Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0060
(738 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containi... 29 2.4
At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family... 29 4.3
At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family... 29 4.3
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 29 4.3
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 29 4.3
At5g22000.3 68418.m02560 zinc finger (C3HC4-type RING finger) fa... 28 7.4
At5g22000.2 68418.m02559 zinc finger (C3HC4-type RING finger) fa... 28 7.4
At5g22000.1 68418.m02558 zinc finger (C3HC4-type RING finger) fa... 28 7.4
At4g24320.1 68417.m03491 hypothetical protein 28 7.4
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 28 7.4
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 28 7.4
>At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 579
Score = 29.5 bits (63), Expect = 2.4
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Frame = -3
Query: 592 APRARRWYRIPTTSPSLKQRNRSLRKSPEV--GATISQFQAKRGHSNKACRLGPQ*WRSG 419
A R R I T L+ R+ R S + T++ K ++ A Q +SG
Sbjct: 6 AIRCARTQNIVTIGSLLQLRSSFPRLSSQFHFSGTLNSIPIKHLSTSAAANDYHQNPQSG 65
Query: 418 APSERRRNYPSPGSTGSRPGNSSHRNSPRK*TSLDKENGG 299
+PS+ +R YP P S S+ ++++ P+ ++GG
Sbjct: 66 SPSQHQRPYP-PQSFDSQNQTNTNQRVPQSPNQWSTQHGG 104
>At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family
protein
Length = 438
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = -2
Query: 662 WTSEGQCRPPCAGGLPRSYAFAPCSQSPQVVSHSDHEPQLETTQSITPQVS 510
W + Q RP +GG P +Y+ AP P V S Q+++ S PQ S
Sbjct: 239 WPPQPQARPQSSGGYP-TYSPAPPGNQPPVES-LPSSMQMQSPYSGPPQQS 287
>At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family
protein
Length = 496
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = -2
Query: 662 WTSEGQCRPPCAGGLPRSYAFAPCSQSPQVVSHSDHEPQLETTQSITPQVS 510
W + Q RP +GG P +Y+ AP P V S Q+++ S PQ S
Sbjct: 297 WPPQPQARPQSSGGYP-TYSPAPPGNQPPVES-LPSSMQMQSPYSGPPQQS 345
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -3
Query: 469 GHSNKACRLGPQ*WRSGAPSERRRNYPSPGSTGSRPGNSSHRNSPRK 329
GH + CR G R +PS RRR P G R+ PR+
Sbjct: 98 GHFARECRRGRGSVRRRSPSPRRRRSPDYGYARRSISPRGRRSPPRR 144
Score = 27.5 bits (58), Expect = 9.8
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = -3
Query: 547 SLKQRNRS--LRKSPEVGATISQFQAKRGHSNKACRLGPQ*WRSGAPSERRRNYP-SPGS 377
S+++R+ S R+SP+ G A+R S + R P+ RS P R R+Y SP
Sbjct: 110 SVRRRSPSPRRRRSPDYG------YARRSISPRGRRSPPR-RRSVTPPRRGRSYSRSPPY 162
Query: 376 TGSRPGNSSHRNSP 335
GSR + R+SP
Sbjct: 163 RGSRRDSPRRRDSP 176
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -3
Query: 469 GHSNKACRLGPQ*WRSGAPSERRRNYPSPGSTGSRPGNSSHRNSPRK 329
GH + CR G R +PS RRR P G R+ PR+
Sbjct: 98 GHFARECRRGRGSVRRRSPSPRRRRSPDYGYARRSISPRGRRSPPRR 144
Score = 27.5 bits (58), Expect = 9.8
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = -3
Query: 547 SLKQRNRS--LRKSPEVGATISQFQAKRGHSNKACRLGPQ*WRSGAPSERRRNYP-SPGS 377
S+++R+ S R+SP+ G A+R S + R P+ RS P R R+Y SP
Sbjct: 110 SVRRRSPSPRRRRSPDYG------YARRSISPRGRRSPPR-RRSVTPPRRGRSYSRSPPY 162
Query: 376 TGSRPGNSSHRNSP 335
GSR + R+SP
Sbjct: 163 RGSRRDSPRRRDSP 176
>At5g22000.3 68418.m02560 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 375
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 570 YHLRALGAWCERVGSWQAPSAWRS 641
YHL+ + WC+R S Q P W+S
Sbjct: 55 YHLQCILEWCQR--SSQCPMCWQS 76
>At5g22000.2 68418.m02559 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 375
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 570 YHLRALGAWCERVGSWQAPSAWRS 641
YHL+ + WC+R S Q P W+S
Sbjct: 55 YHLQCILEWCQR--SSQCPMCWQS 76
>At5g22000.1 68418.m02558 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 375
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 570 YHLRALGAWCERVGSWQAPSAWRS 641
YHL+ + WC+R S Q P W+S
Sbjct: 55 YHLQCILEWCQR--SSQCPMCWQS 76
>At4g24320.1 68417.m03491 hypothetical protein
Length = 395
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -2
Query: 623 GLPRSYAFAPCSQSPQVVSHSDHEPQLETTQSITPQVSRSRGNNLPIS 480
GLPR Y + P+ ++ + +L +++ +S SR NNLP+S
Sbjct: 156 GLPRDYITSLIGDYPEYFEVTEIKDRLTGEKTLALTIS-SRRNNLPVS 202
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 6 LCYSIPGFEITCQTSSRIYCVSDISRN*YLRRIE 107
LCYS G I +SR C+ DI+ LRR +
Sbjct: 587 LCYSADGGYILAAGTSRYICMYDIADQVLLRRFQ 620
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 6 LCYSIPGFEITCQTSSRIYCVSDISRN*YLRRIE 107
LCYS G I +SR C+ DI+ LRR +
Sbjct: 627 LCYSADGGYILAAGTSRYICMYDIADQVLLRRFQ 660
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,254,258
Number of Sequences: 28952
Number of extensions: 350159
Number of successful extensions: 955
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -