BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0084 (833 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g39870.1 68417.m05649 expressed protein hypothetical protein,... 50 3e-06 At2g05590.2 68415.m00595 expressed protein similar to nucleolar ... 44 1e-04 At5g06260.1 68418.m00700 nucleolar protein-related contains weak... 35 0.058 At1g33610.1 68414.m04160 leucine-rich repeat family protein cont... 32 0.41 At5g45510.1 68418.m05590 leucine-rich repeat family protein cont... 32 0.54 At5g14940.1 68418.m01753 proton-dependent oligopeptide transport... 32 0.54 At1g70730.1 68414.m08153 phosphoglucomutase, cytoplasmic, putati... 31 0.94 At3g02930.1 68416.m00288 expressed protein ; expression support... 31 1.2 At3g19750.1 68416.m02500 hypothetical protein 30 1.6 At3g01160.1 68416.m00020 expressed protein 30 2.2 At4g10070.1 68417.m01647 KH domain-containing protein DNA-direct... 29 5.0 At2g41210.1 68415.m05089 phosphatidylinositol-4-phosphate 5-kina... 29 5.0 At2g26190.1 68415.m03145 calmodulin-binding family protein conta... 29 5.0 At1g78110.1 68414.m09103 expressed protein 29 5.0 At4g27310.1 68417.m03918 zinc finger (B-box type) family protein... 28 6.6 At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta... 28 6.6 At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 28 6.6 At3g07960.1 68416.m00973 phosphatidylinositol-4-phosphate 5-kina... 28 6.6 At5g05480.1 68418.m00590 expressed protein 28 8.8 At2g44430.1 68415.m05525 DNA-binding bromodomain-containing prot... 28 8.8 >At4g39870.1 68417.m05649 expressed protein hypothetical protein, Schizosaccharomyces cerevisae, Z99168 Length = 394 Score = 49.6 bits (113), Expect = 3e-06 Identities = 23/64 (35%), Positives = 38/64 (59%) Frame = +1 Query: 247 GRHMYFIRGSNDNISIGAGDGKFGLWLDGDLYLGRTQRCKTYGNEPLTTREDFIVKIMEC 426 G + ++ S + +++G G G+F L+LD +L G + +TYGN L +DF VK +E Sbjct: 309 GANRFYTLCSKEFLALGGG-GRFALYLDSELLSGSSAYSETYGNSCLADSQDFDVKEVEL 367 Query: 427 WTFI 438 W F+ Sbjct: 368 WGFV 371 >At2g05590.2 68415.m00595 expressed protein similar to nucleolar protein C7C (GI:13540302) [Rattus norvegicus] Length = 303 Score = 44.0 bits (99), Expect = 1e-04 Identities = 22/63 (34%), Positives = 35/63 (55%) Frame = +1 Query: 247 GRHMYFIRGSNDNISIGAGDGKFGLWLDGDLYLGRTQRCKTYGNEPLTTREDFIVKIMEC 426 G + Y++ N+ ++ G G G F L LD DL + +T+GNE L + +F +K +E Sbjct: 234 GANRYYLMCMNEFLAFGGG-GNFALCLDEDLLKATSGPSETFGNECLASSTEFELKNVEL 292 Query: 427 WTF 435 W F Sbjct: 293 WGF 295 >At5g06260.1 68418.m00700 nucleolar protein-related contains weak similarity to nucleolar protein C7C (GI:13540302) [Rattus norvegicus] Length = 424 Score = 35.1 bits (77), Expect = 0.058 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%) Frame = +1 Query: 274 SNDNISIGAGDG----KFGLWLDGDLYLGRTQRCKTYGNEPLTTREDFIVKIMECWTFI 438 +++NI G G G FGL++ G+T C T+G+ L+ +++ECW + Sbjct: 327 TSENIPNGIGFGGKINHFGLFISASFDQGQTFECTTFGSPSLSKTSRIQPEVIECWGIV 385 >At1g33610.1 68414.m04160 leucine-rich repeat family protein contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611 Length = 907 Score = 32.3 bits (70), Expect = 0.41 Identities = 17/54 (31%), Positives = 30/54 (55%) Frame = -1 Query: 434 KVQHSMIFTMKSSRVVSGSLPYVLHRCVRPKYRSPSSHRPNFPSPAPIDILSLL 273 K+QH + ++ ++GS P L + + +Y ++R + P PA I +LSLL Sbjct: 100 KLQHLSVISLGGHVNITGSFPKFLLQLPKLRYVDIQNNRLSGPLPANIGVLSLL 153 >At5g45510.1 68418.m05590 leucine-rich repeat family protein contains leucine rich repeat (LRR) domains, Pfam:PF00560 Length = 1222 Score = 31.9 bits (69), Expect = 0.54 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 6/73 (8%) Frame = +2 Query: 89 QRIEEDTSPGAHGPVHADDAN---KETDSDNQSD---AKKEDNEQSQTVKTKFKYWGWTG 250 Q EE T G H A+D+ K+ D+D + + A KE+ E VKT+ K+ Sbjct: 265 QETEEATKSGEHAEGEANDSQSGEKKEDTDGEDEIRSADKEEPESQARVKTEEKHEKVVP 324 Query: 251 DTCISFVGATTIY 289 T G+T Y Sbjct: 325 PTIDDLWGSTNTY 337 >At5g14940.1 68418.m01753 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family Length = 552 Score = 31.9 bits (69), Expect = 0.54 Identities = 15/50 (30%), Positives = 23/50 (46%) Frame = +2 Query: 137 ADDANKETDSDNQSDAKKEDNEQSQTVKTKFKYWGWTGDTCISFVGATTI 286 AD + + D DN + E+ E KT+F W + G S +G T + Sbjct: 139 ADQLDYDLDHDNDHEPSSENKEVKSNRKTQFFQWWYFGVCAGSLLGVTVM 188 >At1g70730.1 68414.m08153 phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative strong similarity to SP|P93804 Phosphoglucomutase, cytoplasmic 1 (EC 5.4.2.2) (Glucose phosphomutase 1) (PGM 1) {Zea mays}; contains InterPro accession IPR006352: Phosphoglucosamine mutase Length = 585 Score = 31.1 bits (67), Expect = 0.94 Identities = 15/35 (42%), Positives = 23/35 (65%) Frame = -3 Query: 609 TRSHYKNSDSTASKRRIDRFVKVSNFRSKVHKIIK 505 TR Y+N D+TA+K + VK+ + +V+KIIK Sbjct: 448 TRYDYENVDATAAKELMGLLVKLQSSLPEVNKIIK 482 >At3g02930.1 68416.m00288 expressed protein ; expression supported by MPSS Length = 806 Score = 30.7 bits (66), Expect = 1.2 Identities = 11/33 (33%), Positives = 19/33 (57%) Frame = +2 Query: 140 DDANKETDSDNQSDAKKEDNEQSQTVKTKFKYW 238 D N + + D + KKE + + +TV+ +FK W Sbjct: 701 DGMNMKLEEDTEKKEKKERSPEDETVEVEFKMW 733 >At3g19750.1 68416.m02500 hypothetical protein Length = 378 Score = 30.3 bits (65), Expect = 1.6 Identities = 11/38 (28%), Positives = 23/38 (60%) Frame = +2 Query: 98 EEDTSPGAHGPVHADDANKETDSDNQSDAKKEDNEQSQ 211 EE S G + AD++ E+D++ S A+ E++ +++ Sbjct: 266 EESESDGENAEAEADESTTESDAEEDSSAQSEEDSEAK 303 >At3g01160.1 68416.m00020 expressed protein Length = 380 Score = 29.9 bits (64), Expect = 2.2 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = +2 Query: 95 IEEDTSPGAHGPVHADDANKETDSDNQSDAKKEDNEQSQTVKT 223 +++ P H V A +E +SD +KKE +E + TVK+ Sbjct: 300 LKQKEDPKGHEDVKAPKEKQELNSDGNLGSKKERHELTSTVKS 342 >At4g10070.1 68417.m01647 KH domain-containing protein DNA-directed RNA polymerase (EC 2.7.7.6) II largestchain - mouse, PIR2:A28490 Length = 725 Score = 28.7 bits (61), Expect = 5.0 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = +2 Query: 101 EDTSPGAHGPVHADDANKETDSDNQSDAKKEDNE 202 ED + G H V DD+ + D +Q + K+E+ E Sbjct: 127 EDVNGGEHQKVIDDDSKEVNDGSSQENGKEENKE 160 >At2g41210.1 68415.m05089 phosphatidylinositol-4-phosphate 5-kinase family protein similar to phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains Pfam profiles PF01504: Phosphatidylinositol-4-phosphate 5-Kinase, PF02493: MORN repeat Length = 772 Score = 28.7 bits (61), Expect = 5.0 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +1 Query: 301 GDGKFGLWLDGDLYLGRTQRCKTYGN 378 G GK+ LW DG +Y+G KT GN Sbjct: 86 GHGKY-LWTDGCMYIGDWYNGKTMGN 110 >At2g26190.1 68415.m03145 calmodulin-binding family protein contains Pfam profile PF00612: IQ calmodulin-binding motif Length = 532 Score = 28.7 bits (61), Expect = 5.0 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = -1 Query: 338 RSPSSHRPNFPSPAPIDILSLLPRMKYMCLPS 243 R PS + P PSP P + + PR+ YM +PS Sbjct: 495 RFPSPYGP-IPSPRPSPRVRVSPRLAYMGIPS 525 >At1g78110.1 68414.m09103 expressed protein Length = 342 Score = 28.7 bits (61), Expect = 5.0 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +2 Query: 122 HGPVHADDANKETDSDNQSDAKKEDNEQSQTVKTKFKYW 238 H V +DD +E D D++ + E E+ + KT F W Sbjct: 165 HADVTSDDDEEEDDDDDEEEEVVE-GEEEENSKTVFSKW 202 >At4g27310.1 68417.m03918 zinc finger (B-box type) family protein zinc-finger protein S3574, Oryza sativa, PIR3:JE0113 Length = 223 Score = 28.3 bits (60), Expect = 6.6 Identities = 14/59 (23%), Positives = 25/59 (42%) Frame = +2 Query: 71 SFLYSFQRIEEDTSPGAHGPVHADDANKETDSDNQSDAKKEDNEQSQTVKTKFKYWGWT 247 SF RI ED G + DD ++ D + D ++D+E + + + W+ Sbjct: 99 SFESEEDRIREDHGDGDDAESYDDDEEEDEDEEYSDDEDEDDDEDGDDEEAENQVVPWS 157 >At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), putative similar to nucleosome assembly protein 1 [Glycine max] GI:1161252; contains Pfam profile PF00956: Nucleosome assembly protein (NAP) Length = 372 Score = 28.3 bits (60), Expect = 6.6 Identities = 10/31 (32%), Positives = 20/31 (64%) Frame = +2 Query: 140 DDANKETDSDNQSDAKKEDNEQSQTVKTKFK 232 DD +++ D +++ D + +D+E + KTK K Sbjct: 313 DDIDEDEDEEDEEDEEDDDDEDEEESKTKKK 343 >At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif Length = 374 Score = 28.3 bits (60), Expect = 6.6 Identities = 10/29 (34%), Positives = 19/29 (65%) Frame = +2 Query: 140 DDANKETDSDNQSDAKKEDNEQSQTVKTK 226 + NK+ + D+ D++ +D+ +S VKTK Sbjct: 254 ESLNKDYEGDSTQDSRDQDDSESPPVKTK 282 >At3g07960.1 68416.m00973 phosphatidylinositol-4-phosphate 5-kinase family protein similar to phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains Pfam profiles PF01504: Phosphatidylinositol-4-phosphate 5-Kinase, PF02493: MORN repeat Length = 715 Score = 28.3 bits (60), Expect = 6.6 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +1 Query: 301 GDGKFGLWLDGDLYLGRTQRCKTYG 375 G GK+ LW DG +Y+G R KT G Sbjct: 43 GHGKY-LWTDGCMYVGDWHRGKTMG 66 >At5g05480.1 68418.m00590 expressed protein Length = 608 Score = 27.9 bits (59), Expect = 8.8 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = +1 Query: 241 MDGRHMYFIRGSNDNISIGAGDGKFGLWLD 330 +DG+ F G ND IS D LWLD Sbjct: 348 LDGKSHEFAFGVNDGISYWLVDANLHLWLD 377 >At2g44430.1 68415.m05525 DNA-binding bromodomain-containing protein contains Pfam domains, Pfam PF00439: Bromodomain and PF00249: Myb-like DNA-binding domain Length = 646 Score = 27.9 bits (59), Expect = 8.8 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +2 Query: 92 RIEEDTSPGAHGPVHADDANKETDSD-NQSDAKKEDNEQSQTVKTKFKYWG 241 R EE+ G++ ++ DD N + +D +ED + S T K++ + WG Sbjct: 2 RKEEEEEAGSYN-MNVDDTNNNNNYICTDNDYIEEDEDNSNTKKSQTQAWG 51 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,256,053 Number of Sequences: 28952 Number of extensions: 318395 Number of successful extensions: 1179 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 1096 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1168 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1921616800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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