Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0092
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containi...    28   4.3  
At4g23080.1 68417.m03327 expressed protein predicted protein, Ar...    28   5.7  
At3g22720.1 68416.m02866 F-box family protein similar to F-box p...    28   5.7  
At5g13390.1 68418.m01542 expressed protein                             27   7.5  
At5g09940.1 68418.m01149 hypothetical protein                          27   10.0 
At4g30690.1 68417.m04350 translation initiation factor 3 (IF-3) ...    27   10.0 
At3g54470.1 68416.m06026 uridine 5'-monophosphate synthase / UMP...    27   10.0 

>At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 588

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = -1

Query: 407 INGSRESVMTY-NLA-SCSHWNCRGLDKTLLLVSNDAT 300
           ++GSRE +++  NL+ S   W   G+D  LLL+ + AT
Sbjct: 299 VSGSREMILSLCNLSRSSDDWQYMGIDCLLLLLKDQAT 336


>At4g23080.1 68417.m03327 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 244

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 142 PINAPSRFSQINIYIFLSHDFIASLWEAYTKTCY 243
           P+  P++FS   ++  + ++FI   W A  + CY
Sbjct: 55  PLVGPTQFSSTRMHFQIGNEFIQVGWTAGGRACY 88


>At3g22720.1 68416.m02866 F-box family protein similar to F-box
           protein family, AtFBX9 (GI:20197985) [Arabidopsis
           thaliana]; contains Pfam PF00646: F-box domain; contains
           TIGRFAM TIGR01640 : F-box protein interaction domain
          Length = 378

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 283 YRRQINIFVMKYVHNTFSCMPPKV 212
           YRR ++IF + Y+ N  SC   K+
Sbjct: 132 YRRYVSIFALGYIQNNESCRSYKI 155


>At5g13390.1 68418.m01542 expressed protein 
          Length = 1123

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 141  SIVTLLILILTASNLIFTSRYIWFY 67
            ++  L +LILTA   I  +RY+W Y
Sbjct: 1042 AVKNLALLILTAPGHIIFNRYVWSY 1066


>At5g09940.1 68418.m01149 hypothetical protein
          Length = 213

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 133 NN*PINAPSRFSQINIYIFLSHDFIASLWEAYTKTCYVRISLQ 261
           NN    +PSRFS  +    +S+  + S  E Y   CY   +LQ
Sbjct: 73  NNFSNESPSRFSSASSIDLVSNSTVYSSPETYDSDCYSLRTLQ 115


>At4g30690.1 68417.m04350 translation initiation factor 3 (IF-3)
           family protein similar to SP|P33319 Translation
           initiation factor IF-3 {Proteus vulgaris}; contains Pfam
           profiles PF00707: Translation initiation factor IF-3,
           C-terminal domain, PF05198: Translation initiation
           factor IF-3, N-terminal domain
          Length = 281

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = +1

Query: 268 LSACGIGTMGMVASFDTSKSVLSRPRQFQ*LQDARL--YVITDSLDPLMVLLGTYLKHRS 441
           +SA    T+ ++        ++S+    +  +DA L   +++   DP +V +  Y K+R 
Sbjct: 88  ISAIRSATVRLIDDQQNMIGLVSKEEAVRRAEDAELDLVILSPDADPPVVRMMDYSKYRY 147

Query: 442 PRPHQTDRLQRRTRRMN 492
            +  +    Q++T RM+
Sbjct: 148 EQQKRKKEQQKKTTRMD 164


>At3g54470.1 68416.m06026 uridine 5'-monophosphate synthase / UMP
           synthase (PYRE-F) (UMPS) identical to SP|Q42586 Uridine
           5'-monophosphate synthase (UMP synthase) [Includes:
           Orotate phosphoribosyltransferase (EC 2.4.2.10)
           (OPRtase); Orotidine 5'- phosphate decarboxylase (EC
           4.1.1.23) (OMPdecase)] {Arabidopsis thaliana}
          Length = 476

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 348 IPMTARCKVIRHYGFSRSINGAF 416
           IPM  R K I+ YG S++I G F
Sbjct: 86  IPMLMRRKEIKDYGTSKAIEGIF 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,619,005
Number of Sequences: 28952
Number of extensions: 258753
Number of successful extensions: 718
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)