Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0052
(779 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 59 4e-09
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 59 4e-09
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 59 4e-09
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 57 1e-08
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ... 47 1e-05
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 37 0.017
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 32 0.49
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 31 0.65
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 31 0.65
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 31 0.65
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 30 1.5
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 30 1.5
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 30 2.0
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 30 2.0
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 29 2.6
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 29 2.6
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 2.6
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 29 2.6
At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing ... 29 2.6
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 29 3.5
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 29 3.5
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 29 3.5
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 29 4.6
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 29 4.6
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 29 4.6
At3g46300.1 68416.m05011 hypothetical protein 29 4.6
At5g60320.1 68418.m07560 lectin protein kinase family protein co... 28 6.0
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 28 6.0
At3g16785.1 68416.m02143 phospholipase D zeta1 / PLDzeta1 (PLDP1... 28 6.0
At2g20650.2 68415.m02422 zinc finger (C3HC4-type RING finger) fa... 28 6.0
At2g20650.1 68415.m02421 zinc finger (C3HC4-type RING finger) fa... 28 6.0
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 28 6.0
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 28 6.0
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 28 6.0
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 28 8.0
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 28 8.0
At3g30560.1 68416.m03867 hypothetical protein 28 8.0
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 28 8.0
At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family pro... 28 8.0
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 58.8 bits (136), Expect = 4e-09
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +2
Query: 509 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQP-MPGTENPAINVPAGVI 685
N +K FAF+E RS++E + AM+ DGI F+G +K+RRP DY P + T P+ P +
Sbjct: 283 NHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNL 342
Query: 686 STVVLIP 706
+ V L P
Sbjct: 343 AAVGLTP 349
Score = 31.5 bits (68), Expect = 0.65
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Frame = +3
Query: 222 AFALLGCTAAGFEHITPLQYKAMQAAGQIPANIVADTPQA-----AVPVVGST--ITRQA 380
A A+L AA + P + AG P T Q+ +P+ T TR A
Sbjct: 180 ASAMLAAGAAVTGQVPPAP-PTLPGAGMFPNMFPLPTGQSFGGLSMMPIQAMTQQATRHA 238
Query: 381 RRLYVGNIPFGVTEEETMEFFNQQMHLSG 467
RR+YVG + E+ FF+Q M G
Sbjct: 239 RRVYVGGLSPTANEQSVATFFSQVMAAVG 267
Score = 31.1 bits (67), Expect = 0.86
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 700 DSPHKIFIGGLPNYLNEDQVK 762
+ P +IF+GGLP Y E QV+
Sbjct: 356 EGPDRIFVGGLPYYFTESQVR 376
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 58.8 bits (136), Expect = 4e-09
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +2
Query: 509 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQP-MPGTENPAINVPAGVI 685
N +K FAF+E RS++E + AM+ DGI F+G +K+RRP DY P + T P+ P +
Sbjct: 283 NHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNL 342
Query: 686 STVVLIP 706
+ V L P
Sbjct: 343 AAVGLTP 349
Score = 31.5 bits (68), Expect = 0.65
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Frame = +3
Query: 222 AFALLGCTAAGFEHITPLQYKAMQAAGQIPANIVADTPQA-----AVPVVGST--ITRQA 380
A A+L AA + P + AG P T Q+ +P+ T TR A
Sbjct: 180 ASAMLAAGAAVTGQVPPAP-PTLPGAGMFPNMFPLPTGQSFGGLSMMPIQAMTQQATRHA 238
Query: 381 RRLYVGNIPFGVTEEETMEFFNQQMHLSG 467
RR+YVG + E+ FF+Q M G
Sbjct: 239 RRVYVGGLSPTANEQSVATFFSQVMAAVG 267
Score = 31.1 bits (67), Expect = 0.86
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 700 DSPHKIFIGGLPNYLNEDQVK 762
+ P +IF+GGLP Y E QV+
Sbjct: 356 EGPDRIFVGGLPYYFTESQVR 376
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 58.8 bits (136), Expect = 4e-09
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +2
Query: 509 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQP-MPGTENPAINVPAGVI 685
N +K FAF+E RS++E + AM+ DGI F+G +K+RRP DY P + T P+ P +
Sbjct: 283 NHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNL 342
Query: 686 STVVLIP 706
+ V L P
Sbjct: 343 AAVGLTP 349
Score = 31.5 bits (68), Expect = 0.65
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Frame = +3
Query: 222 AFALLGCTAAGFEHITPLQYKAMQAAGQIPANIVADTPQA-----AVPVVGST--ITRQA 380
A A+L AA + P + AG P T Q+ +P+ T TR A
Sbjct: 180 ASAMLAAGAAVTGQVPPAP-PTLPGAGMFPNMFPLPTGQSFGGLSMMPIQAMTQQATRHA 238
Query: 381 RRLYVGNIPFGVTEEETMEFFNQQMHLSG 467
RR+YVG + E+ FF+Q M G
Sbjct: 239 RRVYVGGLSPTANEQSVATFFSQVMAAVG 267
Score = 31.1 bits (67), Expect = 0.86
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 700 DSPHKIFIGGLPNYLNEDQVK 762
+ P +IF+GGLP Y E QV+
Sbjct: 356 EGPDRIFVGGLPYYFTESQVR 376
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 57.2 bits (132), Expect = 1e-08
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 6/67 (8%)
Frame = +2
Query: 509 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPM------PGTENPAINV 670
N +K FAF+E RS++E + AMA DGI +G +K+RRP DY P P NP +N+
Sbjct: 299 NHEKKFAFVEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNL 358
Query: 671 PAGVIST 691
A +S+
Sbjct: 359 GAVGLSS 365
Score = 36.7 bits (81), Expect = 0.017
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 306 IPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSG 467
+P + P V + TR ARR+YVG +P E+ FF+Q M G
Sbjct: 230 VPGQQLGALPVLPVQAMTQQATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIG 283
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 700 DSPHKIFIGGLPNYLNEDQVK 762
+ P +IF+GGLP Y E Q++
Sbjct: 372 EGPDRIFVGGLPYYFTEVQIR 392
>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 979
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/49 (40%), Positives = 31/49 (63%)
Frame = +2
Query: 485 QPCFGLPDNLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 631
+PC N +K+ A +EF + + + A++ DG +F G +LKIRRP DY
Sbjct: 914 EPCISCIINKEKSQALVEFLTPQDASAALSLDGCSFAGSNLKIRRPKDY 962
Score = 36.3 bits (80), Expect = 0.023
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 369 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGN-PVLACQI 509
TR+ RRLY N+P +E+ +E FN M SG G+ P ++C I
Sbjct: 874 TRRMRRLYAENVPDSASEKSLIECFNGYMLSSGSNHIKGSEPCISCII 921
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 36.7 bits (81), Expect = 0.017
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +1
Query: 712 KIFIGGLPNYLNEDQVKNYSC 774
KIF+GGLP L ED++KNY C
Sbjct: 158 KIFVGGLPPLLEEDELKNYFC 178
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 333 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 449
P PV + +A LY+G IP G E E FF+Q
Sbjct: 44 PARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQ 82
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 31.5 bits (68), Expect = 0.65
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +1
Query: 712 KIFIGGLPNYLNEDQVKNY 768
KIF+GGLP+ + E++ KNY
Sbjct: 111 KIFVGGLPSSITEEEFKNY 129
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +3
Query: 375 QARRLYVGNIPFGVTEEETMEFFNQ 449
+ ++++VG +P +TEEE +F+Q
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQ 132
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 31.5 bits (68), Expect = 0.65
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +1
Query: 712 KIFIGGLPNYLNEDQVKNY 768
KIF+GGLP+ + E++ KNY
Sbjct: 111 KIFVGGLPSSITEEEFKNY 129
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +3
Query: 375 QARRLYVGNIPFGVTEEETMEFFNQ 449
+ ++++VG +P +TEEE +F+Q
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQ 132
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 31.5 bits (68), Expect = 0.65
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +1
Query: 712 KIFIGGLPNYLNEDQVKNY 768
KIF+GGLP+ + E++ KNY
Sbjct: 111 KIFVGGLPSSITEEEFKNY 129
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +3
Query: 375 QARRLYVGNIPFGVTEEETMEFFNQ 449
+ ++++VG +P +TEEE +F+Q
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQ 132
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 384 RLYVGNIPFGVTEEETMEFFN 446
RL+V N+P+ TEEE ME F+
Sbjct: 262 RLFVRNLPYTATEEELMEHFS 282
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 524 FAFLEFRSIDETTQAMAFDGINFKGQSLKIR 616
FAFL F S +E A++F+G ++G+ + +R
Sbjct: 255 FAFLSFTSGEERDAALSFNGTQYEGRRIIVR 285
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 712 KIFIGGLPNYLNEDQVKNY 768
KIF+GGLP+ + E + KNY
Sbjct: 123 KIFVGGLPSSITEAEFKNY 141
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 518 KNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 613
+ FAF+ F S +E + AM DG + G+ +++
Sbjct: 75 RGFAFVTFTSTEEASNAMQLDGQDLHGRRIRV 106
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 381 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQA 479
R +++GN+PF V +EE + F + +L +A
Sbjct: 283 RTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEA 315
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 336 QAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 449
Q AV GS+I +LY+ N+ +GV+ E+ E F++
Sbjct: 94 QTAVVGGGSSI-ETGTKLYISNLDYGVSNEDIKELFSE 130
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 29.5 bits (63), Expect = 2.6
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = +1
Query: 706 PHKIFIGGLPNYLNEDQVKNY 768
P+K+++GG+P ED++++Y
Sbjct: 160 PNKLYVGGIPYQSTEDEIRSY 180
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 384 RLYVGNIPFGVTEEETMEFFNQ 449
RLYVGN+P+ +T E + F +
Sbjct: 117 RLYVGNLPYTITSSELSQIFGE 138
>At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q10572 Sex determination
protein fox-1 (Feminizing locus on X protein 1)
{Caenorhabditis elegans}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 381 RRLYVGNIPFGVTEEETMEFFNQ 449
R LY+ N+PF +T E+T + F +
Sbjct: 20 RLLYICNLPFSITSEDTYDLFGR 42
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 378 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAG 485
+R L+VGN+P G+ E E + F + L LA G
Sbjct: 22 SRHLWVGNLPHGILERELADRFLRFGELESLAFQPG 57
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/19 (47%), Positives = 17/19 (89%)
Frame = +1
Query: 712 KIFIGGLPNYLNEDQVKNY 768
KIF+GG+P+ + ED++K++
Sbjct: 110 KIFVGGIPSTVTEDELKDF 128
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 375 QARRLYVGNIPFGVTEEETMEFF 443
+ ++++VG IP VTE+E +FF
Sbjct: 107 KTKKIFVGGIPSTVTEDELKDFF 129
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/19 (47%), Positives = 17/19 (89%)
Frame = +1
Query: 712 KIFIGGLPNYLNEDQVKNY 768
KIF+GG+P+ + ED++K++
Sbjct: 110 KIFVGGIPSTVTEDELKDF 128
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 375 QARRLYVGNIPFGVTEEETMEFF 443
+ ++++VG IP VTE+E +FF
Sbjct: 107 KTKKIFVGGIPSTVTEDELKDFF 129
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 381 RRLYVGNIPFGVTEEETMEFFNQ 449
R LYV N+PF +T EE + F +
Sbjct: 19 RVLYVRNLPFNITSEEMYDIFGK 41
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 369 TRQARRLYVGNIPFGVTEEETMEFFNQ 449
+R +R +YVGN+P + E E + F++
Sbjct: 3 SRSSRTIYVGNLPGDIREREVEDLFSK 29
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 369 TRQARRLYVGNIPFGVTEEETMEFFNQ 449
+R +R +YVGN+P + E E + F++
Sbjct: 3 SRSSRTIYVGNLPGDIREREVEDLFSK 29
>At3g46300.1 68416.m05011 hypothetical protein
Length = 141
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 254 VRAYHAITIQGDASG-GSDSCQYCRRHTTSCRAGGGFDYNTSSAKVICRQHTLWRHR 421
+R+Y T + + G G D RRH SC GGG +AK R + W R
Sbjct: 64 LRSYTFSTEENEEDGDGGDGEAVTRRHNQSCFRGGG--GRKKAAKNAMRNNKTWSCR 118
>At5g60320.1 68418.m07560 lectin protein kinase family protein
contains Pfam domains, PF00069: Protein kinase domain,
PF00139: Legume lectins beta domain, and PF00138: Legume
lectins alpha domain
Length = 675
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +2
Query: 506 DNLDKNFAFLEFRSID--ETTQAMAFDGINFKGQSLKIRRPHDYQPMPGTENPAINVPAG 679
D++DKN ++ +S++ E+ A F K QS+K+ Q E +NV
Sbjct: 154 DDIDKNHVGIDIKSLNSVESASASYFSNAKGKNQSIKLLSGDPIQIWVDYEGALLNVTVA 213
Query: 680 VIS 688
+S
Sbjct: 214 PLS 216
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 372 RQARRLYVGNIPFGVTEEETMEFFNQ 449
RQ +++VGN+P + + E EFF Q
Sbjct: 162 RQEGKIFVGNLPTWIKKPEFEEFFRQ 187
>At3g16785.1 68416.m02143 phospholipase D zeta1 / PLDzeta1 (PLDP1)
identical to phospholipase D zeta1 [Arabidopsis
thaliana] GI:15723315, SP|Q9LRZ5 Phospholipase D p1 (EC
3.1.4.4) (AtPLDp1) (Phospholipase D1 PHOX and PX
containing domain) (Phospholipase D zeta 1) (PLDzeta1)
{Arabidopsis thaliana}; supported by cDNA gi:15723314;
non-consensus splice site (GC) at the beginning of first
intron.
Length = 1096
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 628 LPAYARH*KPSNKCACWCY*HCCTDSPHKIFIGGLPNYL 744
LP +++ SN+C C+ CC D+ K++ P +L
Sbjct: 226 LPKFSKSDDDSNRCCGCCWFCCCNDNWQKVWGVLKPGFL 264
>At2g20650.2 68415.m02422 zinc finger (C3HC4-type RING finger)
family protein
Length = 559
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 303 QIPANIVADTPQAAVP--VVGSTITRQARRLYVGNIP 407
QI AN+V D+ + P ++G T+TR A LYV P
Sbjct: 409 QIVANVVRDSRKPLHPYYILGMTVTRLAIPLYVFGCP 445
>At2g20650.1 68415.m02421 zinc finger (C3HC4-type RING finger)
family protein
Length = 559
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 303 QIPANIVADTPQAAVP--VVGSTITRQARRLYVGNIP 407
QI AN+V D+ + P ++G T+TR A LYV P
Sbjct: 409 QIVANVVRDSRKPLHPYYILGMTVTRLAIPLYVFGCP 445
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 369 TRQARRLYVGNIPFGVTEEETMEFFNQ 449
+R +R +YVGN+P + E E + F++
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSK 29
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 369 TRQARRLYVGNIPFGVTEEETMEFFNQ 449
+R +R +YVGN+P + E E + F++
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSK 29
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 369 TRQARRLYVGNIPFGVTEEETMEFFNQ 449
+R +R +YVGN+P + E E + F++
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSK 29
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 372 RQARRLYVGNIPFGVTEEETMEFFNQ 449
R + +Y+GN+ F TEE+ E F++
Sbjct: 31 RASTTVYIGNVSFYTTEEQLYELFSR 56
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 378 ARRLYVGNIPFGVTEEE 428
ARR+Y+GNIP VT E+
Sbjct: 75 ARRVYIGNIPRTVTNEQ 91
>At3g30560.1 68416.m03867 hypothetical protein
Length = 1473
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = -3
Query: 591 KLIPSKAIACVVSSIDLNSRNAKFLSKLSGKPKQGCRRPGPGPIDAFVD*KTPLF 427
K +AI C + D+NS N LSKL+G+ K P D D K P++
Sbjct: 1255 KFFQDRAILCPTND-DVNSINDHMLSKLTGEEKIYRSSDSIDPSDTRAD-KNPVY 1307
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 375 QARRLYVGNIPFGVTEEETME 437
Q R ++VGNIP+ TEE+ E
Sbjct: 7 QRRCVFVGNIPYDATEEQLRE 27
>At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family
protein similar to ubiquitin-conjugating enzyme
GB:3319990 from [Mus musculus]; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 1163
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -2
Query: 142 NVFFLGIETFVGGLYLPPSYLRKYVIQ*LFLEI--VIKALQRY 20
NVF L ++T V + PP + +YV F+ ++KA Y
Sbjct: 421 NVFLLSLKTMVYSIRRPPQHFEEYVQNHYFVRSHDIVKACNAY 463
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -2
Query: 142 NVFFLGIETFVGGLYLPPSYLRKYVIQ*LFLEI--VIKALQRY 20
NVF L ++T V + PP + +YV F+ ++KA Y
Sbjct: 1041 NVFLLSLKTMVYSMRKPPQHFEEYVQNHYFVRSHDIVKACNAY 1083
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,351,202
Number of Sequences: 28952
Number of extensions: 355908
Number of successful extensions: 1003
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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