Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0045
(812 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g02390.1 68417.m00323 poly (ADP-ribose) polymerase / NAD(+) A... 72 4e-13
At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative ... 69 3e-12
At5g22470.1 68418.m02621 poly (ADP-ribose) polymerase family pro... 38 0.010
At4g35770.1 68417.m05078 senescence-associated protein (SEN1) id... 34 0.098
At1g24070.1 68414.m03038 glycosyl transferase family 2 protein s... 31 0.91
At3g21140.1 68416.m02671 expressed protein 31 1.2
At5g23650.1 68418.m02773 myb family transcription factor contain... 29 3.7
At4g20060.1 68417.m02935 expressed protein ; expression support... 29 3.7
At5g16190.1 68418.m01892 glycosyl transferase family 2 protein s... 29 4.9
At3g11450.1 68416.m01396 DNAJ heat shock N-terminal domain-conta... 28 6.4
At3g10800.1 68416.m01300 bZIP transcription factor family protei... 28 8.5
At2g05710.1 68415.m00611 aconitate hydratase, cytoplasmic, putat... 28 8.5
>At4g02390.1 68417.m00323 poly (ADP-ribose) polymerase / NAD(+)
ADP-ribosyltransferase / poly[ADP-ribose] synthetase
(APP) identical to SP|Q11207 Poly [ADP-ribose]
polymerase (EC 2.4.2.30) (PARP) (ADPRT) (NAD(+) ADP-
ribosyltransferase) (Poly[ADP-ribose] synthetase)
{Arabidopsis thaliana}
Length = 637
Score = 72.1 bits (169), Expect = 4e-13
Identities = 36/100 (36%), Positives = 56/100 (56%)
Frame = +3
Query: 510 LLQSDTDDTVSPIEGHYKKLKAEIAPLDKTTDEFEMILEYVRNTHGKTHNFYTLNVEEVF 689
LL D P+ HY++L + P+ ++EF M+ Y+ NTH KTH+ YT+ + ++F
Sbjct: 402 LLSVDPGLQDDPLYYHYQQLNCGLTPVGNDSEEFSMVANYMENTHAKTHSGYTVEIAQLF 461
Query: 690 KVIREGEDKRYQALSRNSTTGRLLWHGFPQPXXFAGFISQ 809
+ R E R+Q S +S LLWHG + +AG +SQ
Sbjct: 462 RASRAVEADRFQQFS-SSKNRMLLWHG-SRLTNWAGILSQ 499
Score = 64.5 bits (150), Expect = 8e-11
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Frame = +1
Query: 235 LARIRVGTEKMPLGKLSKKQIKAGYKVLSELQNLIKSGDASRNKIVDATNRFFTLIPHDF 414
+ I K+PLGK+SK I GY+VL + +I D R ++ + + F+T+IPHDF
Sbjct: 310 MMEIGYNANKLPLGKISKSTISKGYEVLKRISEVIDRYD--RTRLEELSGEFYTVIPHDF 367
Query: 415 GVNNAP--LLDNNEIIKTKTDMMDNLLEIEIA 504
G ++D + +K K +M++ L EIE+A
Sbjct: 368 GFKKMSQFVIDTPQKLKQKIEMVEALGEIELA 399
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +2
Query: 11 DNALDRFQALYEEKTENRWKDRNNFVKIPGRYFPLEIDYGDNE 139
D A++ F + +KT+N W DR F+ P Y LE+DYG E
Sbjct: 224 DRAIEIFTNKFNDKTKNYWSDRKEFIPHPKSYTWLEMDYGKEE 266
>At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative /
NAD(+) ADP-ribosyltransferase, putative /
poly[ADP-ribose] synthetase, putative similar to
poly(ADP)-ribose polymerase [Zea mays] GI:3928871 ;
contains Pfam profiles PF00644: Poly(ADP-ribose)
polymerase catalytic domain, PF00645: Poly(ADP-ribose)
polymerase and DNA-Ligase Zn-finger region, PF02877:
Poly(ADP-ribose) polymerase, regulatory domain, PF00533:
BRCA1 C Terminus (BRCT) domain
Length = 983
Score = 69.3 bits (162), Expect = 3e-12
Identities = 35/96 (36%), Positives = 54/96 (56%)
Frame = +3
Query: 522 DTDDTVSPIEGHYKKLKAEIAPLDKTTDEFEMILEYVRNTHGKTHNFYTLNVEEVFKVIR 701
D D T S ++ YKKL +I+PL ++++ +I +Y+ TH TH ++L +EEVF + R
Sbjct: 753 DVDSTES-LDDKYKKLHCDISPLPHDSEDYRLIEKYLNTTHAPTHTEWSLELEEVFALER 811
Query: 702 EGEDKRYQALSRNSTTGRLLWHGFPQPXXFAGFISQ 809
EGE +Y LLWHG + F G ++Q
Sbjct: 812 EGEFDKYAPHREKLGNKMLLWHG-SRLTNFVGILNQ 846
Score = 61.7 bits (143), Expect = 6e-10
Identities = 34/98 (34%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Frame = +1
Query: 223 HEADLARIRVGTEKMPLGKLSKKQIKAGYKVLSELQNLIKSGD----ASRNKIVDATNRF 390
+ + + + +MPLGKLSK I+ G++ L+E+Q L+ D + +VDA+NRF
Sbjct: 653 YRSAMMEFEINMSEMPLGKLSKHNIQKGFEALTEIQRLLTESDPQPTMKESLLVDASNRF 712
Query: 391 FTLIPHDFGVNNAPLLDNNEIIKTKTDMMDNLLEIEIA 504
FT+IP ++ + D ++ K+K M++ L +IEIA
Sbjct: 713 FTMIP---SIHPHIIRDEDD-FKSKVKMLEALQDIEIA 746
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Frame = +2
Query: 14 NALDRFQALYEEKTENRWKD---RNNFVKIPGRYFPLEIDYGDNE--TKTLTVDPKCELA 178
+A+ F+ L+ EKT N W+ + NF K PG++ PL+IDYG N+ K LA
Sbjct: 578 DAVHEFKRLFLEKTGNTWESWEQKTNFQKQPGKFLPLDIDYGVNKQVAKKEPFQTSSNLA 637
Query: 179 EPVQRLIVTIFDIHYMKQTLLEFEL 253
+ L+ +FD+ + ++EFE+
Sbjct: 638 PSLIELMKMLFDVETYRSAMMEFEI 662
>At5g22470.1 68418.m02621 poly (ADP-ribose) polymerase family
protein similar to poly(ADP)-ribose polymerase [Zea
mays] GI:3928871; contains Pfam profiles PF00644:
Poly(ADP-ribose) polymerase catalytic domain, PF00533:
BRCA1 C Terminus (BRCT) domain, PF05406: WGR domain
Length = 815
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/64 (31%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Frame = +3
Query: 513 LQSDTDDTVSPIEGHYKKLKAEIAPLDKTTDEFEMILEYVRNTHG--KTHNF-YTLNVEE 683
++ DT D P+ YKKL +I+ +DK +++++M+++Y+ T+ K + Y ++V+
Sbjct: 571 MRGDTLD--DPLSDRYKKLGCKISVVDKESEDYKMVVKYLETTYEPVKVSDVEYGVSVQN 628
Query: 684 VFKV 695
VF V
Sbjct: 629 VFAV 632
>At4g35770.1 68417.m05078 senescence-associated protein (SEN1)
identical to senescence-associated protein GI:1046270
from [Arabidopsis thaliana]
Length = 182
Score = 34.3 bits (75), Expect = 0.098
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -3
Query: 588 AALSPPSASCSGLRWGSPCRQCLIVIDIRNFNFQ 487
+A+SPP +C + P R+ +IV D+RN NF+
Sbjct: 17 SAISPPLQTCGSFKCQLPTRRGVIVADLRNSNFR 50
>At1g24070.1 68414.m03038 glycosyl transferase family 2 protein
similar to beta-(1-3)-glucosyl transferase GB:AAC62210
GI:3687658 from [Bradyrhizobium japonicum], cellulose
synthase from Agrobacterium tumeficiens [gi:710492] and
Agrobacterium radiobacter [gi:710493]; contains Pfam
glycosyl transferase, group 2 family protein domain
PF00535
Length = 552
Score = 31.1 bits (67), Expect = 0.91
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Frame = +2
Query: 14 NALDRFQALYEEKTEN--RWKDRNNFVKIPGRYFPLEID----YGDNETKTLTVDPKCEL 175
N + + ++E K E RW+ +++ +P+ + Y + E L++ C L
Sbjct: 88 NLVVLYVKVFERKPEKVYRWEAMQEDIELGHETYPMVLVQIPMYNEKEVLQLSIGAACRL 147
Query: 176 AEPVQRLIVTIFD 214
P+ RLIV + D
Sbjct: 148 IWPLDRLIVQVLD 160
>At3g21140.1 68416.m02671 expressed protein
Length = 387
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +2
Query: 26 RFQALYEEKTENRWKDRNNFVKIPGRYFPLEID-YGDN---ETKTLTVDPKCELAEP 184
R QAL +T + +D N F PG F L + G N ET +D + LA P
Sbjct: 56 RIQALLRNETPSEGEDNNGFGFFPGDIFSLSQEKLGSNSNGETSHSVIDVEASLAHP 112
>At5g23650.1 68418.m02773 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 337
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 2 KDLDNALDRFQALYEEKTENRWK 70
KD D A ++ A+Y +KTE RWK
Sbjct: 15 KDDDIAFEKALAIYNDKTEIRWK 37
>At4g20060.1 68417.m02935 expressed protein ; expression supported
by MPSS
Length = 1134
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 271 LGKLSKKQIKAGYKVLSELQNLIK 342
LG+L +AGY V+SE+Q+L+K
Sbjct: 419 LGRLCSDLFRAGYAVVSEVQDLLK 442
>At5g16190.1 68418.m01892 glycosyl transferase family 2 protein
similar to cellulose synthase from Agrobacterium
tumeficiens [gi:710492] and Agrobacterium radiobacter
[gi:710493]; contains Pfam glycosyl transferase, group 2
family protein domain PF00535
Length = 504
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +2
Query: 62 RWKDRNNFVKIPGRYFPLEID----YGDNETKTLTVDPKCELAEPVQRLIVTIFD 214
+W+ +++ + FP+ + Y + E L++ C L P+ RLIV + D
Sbjct: 58 KWEAMQEDLELGNQNFPMVLVQIPMYNEREVFKLSIGAACRLIWPLDRLIVQVLD 112
>At3g11450.1 68416.m01396 DNAJ heat shock N-terminal
domain-containing protein / cell division
protein-related similar to GlsA [Volvox carteri f.
nagariensis] GI:4633129; contains Pfam profiles PF00226
DnaJ domain, PF00249 Myb-like DNA-binding domain
Length = 663
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 238 ARIRVGTEKMPLGKLSKK-QIKAGYKVLSELQNLIKSGDASRNKIVDATNRFFTLIPHD 411
A ++ +K+ K +KK +I++ +K + E ++ D +R +I D+T+ F +P D
Sbjct: 150 AALKHHPDKLAKAKEAKKDEIESRFKAIQEAYEVLM--DPTRRRIFDSTDEFDDEVPSD 206
>At3g10800.1 68416.m01300 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; contains similarity to TGACG-sequence specific
DNA-binding protein TGA-1B (HSBF) GB:P14233 [Nicotiana
tabacum]
Length = 675
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 139 LIVTVVYFQREVSPRNLDKVIPVFPTVLS-FFFVQRLESVQSV 14
++V+V+ REV D+V+P P LS F V L+SV+ V
Sbjct: 617 MVVSVLLDPREVVDSETDRVVPPNPKSLSRIFVVVLLDSVKYV 659
>At2g05710.1 68415.m00611 aconitate hydratase, cytoplasmic, putative
/ citrate hydro-lyase/aconitase, putative nearly
identical to SP|P49608 Aconitate hydratase, cytoplasmic
(EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase)
{Cucurbita maxima}; contains Pfam profiles PF00330:
Aconitase family (aconitate hydratase), PF00694:
Aconitase C-terminal domain
Length = 990
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/71 (26%), Positives = 36/71 (50%)
Frame = -2
Query: 613 SNSSVVLSSGAISAFSFL*WPSMGLTVSSVSDCNRHTQFQFPTGYPSYRSSSL*FHYYPT 434
++SS++ ++ + S+ F + +VSS S + + F T P++R S FH P+
Sbjct: 9 ASSSIIRAASSRSSSLFSFRSVLSPSVSSTSPSSLLARRSFGTISPAFRRWSHSFHSKPS 68
Query: 433 AVRYLPRSRGV 401
R+ + R V
Sbjct: 69 PFRFTSQIRAV 79
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,176,273
Number of Sequences: 28952
Number of extensions: 357522
Number of successful extensions: 1079
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -