Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0065
         (759 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67280.1 68418.m08483 leucine-rich repeat transmembrane prote...    30   1.5  
At4g12030.2 68417.m01913 bile acid:sodium symporter family prote...    30   1.9  
At5g66850.1 68418.m08428 protein kinase family protein contains ...    29   4.4  
At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal hydrolase-r...    28   7.7  

>At5g67280.1 68418.m08483 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 751

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
 Frame = +2

Query: 68  ENQTITPTSRWSNNSSD----QWH--RSGRHNCEQCQE*RERVLPVREHGGAGHGL-QGL 226
           + +T+T TS+WS +S+D    +W+  R   +    C+E  E            + +    
Sbjct: 364 KRKTVTATSKWSTSSTDSKVSKWYCLRKSVYVDGDCEEEEEESETSESESDEENPVGPNR 423

Query: 227 RAEVHDQQGSNSLQNLENQREI 292
           R+ + DQ+   +L NL++++E+
Sbjct: 424 RSGLDDQEKKGTLVNLDSEKEL 445


>At4g12030.2 68417.m01913 bile acid:sodium symporter family protein
           low similarity to SP|Q12908 Ileal sodium/bile acid
           cotransporter {Homo sapiens}; contains Pfam profile
           PF01758: Sodium Bile acid symporter family
          Length = 407

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 545 RCAIVNVGYCSLDFPGKKKSFSQNIPLLHP 634
           R +  ++G CS+DFP +    SQN   +HP
Sbjct: 41  RNSFSSLGSCSVDFPLRSNPISQNSKSIHP 70


>At5g66850.1 68418.m08428 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain; identical
           to cDNA MAP3K gamma protein kinase GI:2315152
          Length = 716

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 420 HSSFRDFESRNRNSSEVQYPTLNIAHRP 503
           +SS++DF  RNRN   V  PT++    P
Sbjct: 163 NSSYQDFSPRNRNGYWVNIPTMSAPTSP 190


>At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1132

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 68  ENQTITPTSRWSNNSSDQWHRSGRHNCEQCQE 163
           EN  ++   R  N   DQW R     C+ C+E
Sbjct: 553 ENMCVSENERRKNLPEDQWSRYASLLCDVCEE 584


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,692,670
Number of Sequences: 28952
Number of extensions: 310361
Number of successful extensions: 779
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)