Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0090
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11660.1 68417.m01864 heat shock factor protein 7 (HSF7) / he...    30   1.7  
At2g43440.1 68415.m05399 F-box family protein contains Pfam PF00...    29   4.0  
At2g36305.1 68415.m04456 CAAX amino terminal protease family pro...    27   9.2  

>At4g11660.1 68417.m01864 heat shock factor protein 7 (HSF7) / heat
           shock transcription factor 7 (HSTF7) identical to heat
           shock factor protein 7 (HSF7) SP:Q9T0D3 from
           [Arabidopsis thaliana]
          Length = 377

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 651 QREGAAQEGDQRQSVR*ETSERNSDG 574
           +RE AAQEG+Q   V+ E  E N+ G
Sbjct: 341 RREAAAQEGEQSSDVKAEPMEENNSG 366


>At2g43440.1 68415.m05399 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 791

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 563 RRFTPSEFRSL-VSYRTL--WRWSPSWAAPSLWGGTGNLRHFNGHSRL 697
           +R+T S+  S+ +++R +  W W   W  P      GNL  ++ H RL
Sbjct: 658 KRYTWSKAYSISLAHRVVVSWPWQKRWFTPVSVSKQGNLVFYDNHKRL 705



 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +2

Query: 614 WRWSPSWAAPSLWGGTGNLRHFNGHSRL 697
           W W   W  P      GNL  ++ H RL
Sbjct: 294 WPWQKRWFTPVWVSKQGNLLFYDNHKRL 321


>At2g36305.1 68415.m04456 CAAX amino terminal protease family
           protein similar to CAAX prenyl protease 2 (EC 3.4.22.-)
           (Prenyl protein-specific endoprotease 2)
           (Farnesylated-proteins converting enzyme 2) (FACE-2)
           from Mus musculus [SP|P57791], Homo sapiens [SP|Q9Y256],
           Drosophila melanogaster [SP|Q9U1H8]; contains Pfam
           profile PF02517 CAAX amino terminal protease family
           protein
          Length = 242

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 304 F*SLYRNYRNLFLK*NFLIGVGKKFTVTFFGYAS-LFSVTRHL 179
           F  +Y  +   +L+ + ++G+   +TV F  YAS LF  T HL
Sbjct: 133 FREMYIRHNRSYLRASLIVGLQLGYTVIFGAYASFLFIRTGHL 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,038,236
Number of Sequences: 28952
Number of extensions: 239600
Number of successful extensions: 431
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)