMR 732
+ + + + S VQ +L SAT+P V +S F++
Sbjct: 267 EDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLK 304
Score = 37.9 bits (84), Expect = 0.007
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSI----------RECQALILAPTRELAQQIQKVV 409
D++ +A++G GKT F + IL+ + R L+L PTRELA+Q+
Sbjct: 135 DLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADF 194
Query: 410 IALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
A G L GG + +L+ GV +
Sbjct: 195 DAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDI 227
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 59.3 bits (137), Expect = 3e-09
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQKVVIALGDHLN 433
DV+A A++G+GKTA F I +L+++ + + +ALIL+PTR+LA+Q K LG +
Sbjct: 67 DVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTD 126
Query: 434 AKCHACIGGTNVREDIRQLESGVHV 508
+ +GG ++ + +L G V
Sbjct: 127 LRVSLLVGGDSMEDQFEELTKGPDV 151
Score = 57.6 bits (133), Expect = 8e-09
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +1
Query: 511 VGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 687
+ TPGR+ +++ + T++ V DEAD + GF +Q+H + LS + Q +L SA
Sbjct: 153 IATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLLFSA 212
Query: 688 TMPDDVLEVSRCFMRDP 738
T+P + E ++ +R+P
Sbjct: 213 TLPSALAEFAKAGLREP 229
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 58.8 bits (136), Expect = 4e-09
Identities = 28/76 (36%), Positives = 42/76 (55%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+ TPGR+ DM+ + + VLDEAD ML GF QI + + D Q + SAT
Sbjct: 227 IATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSAT 286
Query: 691 MPDDVLEVSRCFMRDP 738
P +V ++S+ F+ +P
Sbjct: 287 WPKEVEQLSKKFLYNP 302
Score = 48.0 bits (109), Expect = 7e-06
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVIALG 421
RD+I A++G+GKT ++ + + ++ L+LAPTRELA QIQ+ G
Sbjct: 137 RDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFG 196
Query: 422 DHLNAKCHACIGGTNVREDIRQLESGVHV 508
K GG +R L+ GV +
Sbjct: 197 SSSKIKTTCIYGGVPKGPQVRDLQKGVEI 225
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 58.4 bits (135), Expect = 5e-09
Identities = 26/57 (45%), Positives = 40/57 (70%)
Frame = +2
Query: 251 PRRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 421
P + +IAQA +G+GKT F + +L ++D ++RE QAL + PTRELA Q +V+ +G
Sbjct: 130 PHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMG 186
Score = 46.0 bits (104), Expect = 3e-05
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR-GFKDQIHDVFK---MLSADVQVIL 678
+GTPG + + + L N +K+ V DEAD ML+ GF+D + K ++ + QV+L
Sbjct: 219 IGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLL 278
Query: 679 LSATMPDDVLEVSRCFMRDP 738
SAT + V + ++DP
Sbjct: 279 FSATFNETVKDFVARTVKDP 298
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYA-YGFEKPSAIQ 227
F+D+NL EL++G+Y FEKPS IQ
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQ 119
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 57.6 bits (133), Expect = 8e-09
Identities = 25/62 (40%), Positives = 38/62 (61%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D++ ++ + + +L LDEAD ++ GF+D I VF + Q +L SAT
Sbjct: 234 VATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSAT 293
Query: 691 MP 696
MP
Sbjct: 294 MP 295
Score = 40.3 bits (90), Expect = 0.001
Identities = 29/98 (29%), Positives = 55/98 (56%), Gaps = 14/98 (14%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQ---ALILAPTRELAQQ----IQ 400
RD+I A +G+GKT F + ++ ++I I + AL++ P+RELA+Q ++
Sbjct: 135 RDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVE 194
Query: 401 KVVIALGD--HLNAKCHACIGGTNVREDIRQLESGVHV 508
+ V +L + + + CIGG ++R + ++ GVH+
Sbjct: 195 QFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHI 232
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIALGDH 427
RD+ A A +G+GKTA F++ L+++ + + LIL PTRELA QI ++ L
Sbjct: 205 RDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQF 264
Query: 428 LNAKCHACIGGTNVRE 475
+ KC +GG +VRE
Sbjct: 265 TDIKCGLIVGGLSVRE 280
Score = 49.2 bits (112), Expect = 3e-06
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +1
Query: 511 VGTPGRVYDMITRR-ALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 687
V TPGR+ D + ++ + + + +LDEAD +L GF +I ++ ++ Q +L SA
Sbjct: 293 VATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSA 352
Query: 688 TMPDDVLEVSRCFMRDPV 741
TM ++V E+ + + P+
Sbjct: 353 TMTEEVKELVKLSLNKPL 370
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 144 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
+TF ++NL LLR G++KP+ IQ I
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACI 198
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/77 (33%), Positives = 44/77 (57%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D++ + + + L VLDEAD ML GF+ QI + + Q ++ +AT
Sbjct: 562 VATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTAT 621
Query: 691 MPDDVLEVSRCFMRDPV 741
P +V +++ + +PV
Sbjct: 622 WPKEVRKIASDLLVNPV 638
Score = 50.0 bits (114), Expect = 2e-06
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIALGD 424
RD++A A++G+GKT + I +L+ R LILAPTRELA QIQ + G
Sbjct: 473 RDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGR 532
Query: 425 HLNAKCHACIGGTNVREDIRQLESGVHV 508
C GG +++LE G +
Sbjct: 533 SSRISCTCLYGGAPKGPQLKELERGADI 560
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/76 (35%), Positives = 42/76 (55%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D++ R + I VLDEAD ML GF+ QI + K + Q ++ +AT
Sbjct: 285 VATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTAT 344
Query: 691 MPDDVLEVSRCFMRDP 738
P V +++ + +P
Sbjct: 345 WPKGVRKIAADLLVNP 360
Score = 51.2 bits (117), Expect = 7e-07
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIALGD 424
RD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ+ + G
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGR 255
Query: 425 HLNAKCHACIGGTNVREDIRQLESGVHV 508
C GG +R LE G +
Sbjct: 256 SSRISCTCLYGGAPKGPQLRDLERGADI 283
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/76 (35%), Positives = 42/76 (55%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D++ R + I VLDEAD ML GF+ QI + K + Q ++ +AT
Sbjct: 285 VATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTAT 344
Query: 691 MPDDVLEVSRCFMRDP 738
P V +++ + +P
Sbjct: 345 WPKGVRKIAADLLVNP 360
Score = 51.2 bits (117), Expect = 7e-07
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIALGD 424
RD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ+ + G
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGR 255
Query: 425 HLNAKCHACIGGTNVREDIRQLESGVHV 508
C GG +R LE G +
Sbjct: 256 SSRISCTCLYGGAPKGPQLRDLERGADI 283
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/76 (35%), Positives = 42/76 (55%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D++ R + I VLDEAD ML GF+ QI + K + Q ++ +AT
Sbjct: 285 VATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTAT 344
Query: 691 MPDDVLEVSRCFMRDP 738
P V +++ + +P
Sbjct: 345 WPKGVRKIAADLLVNP 360
Score = 51.2 bits (117), Expect = 7e-07
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIALGD 424
RD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ+ + G
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGR 255
Query: 425 HLNAKCHACIGGTNVREDIRQLESGVHV 508
C GG +R LE G +
Sbjct: 256 SSRISCTCLYGGAPKGPQLRDLERGADI 283
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 55.6 bits (128), Expect = 3e-08
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = +1
Query: 493 EWCSCXVGTPGRVYDMITRRA---LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSAD 663
E C + TPGR+ D I ++ +KLF++DEAD +L GFK + + L
Sbjct: 503 EPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQ 562
Query: 664 VQVILLSATMPDDVLEVSRCFMR 732
Q +L SAT+P +V VS+ ++
Sbjct: 563 RQSLLFSATIPKEVRRVSQLVLK 585
Score = 41.5 bits (93), Expect = 6e-04
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQA---------LILAPTRELAQQIQKVV 409
+D + +A++GTGK+ F + ++ + ++ + LIL PTRELA QI
Sbjct: 413 KDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEG 472
Query: 410 IA-LGDHLNAKCHACIGGTNVREDIRQLES 496
A L +H IGGT R D ++LES
Sbjct: 473 KALLKNHDGIGVQTLIGGTRFRLDQQRLES 502
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 54.8 bits (126), Expect = 6e-08
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV---- 666
C V TPGR+ D++ R + I+ LDEAD ML GF+ QI + + +
Sbjct: 280 CDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVR 339
Query: 667 QVILLSATMPDDVLEVSRCFM 729
Q +L SAT P + ++ FM
Sbjct: 340 QTMLFSATFPSQIQRLAADFM 360
Score = 49.6 bits (113), Expect = 2e-06
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKV 406
RD++A AQ+G+GKTA F I+ I D + + A+IL+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 407 VIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
K GGT + + +R+LE G +
Sbjct: 249 AKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDI 282
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 54.8 bits (126), Expect = 6e-08
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV---- 666
C V TPGR+ D++ R + I+ LDEAD ML GF+ QI + + +
Sbjct: 280 CDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVR 339
Query: 667 QVILLSATMPDDVLEVSRCFM 729
Q +L SAT P + ++ FM
Sbjct: 340 QTMLFSATFPSQIQRLAADFM 360
Score = 49.6 bits (113), Expect = 2e-06
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKV 406
RD++A AQ+G+GKTA F I+ I D + + A+IL+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 407 VIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
K GGT + + +R+LE G +
Sbjct: 249 AKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDI 282
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 54.8 bits (126), Expect = 6e-08
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = +1
Query: 493 EWCSCXVGTPGRVYDMITRRA-LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQ 669
E + +GTPGR+ DM+ R L +++ +LDEAD +L GF+ Q++ + L +
Sbjct: 134 EGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRR 193
Query: 670 VILLSATMPDDVLEVSRCFMRDP 738
L SAT V ++++ +R+P
Sbjct: 194 TGLFSATQTQAVADLAKAGLRNP 216
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIAL 418
+DV+ A +G+GKT F + ++ I S + +I++PTREL+ QI KV A+
Sbjct: 55 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAV 114
Query: 419 GDHLNAKCHACIGGTNVRED 478
AKC N E+
Sbjct: 115 RLDF-AKCREVEADMNTLEE 133
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 54.4 bits (125), Expect = 8e-08
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = +1
Query: 493 EWCSCXVGTPGRVYDMITRRA---LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSAD 663
E C + TPGR+ D I ++ +KLF++DEAD +L GF+ + + L
Sbjct: 456 EPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQ 515
Query: 664 VQVILLSATMPDDVLEVSRCFMR 732
Q +L SAT+P +V VS+ ++
Sbjct: 516 RQSLLFSATIPKEVRRVSQLVLK 538
Score = 40.7 bits (91), Expect = 0.001
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 12/92 (13%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQ---------ALILAPTRELAQQIQ--- 400
+D + +A++GTGK+ F + ++ + ++ + ALIL PTRELA QI
Sbjct: 366 KDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEG 425
Query: 401 KVVIALGDHLNAKCHACIGGTNVREDIRQLES 496
K ++ D + + IGGT + D ++LES
Sbjct: 426 KALLKFHDGIGVQ--TLIGGTRFKLDQQRLES 455
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRR---ALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQ 669
C V TPGR+ D I A +K+ VLDEAD +L GF+ I + + + Q
Sbjct: 183 CQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQ 242
Query: 670 VILLSATMPDDVLEVSRCFMR 732
L SAT+P++V ++ +R
Sbjct: 243 TFLFSATVPEEVRQICLVALR 263
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ-IQKVV 409
+DV+A+A++GTGKT F + ++ + D AL++ PTRELA Q +
Sbjct: 92 KDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEAN 151
Query: 410 IALGDHLNAKCHACIGGTNVREDIRQLES 496
L H + IGGT + + +++++
Sbjct: 152 TLLKYHPSIGVQVVIGGTRLGLEQKRMQT 180
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +1
Query: 511 VGTPGRVYD-MITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 687
V TPGR++D M + ++K VLDEAD +L+ F+ ++ + + + + + L SA
Sbjct: 144 VATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLFSA 203
Query: 688 TMPDDVLEVSRCFMRDPV 741
TM V ++ R +R+PV
Sbjct: 204 TMTKKVRKLQRACLRNPV 221
Score = 50.4 bits (115), Expect = 1e-06
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 12/96 (12%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------------ALILAPTRELAQQIQ 400
+DVI AQ+G+GKT F+I ILQ + + + + A +L+PTRELA QI
Sbjct: 47 KDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIA 106
Query: 401 KVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
+ ALG ++ +C +GG + + L HV
Sbjct: 107 EQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHV 142
Score = 33.1 bits (72), Expect = 0.21
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +3
Query: 132 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
++VV+TF ++ ++EEL++ G++ PS IQ A+
Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEAL 40
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/76 (31%), Positives = 43/76 (56%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D++ + + + + VLDEAD ML GF+ QI + + Q ++ +AT
Sbjct: 356 VATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTAT 415
Query: 691 MPDDVLEVSRCFMRDP 738
P +V +++ + +P
Sbjct: 416 WPKEVRKIAADLLVNP 431
Score = 50.8 bits (116), Expect = 1e-06
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIALGD 424
RD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ + G
Sbjct: 267 RDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGK 326
Query: 425 HLNAKCHACIGGTNVREDIRQLESGVHV 508
C GG ++++E GV +
Sbjct: 327 SSKISCACLYGGAPKGPQLKEIERGVDI 354
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 8/93 (8%)
Frame = +2
Query: 254 RRDVIAQAQSGTGKTATFSISILQQID-----TSIRECQ---ALILAPTRELAQQIQKVV 409
+RDVI A++G+GKTA F + +L I + E + A+++APTRELAQQI++
Sbjct: 350 QRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEET 409
Query: 410 IALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
+ +L + + +GG ++ E ++ G +
Sbjct: 410 VKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEI 442
Score = 47.6 bits (108), Expect = 9e-06
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 17/98 (17%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVF-KMLSADVQ-- 669
C + TPGR+ D + RR N VLDEAD M+ GF+ Q+ V M S++++
Sbjct: 440 CEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPE 499
Query: 670 --------------VILLSATMPDDVLEVSRCFMRDPV 741
+ SATMP V ++R ++R+PV
Sbjct: 500 NEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPV 537
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 141 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
+ ++++ L ELL+ + G++KPS IQ AI
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAI 344
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 53.2 bits (122), Expect = 2e-07
Identities = 37/94 (39%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKV 406
RD++A AQ+G+GKTA F I+ I D I + A+IL+PTRELA QI
Sbjct: 184 RDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDE 243
Query: 407 VIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
K GGT V + IR+LE GV +
Sbjct: 244 ARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDI 277
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV----QVIL 678
V TPGR+ D++ R + ++ LDEAD ML GF+ QI + + + Q +L
Sbjct: 279 VATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTML 338
Query: 679 LSATMPDDVLEVSRCFM 729
SAT P ++ ++ F+
Sbjct: 339 FSATFPREIQRLASDFL 355
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 53.2 bits (122), Expect = 2e-07
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 10/94 (10%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKV 406
RD++A AQ+G+GKTA F I+ I D ++ + A+IL+PTRELA QI
Sbjct: 197 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDE 256
Query: 407 VIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
K GGT + + +R+LE GV +
Sbjct: 257 AKKFSYQTGVKVVVAYGGTPINQQLRELERGVDI 290
Score = 51.2 bits (117), Expect = 7e-07
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV----QVIL 678
V TPGR+ D++ R + I+ LDEAD ML GF+ QI + + + Q +L
Sbjct: 292 VATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLL 351
Query: 679 LSATMPDDVLEVSRCFM 729
SAT P ++ ++ F+
Sbjct: 352 FSATFPREIQRLAADFL 368
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +1
Query: 496 WCSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS-ADVQV 672
WC + TP R+ I + + + ++ VLDE+D++ + QI V K S +
Sbjct: 258 WCDVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIR 317
Query: 673 ILLSATMPDDVLEVSRCFMRDPV 741
L SAT+PD V E++R M D V
Sbjct: 318 SLFSATLPDSVEELARSIMHDAV 340
Score = 31.5 bits (68), Expect = 0.64
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDT-SIRECQALILAPTRELAQQ 394
R+ A A +G+GKT F +L ++ S +A+IL+P RELA Q
Sbjct: 179 RECFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQ 225
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = +1
Query: 493 EWCSCXVGTPGRVYDMITRRA-LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQ 669
E + +GTPGR+ DM+ R L +++ +LDEAD +L GF+ Q++ + L +
Sbjct: 141 EGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRR 200
Query: 670 VILLSATMPDDVLEVSRCFMRD 735
L SAT V ++++ +R+
Sbjct: 201 TGLFSATQTQAVADLAKAGLRN 222
Score = 43.2 bits (97), Expect = 2e-04
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIAL 418
+DV+ A +G+GKT F + ++ I S + +I++PTREL+ QI KV
Sbjct: 54 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPF 113
Query: 419 GDHL-NAKCHACIGGTNVREDIRQLE 493
L N +GG V D+ LE
Sbjct: 114 VSTLPNVNSVLLVGGREVEADMNTLE 139
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 52.0 bits (119), Expect = 4e-07
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 14/91 (15%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS----------- 657
VGTPGR+ ++ LH + + VLDE DE+LS F++ IH + + +
Sbjct: 248 VGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPKGEV 307
Query: 658 ---ADVQVILLSATMPDDVLEVSRCFMRDPV 741
A+ Q IL+SAT+P V+ ++ + +PV
Sbjct: 308 DERANRQTILVSATVPFSVIRAAKSWSHEPV 338
Score = 34.7 bits (76), Expect = 0.068
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQI-------------DTSIRECQALILAPTRELAQQI- 397
D + Q+ +G+GKT + + IL +I + E QA+I+AP+REL QI
Sbjct: 149 DAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIV 208
Query: 398 QKVVIALGDHLNAKCHACIGGTN 466
++V LG +GG N
Sbjct: 209 REVEKLLGPVHRRMVQQLVGGAN 231
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 51.6 bits (118), Expect = 6e-07
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRRALHANT---IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQ 669
C V TPGR+ D I + A +K+ VLDEAD +L GF+ I + + Q
Sbjct: 511 CQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQ 570
Query: 670 VILLSATMPDDVLEV 714
L SAT+P++V ++
Sbjct: 571 TFLFSATVPEEVRQI 585
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ-IQKVV 409
+DV+A+A++GTGKT F + ++ + D+ L++ PTRELA Q +
Sbjct: 420 KDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEAN 479
Query: 410 IALGDHLNAKCHACIGGTNVREDIRQLES 496
L H + IGGT + + R++++
Sbjct: 480 TLLKYHPSIGVQVVIGGTKLPTEQRRMQT 508
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 51.6 bits (118), Expect = 6e-07
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +1
Query: 511 VGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 687
+ TPGR+ D + +A +K V+DEAD +L F++ ++ + K+L Q L SA
Sbjct: 216 IATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQTALFSA 275
Query: 688 TMPDDVLEVSRCFMRDPVPHTCTEGR 765
T V +++R + PV +GR
Sbjct: 276 TQTSKVKDLARVSLTSPVHVDVDDGR 301
Score = 44.8 bits (101), Expect = 6e-05
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGD 424
+DV+ A++G+GKT F ++ +L + S R +++ PTRELA Q + V L
Sbjct: 127 KDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLK 186
Query: 425 HLNAKCHACIGGTNVREDIRQLESG 499
H + IGG N R + +++ SG
Sbjct: 187 HHSQTVSMVIGGNNRRSEAQRIASG 211
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 50.8 bits (116), Expect = 1e-06
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRRALHANT---IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQ 669
C V TPGR+ D I + A +K+ VLDEAD +L GF+ +I + + Q
Sbjct: 209 CQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQ 268
Query: 670 VILLSATMPDDVLEV 714
L SAT+ D+V ++
Sbjct: 269 TFLFSATVSDEVRQI 283
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELA-QQIQKVV 409
+D++A+A++GTGKT F + ++ + D L++ PTRELA Q +
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEAN 177
Query: 410 IALGDHLNAKCHACIGGTNVREDIRQLE 493
I L H + IGGT + + R+L+
Sbjct: 178 ILLKYHPSIGVQVVIGGTKLPTEQRRLQ 205
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 50.8 bits (116), Expect = 1e-06
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVVIALG 421
RD I A++G+GKT F + +L+ I D E L++APTREL QQI +
Sbjct: 567 RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFS 626
Query: 422 DHLNAKCHACIGGTNVREDIRQLESGVHV 508
L +C GG+ V + I +L+ G +
Sbjct: 627 KPLGIRCVPVYGGSGVAQQISELKRGTEI 655
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Frame = +1
Query: 511 VGTPGRVYDMI---TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 681
V TPGR+ D++ + + + + V+DEAD M GF+ QI + + + + Q +L
Sbjct: 657 VCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLF 716
Query: 682 SATMPDDVLEVSRCFMRDPV 741
SAT P V ++R + PV
Sbjct: 717 SATFPRQVETLARKVLNKPV 736
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 50.0 bits (114), Expect = 2e-06
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Frame = +1
Query: 511 VGTPGRVYDMI---TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 681
V TPGR+ D++ + + + + V+DEAD M GF+ QI + + + D Q +L
Sbjct: 524 VCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLF 583
Query: 682 SATMPDDVLEVSRCFMRDPV 741
SAT P V ++R + PV
Sbjct: 584 SATFPRQVETLARKVLNKPV 603
Score = 48.4 bits (110), Expect = 5e-06
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVVIALG 421
RD I A++G+GKT F + +L+ I D E L++APTREL QQI +
Sbjct: 434 RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFS 493
Query: 422 DHLNAKCHACIGGTNVREDIRQLESGVHV 508
L C GG+ V + I +L+ G +
Sbjct: 494 KALGIICVPVYGGSGVAQQISELKRGTEI 522
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/66 (33%), Positives = 40/66 (60%)
Frame = +1
Query: 562 ANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPV 741
+ ++ + VLDEAD +LS G++D + V ++ Q +L+SAT DV ++ + + +P+
Sbjct: 198 SESLSILVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPI 257
Query: 742 PHTCTE 759
T TE
Sbjct: 258 VLTLTE 263
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 6/60 (10%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI---DTSIRE---CQALILAPTRELAQQIQKVVIAL 418
+DV+A+A++G+GKT + + +LQ++ D+ ++ A IL P+REL QQ+ V +L
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSL 143
Score = 32.7 bits (71), Expect = 0.28
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 132 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
++ ++F+++ L L+R + G EKP+ IQQ AI
Sbjct: 42 EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAI 77
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/79 (29%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQIQKVVIALGDHLN 433
RD+ + +G+GKT ++++ I+Q + +R +AL++ PTR+LA Q++ V A+ +
Sbjct: 63 RDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVG 122
Query: 434 AKCHACIGGTNVREDIRQL 490
+ +G +++ +I QL
Sbjct: 123 LSVGSAVGQSSIAGEISQL 141
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 48.4 bits (110), Expect = 5e-06
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +1
Query: 511 VGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 687
V TPGR+ D + +K V+DEAD +L + F++ + + +L Q L SA
Sbjct: 281 VATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSA 340
Query: 688 TMPDDVLEVSRCFMRDPVPHTCTEGR 765
T V +++R + PV EGR
Sbjct: 341 TQSAKVEDLARVSLTSPVYIDVDEGR 366
Score = 37.5 bits (83), Expect = 0.010
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDH 427
DV+ A++G+GKT F ++ +L ++ + R L++ PTRELA Q V L +
Sbjct: 193 DVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKY 252
Query: 428 LNAKCHACIGGTNVREDIRQLESGVHV 508
+ IGG + + L GV++
Sbjct: 253 HSQTVGKVIGGEKRKTEAEILAKGVNL 279
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 48.0 bits (109), Expect = 7e-06
Identities = 23/50 (46%), Positives = 31/50 (62%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKV 406
RD I AQ+G+GKT T+ + I I+ QA+I+ PTREL Q+ KV
Sbjct: 114 RDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKV 163
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 45.6 bits (103), Expect = 4e-05
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +1
Query: 511 VGTPGRVYDMITRRA-LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 687
V PGR+ + +++ +LDEAD +L FK Q+ + L Q +L SA
Sbjct: 198 VCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKHRQTLLFSA 257
Query: 688 TMPDDVLEVSRCFMRDP 738
T V +++R +RDP
Sbjct: 258 TQTKKVKDLARLSLRDP 274
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQ----ALILAPTRELAQQIQKVVIALGD 424
RD++ A++G+GKT F I IL+++ + +I++PTRELA Q V+ +G
Sbjct: 109 RDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGK 168
Query: 425 HLNAKCHACIGGTNVREDIRQLESGVH 505
IGG RE + + VH
Sbjct: 169 FHKFSAGLLIGG---REGVDVEKERVH 192
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 42.7 bits (96), Expect = 3e-04
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Frame = +2
Query: 242 ALHPRRDVIAQAQSGTGKTATFSISILQQI---------DTSIRECQALILAPTRELAQQ 394
A+ R+ V+ + +G+GKT + + I+Q + T R + ++L PTREL++Q
Sbjct: 145 AVMERKSVVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQ 204
Query: 395 IQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 502
+ +V ++ H + GG+ +R L + +
Sbjct: 205 VYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAI 240
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI 633
VGTPGR+ I + I VLDEAD M RGF +I
Sbjct: 244 VGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEI 284
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHA---NTIKLFVLDEADEMLSRGFKDQIHDVFKML 654
V TPGR++++++ H +++ FVLDEAD M+ RG ++ + +L
Sbjct: 334 VATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLL 384
Score = 37.1 bits (82), Expect = 0.013
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 20/106 (18%)
Frame = +2
Query: 236 NNALHPRRDVIAQAQSGTGKTATFSISILQQ-IDTSIR----------ECQ--------- 355
N A + +DVI A++G+GKT F + ILQ+ +D + E Q
Sbjct: 222 NVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLR 281
Query: 356 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 493
ALI+ PTRELA Q+ + + +L+ K +GG + R+L+
Sbjct: 282 ALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLK 327
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/73 (20%), Positives = 39/73 (53%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TP R+ +++T + + + + L V+DE + S G+ + + + + +S+ Q I+ + +
Sbjct: 251 VATPERLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVFNNS 310
Query: 691 MPDDVLEVSRCFM 729
++ + F+
Sbjct: 311 FSASIIPAVQSFL 323
>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 691
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/75 (22%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = +2
Query: 242 ALHPRRDVIAQAQSGTGKTATFSISILQQIDTSIREC-QALILAPTRELA-QQIQKVVIA 415
+L+ R +I+ + +++ L+++ +++EC +A+ + P+ A Q++ + +
Sbjct: 241 SLYDRAILISPGNAAYRSNRAAALTALRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLR 300
Query: 416 LGDHLNAKCHACIGG 460
LG+ NA+ H C G
Sbjct: 301 LGEAENARRHICFSG 315
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 32.3 bits (70), Expect = 0.36
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI--------DTSIREC-QALILAPTRELAQQIQKVV 409
+ I QSG+GKT + + ++Q++ S C + ++L PT ELA Q+
Sbjct: 412 KSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANC 471
Query: 410 IALG-DHLNAKCHACIGGTNVREDIRQLESGVHV 508
++ + + GG R + LE GV V
Sbjct: 472 RSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDV 505
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRG-FKDQIHDVFKMLSADVQVILLSA 687
+ TPGR ++ L + ++ +LDE D + F+ + ++ Q + ++A
Sbjct: 507 IATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLINSSPVTAQYLFVTA 566
Query: 688 TMPDDV 705
T+P ++
Sbjct: 567 TLPLEI 572
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 32.3 bits (70), Expect = 0.36
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQIQKVV 409
RDV+ A +GTGKT + ++ + + AL++ PTREL Q+ + +
Sbjct: 68 RDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETL 124
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/63 (34%), Positives = 33/63 (52%)
Frame = +1
Query: 571 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVPHT 750
I+ F +D E G KD D ++ D +V S + DDVL+ R F+R+ +P+T
Sbjct: 215 IRYFPIDGDVEAGGVG-KDDDGDAMEV-EGDGKVAQESKAVSDDVLDTGRLFVRN-LPYT 271
Query: 751 CTE 759
TE
Sbjct: 272 ATE 274
>At3g10020.1 68416.m01202 expressed protein
Length = 149
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 60 GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQR 233
GP + D PP MD G + D +QV ++ DD+ + EL++G E P+ + +
Sbjct: 83 GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAV--ELVKGEVEVAKEAPAGVARV 140
Query: 234 AIMP 245
+ P
Sbjct: 141 EVDP 144
>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 376
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 359 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 463
LILA T + + K ++ LG ++NA C GGT
Sbjct: 46 LILACTNDDLYDVAKTLLELGSNVNAYRSGCNGGT 80
>At1g15140.3 68414.m01810 oxidoreductase NAD-binding
domain-containing protein Contains Pfam profile PF00175:
Oxidoreductase NAD-binding domain; ESTs gb|H76345 and
gb|AA651465 come from this gene
Length = 271
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -2
Query: 662 SADNILKTSWIWSLKPLDNISSASSRTKSLMVLA*SARRVIISYTRPG 519
SA + + + +W+ PL I SA+ + + +A ++ SYTRPG
Sbjct: 47 SAAAVRQDASLWTPAPLSLIESAAESLFHISIDISNAPDLVASYTRPG 94
>At1g15140.2 68414.m01809 oxidoreductase NAD-binding
domain-containing protein Contains Pfam profile PF00175:
Oxidoreductase NAD-binding domain; ESTs gb|H76345 and
gb|AA651465 come from this gene
Length = 271
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -2
Query: 662 SADNILKTSWIWSLKPLDNISSASSRTKSLMVLA*SARRVIISYTRPG 519
SA + + + +W+ PL I SA+ + + +A ++ SYTRPG
Sbjct: 47 SAAAVRQDASLWTPAPLSLIESAAESLFHISIDISNAPDLVASYTRPG 94
>At1g15140.1 68414.m01808 oxidoreductase NAD-binding
domain-containing protein Contains Pfam profile PF00175:
Oxidoreductase NAD-binding domain; ESTs gb|H76345 and
gb|AA651465 come from this gene
Length = 295
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -2
Query: 662 SADNILKTSWIWSLKPLDNISSASSRTKSLMVLA*SARRVIISYTRPG 519
SA + + + +W+ PL I SA+ + + +A ++ SYTRPG
Sbjct: 47 SAAAVRQDASLWTPAPLSLIESAAESLFHISIDISNAPDLVASYTRPG 94
>At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 510
Score = 28.3 bits (60), Expect = 5.9
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = +1
Query: 523 GRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDV-----FKMLSADVQVILLSA 687
GRV D I+ R L + + DEA +L + Q+ D+ KM + V+L S+
Sbjct: 308 GRVVDFISYRTLVDESCRKGKYDEATRLLEMLREKQLVDIDSDDKLKMYQMVILVLLFSS 367
Query: 688 TMPDDVLEVSRCFMRDPVP 744
+P V + SR + VP
Sbjct: 368 MLP-SVCDESRYMIVRNVP 385
>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 682
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +2
Query: 326 QIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 460
+++ +++EC +A+ P+ A Q++ + + LG+ NA+ H C+ G
Sbjct: 260 RLEEAVKECLEAVRCDPSYARAHQRLASLYLRLGEAENARRHLCVSG 306
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +3
Query: 15 SSERRSEDWPEDSK---NGPSKDQGSYDGPPGMDPG 113
S R D P + +GPS+ +G YDGP G G
Sbjct: 282 SQGRGGYDGPSQGRGGYDGPSQGRGGYDGPQGRGRG 317
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,295,904
Number of Sequences: 28952
Number of extensions: 410340
Number of successful extensions: 1404
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -