Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0088
(676 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g09520.1 68417.m01565 2,3-biphosphoglycerate-independent phos... 31 0.53
At3g22070.1 68416.m02785 proline-rich family protein contains pr... 30 1.2
At3g30841.1 68416.m03967 2,3-biphosphoglycerate-independent phos... 30 1.6
At1g67390.1 68414.m07670 F-box family protein contains Pfam PF00... 30 1.6
At5g05480.1 68418.m00590 expressed protein 29 3.8
At3g48860.2 68416.m05337 expressed protein 28 5.0
At3g48860.1 68416.m05336 expressed protein 28 5.0
At3g63180.1 68416.m07097 expressed protein 27 8.7
At3g62200.1 68416.m06988 expressed protein contains Pfam profile... 27 8.7
At1g26150.1 68414.m03192 protein kinase family protein similar t... 27 8.7
At1g18160.1 68414.m02256 protein kinase family protein contains ... 27 8.7
>At4g09520.1 68417.m01565 2,3-biphosphoglycerate-independent
phosphoglycerate mutase family protein /
phosphoglyceromutase family protein contains similarity
to 2,3-bisphosphoglycerate-independent phosphoglycerate
mutase 1 (EC 5.4.2.1) (Phosphoglyceromutase 1)
(BPG-independent PGAM 1) (aPGAM 1) (aPGAM-Mj1).
(Swiss-Prot:Q59007) [Methanococcus jannaschii]; contains
weak hit to Pfam profile PF01676: Metalloenzyme
superfamily
Length = 492
Score = 31.5 bits (68), Expect = 0.53
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 128 STPISPCPNVFEYETPGSEAGR 193
S P++PCPNVFE G + GR
Sbjct: 299 SAPLNPCPNVFEPAEDGHKPGR 320
>At3g22070.1 68416.m02785 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 178
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +2
Query: 464 NPQPAL--ESPLSSGDSKPNRFVTASTGRPQTQPNLRQQTTPSPIPTSRPLNTDL 622
NP P + SP S DS + ++ + P PN +TP+P P P DL
Sbjct: 75 NPNPPVLGSSPPSPTDSSSSTSISPNPPAPIVNPNPPPPSTPNPPPEFSPPPPDL 129
>At3g30841.1 68416.m03967 2,3-biphosphoglycerate-independent
phosphoglycerate mutase-related /
phosphoglyceromutase-related contains weak similarity to
2,3-bisphosphoglycerate-independent phosphoglycerate
mutase 1 (EC 5.4.2.1) (Phosphoglyceromutase 1)
(BPG-independent PGAM 1) (aPGAM 1) (aPGAM-Mj1).
(Swiss-Prot:Q59007) [Methanococcus jannaschii]
Length = 495
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = +2
Query: 128 STPISPCPNVF----EYETPGSEAGRWYGVVHV 214
S P++PCPNVF + PG G +G +H+
Sbjct: 303 SAPLNPCPNVFVPGEDGHKPGRSDGYDFGFLHI 335
>At1g67390.1 68414.m07670 F-box family protein contains Pfam
PF00646: F-box domain
Length = 479
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +2
Query: 248 NIVLDSKADILGNWIGDVTTQDNMNFKIES-TQTKINPGPATAVRFFVQYNTLNKAPRLL 424
N V+ + + NW D+ NMN+ I S Q K N G V Y K+ +++
Sbjct: 284 NFVIKAPRLLFNNWTKDLEKVPNMNYNITSHAQEKKNIGHEFVVSGDASYLQKLKSLKVV 343
Query: 425 AIRLNGREI 451
N RE+
Sbjct: 344 VDVTNSREV 352
>At5g05480.1 68418.m00590 expressed protein
Length = 608
Score = 28.7 bits (61), Expect = 3.8
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 10/107 (9%)
Frame = -2
Query: 294 PIQFPSISALLSRTILSHREYKVLSVETWTTPYHLPAS--DPGVSY--------SKTFGH 145
P+ ++ S + H ++ +TTPY P+S P SY S +
Sbjct: 55 PLPSDQLTPSCSHVLFRHSFANTINRPPFTTPYTPPSSCISPPWSYVVLDLRAASSGDQY 114
Query: 144 GEIGVLWSCV*TDSAKTSTTVTKPSILICTIRKQLVCYKKIVFRRDL 4
I LW + +TST PS + +RK + Y + R DL
Sbjct: 115 DRISGLWLGG-VELLRTSTAEPSPSGIFWNVRKDVSRYSSLFMRSDL 160
>At3g48860.2 68416.m05337 expressed protein
Length = 577
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 464 NPQPALESPLSSGDSKPNRFVTASTGRPQTQPNLRQQTTPSPIPTSRP 607
+P PAL + + P+ +AS GRP + TTP+PIP P
Sbjct: 128 SPSPALGRNFA--EQVPSSVRSASAGRPSMSA---RSTTPTPIPNLMP 170
>At3g48860.1 68416.m05336 expressed protein
Length = 494
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 464 NPQPALESPLSSGDSKPNRFVTASTGRPQTQPNLRQQTTPSPIPTSRP 607
+P PAL + + P+ +AS GRP + TTP+PIP P
Sbjct: 128 SPSPALGRNFA--EQVPSSVRSASAGRPSMSA---RSTTPTPIPNLMP 170
>At3g63180.1 68416.m07097 expressed protein
Length = 978
Score = 27.5 bits (58), Expect = 8.7
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Frame = +2
Query: 335 STQTKINPGPATAVRFFVQYNTLNKAPRLLAIRLNGR---EICNANNPQPALESPLSSGD 505
S+Q K NP ++++ N L + IR +G+ NPQP+ SG
Sbjct: 849 SSQWK-NPATSSSLTSCTSLN-LKQFQSQQQIRTHGQTQISFAAPTNPQPSQGKQGRSGG 906
Query: 506 SKPNRFVTASTGRP-QTQPNLRQQTTPSPIPTSR 604
S P+ +AS G+P ++ + + SP+P S+
Sbjct: 907 SSPSVTGSASHGKPANSKVSNSKALLLSPVPLSQ 940
>At3g62200.1 68416.m06988 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537
Length = 673
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +2
Query: 467 PQPALESPLSSGDSKPNRFVTASTGRPQTQPNLRQQTTP 583
P P L +PL + +++ + + RP P +RQ+ P
Sbjct: 382 PSPPLLTPLDISNLSVSQYPSQTQNRPNFNPQVRQEFRP 420
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Frame = +2
Query: 437 NGREICNANNP---QPALESPLSSGDSKPNRFVTASTGRPQTQPNLR---QQTTPSPIPT 598
NG N P P E+PLSS +P+ + TG P T + + + P P+PT
Sbjct: 47 NGNPPETTNTPAQSSPPPETPLSSPPPEPSPPSPSLTGPPPTTIPVSPPPEPSPPPPLPT 106
Query: 599 SRP 607
P
Sbjct: 107 EAP 109
>At1g18160.1 68414.m02256 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 992
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 479 LESPLSSGDSKPNRFVTASTGRPQTQPNLRQQTTPSPIPTSRPLNTDLR 625
++S S D K F T GR Q+ + P P P S+ + DLR
Sbjct: 528 IKSVAESNDEKGKDFGTIQQGRNQSNLGPVRFLPPLPRPQSKAITHDLR 576
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,184,170
Number of Sequences: 28952
Number of extensions: 338941
Number of successful extensions: 1128
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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