Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0094
         (1287 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80070.1 68414.m09373 splicing factor, putative strong simila...   338   4e-93
At4g38780.1 68417.m05491 splicing factor, putative strong simila...   319   2e-87
At3g03470.1 68416.m00345 cytochrome P450, putative similar to cy...    31   2.2  
At1g48790.1 68414.m05460 mov34 family protein similar to AMSH [H...    31   2.2  
At1g10600.1 68414.m01200 mov34 family protein similar to AMSH [H...    30   3.8  
At3g11030.1 68416.m01331 expressed protein contains Pfam domain ...    29   5.0  
At1g64940.1 68414.m07361 cytochrome P450, putative similar to cy...    29   6.6  
At1g64950.1 68414.m07362 cytochrome P450, putative similar to cy...    29   8.7  
At1g15780.1 68414.m01893 expressed protein                             29   8.7  

>At1g80070.1 68414.m09373 splicing factor, putative strong similarity
            to splicing factor Prp8 [Homo sapiens] GI:3661610;
            contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
          Length = 2382

 Score =  338 bits (831), Expect = 4e-93
 Identities = 143/224 (63%), Positives = 174/224 (77%)
 Frame = -2

Query: 815  KXVTIXXLRAQIACYLYGTSPSDNPMXREVHCAVLPPQWGTHQQVHLPKHLPKHPALAHL 636
            K + +  LR QIA YLYG SP DNP  +E+ C V+ PQWG HQ VHLP  LP+H  L  L
Sbjct: 2160 KFICVADLRTQIAGYLYGISPPDNPQVKEIRCVVMVPQWGNHQLVHLPSSLPEHDFLNDL 2219

Query: 635  QPLGWMHTQPNELPQLSPQDITTHAKIMSDNSSWDGEKTIIITCSFTPGSCSLTAYKLTP 456
            +PLGW+HTQPNELPQLSPQD+T+H++I+ +N  WDGEK II+TCSFTPGSCSLT+YKLT 
Sbjct: 2220 EPLGWLHTQPNELPQLSPQDVTSHSRILENNKQWDGEKCIILTCSFTPGSCSLTSYKLTQ 2279

Query: 455  SGYEWGVRNTDRGNNPKGYLPSHYERVQMLLSDRFLGYFMVPSQGSWNYNFMGVRHDPNM 276
            +GYEWG  N D G+NP GYLP+HYE+VQMLLSDRFLG++MVP  G WNY+F GV+H  +M
Sbjct: 2280 TGYEWGRLNKDNGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPESGPWNYSFTGVKHTLSM 2339

Query: 275  KYGVQLGNPREFYHEVHRPAHFMNFAAMEDAAAPTIAADREDLF 144
            KY V+LG+P+EFYHE HRP HF+ F+ ME+  A     DRED F
Sbjct: 2340 KYSVKLGSPKEFYHEEHRPTHFLEFSNMEE--ADITEGDREDTF 2381


>At4g38780.1 68417.m05491 splicing factor, putative strong similarity
            to splicing factor Prp8 [Homo sapiens] GI:3661610;
            contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
          Length = 2332

 Score =  319 bits (784), Expect = 2e-87
 Identities = 136/225 (60%), Positives = 166/225 (73%)
 Frame = -2

Query: 815  KXVTIXXLRAQIACYLYGTSPSDNPMXREVHCAVLPPQWGTHQQVHLPKHLPKHPALAHL 636
            K + I  LR QIA YLYG SP DNP  +E+ C V+ PQ G HQQV LP  LP+H  L  L
Sbjct: 2112 KFICIADLRTQIAGYLYGISPPDNPQVKEIRCVVMVPQCGNHQQVQLPSSLPEHQFLDDL 2171

Query: 635  QPLGWMHTQPNELPQLSPQDITTHAKIMSDNSSWDGEKTIIITCSFTPGSCSLTAYKLTP 456
            +PLGW+HTQPNELPQLSPQD+T H +++ +N  WD EK II+TCSFTPGSCSLT+YKLT 
Sbjct: 2172 EPLGWIHTQPNELPQLSPQDVTFHTRVLENNKQWDAEKCIILTCSFTPGSCSLTSYKLTQ 2231

Query: 455  SGYEWGVRNTDRGNNPKGYLPSHYERVQMLLSDRFLGYFMVPSQGSWNYNFMGVRHDPNM 276
            +GYEWG  N D G+NP GYLP+HYE+VQMLLSDRF G++MVP  G WNYNFMG  H  ++
Sbjct: 2232 AGYEWGRLNKDTGSNPHGYLPTHYEKVQMLLSDRFFGFYMVPENGPWNYNFMGANHTVSI 2291

Query: 275  KYGVQLGNPREFYHEVHRPAHFMNFAAMEDAAAPTIAADREDLFA 141
             Y + LG P+E+YH+VHRP HF+ F+ ME+        DR+D FA
Sbjct: 2292 NYSLTLGTPKEYYHQVHRPTHFLQFSKMEEDG----DLDRDDSFA 2332


>At3g03470.1 68416.m00345 cytochrome P450, putative similar to
           cytochrome P450 89A2 GB:Q42602 [Arabidopsis thaliana]
          Length = 511

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 395 PSHYERVQMLLSDRFLGYFMVPSQGSWNYNFMGVRHDPNM 276
           P HY     +  D  LG F++P QG+ N+    +  DP +
Sbjct: 374 PGHYLSYHKVTHDTVLGGFLIPRQGTINFMVGEMGRDPKI 413


>At1g48790.1 68414.m05460 mov34 family protein similar to AMSH [Homo
           sapiens] GI:4098124; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 507

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 638 LQPLGWMHTQPNELPQLSPQDITTH 564
           L PLGW+HT P +   +S  D+ TH
Sbjct: 404 LFPLGWIHTHPTQSCFMSSIDVHTH 428


>At1g10600.1 68414.m01200 mov34 family protein similar to AMSH [Homo
           sapiens] GI:4098124; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 271

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 638 LQPLGWMHTQPNELPQLSPQDITTH 564
           L P+GW+HT P++   +S  D+ TH
Sbjct: 120 LYPVGWIHTHPSQGCFMSSVDLHTH 144


>At3g11030.1 68416.m01331 expressed protein contains Pfam domain
           PF03005: Arabidopsis proteins of unknown function
          Length = 451

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 125 SIFHCVSLYVVIEKKDPRPPNSCSPGDPLVLERPPP 18
           +I H  ++ VV+++  P PP S  P  P     PPP
Sbjct: 50  TIVHQSAIVVVVDEPPPPPPTSPPPPSPPPPSPPPP 85


>At1g64940.1 68414.m07361 cytochrome P450, putative similar to
           cytochrome p450 GI:438242 from [Solanum melongena]
          Length = 511

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = -2

Query: 395 PSHYERVQMLLSDRFLGYFMVPSQGSWNYNFMGVRHDPNMKYGVQLGNPREFYHE 231
           P H+     +  D  LG + VP +G+ N+    +  DP +        P  F  E
Sbjct: 378 PGHFVLPHSVTEDTVLGGYKVPKKGTINFMVAEIGRDPKVWEEPMAFKPERFMEE 432


>At1g64950.1 68414.m07362 cytochrome P450, putative similar to
           cytochrome P450 89A2 (CYPLXXXIX) (SP:Q42602)
           [Arabidopsis thaliana];similar to cytochrome P450
           (GI:438242) [Solanum melongena]
          Length = 510

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 14/55 (25%), Positives = 21/55 (38%)
 Frame = -2

Query: 395 PSHYERVQMLLSDRFLGYFMVPSQGSWNYNFMGVRHDPNMKYGVQLGNPREFYHE 231
           P H+     +  D  LG + VP  G+ N+    +  DP +        P  F  E
Sbjct: 377 PGHFVLPHSVTEDTVLGGYKVPKNGTINFMVAEIGRDPKVWEEPMAFKPERFMEE 431


>At1g15780.1 68414.m01893 expressed protein
          Length = 1335

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = -2

Query: 710 PPQWGTHQQVHLPKHLPKHPALAHLQPLGWMHTQPNELPQLSPQDITTHAKIMSDNSS 537
           P Q  + QQ  +P    + P+  +  PL  +HT     PQLS Q  TT + +    SS
Sbjct: 267 PNQLHSSQQPGVPTSATQ-PSTVNSAPLQGLHTNQQSSPQLSSQQ-TTQSMLRQHQSS 322


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,586,363
Number of Sequences: 28952
Number of extensions: 420806
Number of successful extensions: 1207
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 12,070,560
effective HSP length: 83
effective length of database: 9,667,544
effective search space used: 3335302680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)