Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0081
         (767 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14850.1 68415.m01687 expressed protein                             31   1.1  
At3g58050.1 68416.m06471 expressed protein                             28   6.0  
At4g33890.2 68417.m04809 expressed protein                             28   7.9  
At4g33890.1 68417.m04808 expressed protein                             28   7.9  
At3g14000.2 68416.m01768 expressed protein                             28   7.9  
At3g14000.1 68416.m01767 expressed protein                             28   7.9  

>At2g14850.1 68415.m01687 expressed protein
          Length = 291

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +3

Query: 120 RSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKLPVAVLKVGESRHV 269
           RS K   R + LGP  KP  L     E+MS  +A +LP+ V+ V +   V
Sbjct: 104 RSRKFRDRPSPLGPLGKPQSLTTTNDESMS--KAQRLPMEVVSVEDGEEV 151


>At3g58050.1 68416.m06471 expressed protein
          Length = 1209

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 60  TPSSSHQSETWDPEAKAEYPRSN 128
           T  S H  + W+P    +YPRSN
Sbjct: 834 TRDSLHSKQVWEPMEPKKYPRSN 856


>At4g33890.2 68417.m04809 expressed protein
          Length = 342

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
 Frame = +3

Query: 120 RSNKLVIRQALLGPDAKPDELNVIQVEAMS-LQEAVKL-------PVAVLKVGESRHV 269
           RS KL  R + LGP  KP  L     E+MS  Q A +L       PV V+ V E   V
Sbjct: 121 RSRKLRDRPSPLGPLGKPHSLTTTNEESMSKAQSATELLSLGSRPPVEVVSVEEGEEV 178


>At4g33890.1 68417.m04808 expressed protein
          Length = 342

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
 Frame = +3

Query: 120 RSNKLVIRQALLGPDAKPDELNVIQVEAMS-LQEAVKL-------PVAVLKVGESRHV 269
           RS KL  R + LGP  KP  L     E+MS  Q A +L       PV V+ V E   V
Sbjct: 121 RSRKLRDRPSPLGPLGKPHSLTTTNEESMSKAQSATELLSLGSRPPVEVVSVEEGEEV 178


>At3g14000.2 68416.m01768 expressed protein
          Length = 374

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 637 VAPSPAQFRYNYT*NGDGTTSPKWVSRRFVHFLAFFLGDAALP 509
           VA +  +FRY Y   G G+++PK + +     L  FL     P
Sbjct: 81  VASNSGRFRYAYKRAGSGSSTPKILGKEMESRLKGFLSGEGTP 123


>At3g14000.1 68416.m01767 expressed protein
          Length = 374

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 637 VAPSPAQFRYNYT*NGDGTTSPKWVSRRFVHFLAFFLGDAALP 509
           VA +  +FRY Y   G G+++PK + +     L  FL     P
Sbjct: 81  VASNSGRFRYAYKRAGSGSSTPKILGKEMESRLKGFLSGEGTP 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,509,089
Number of Sequences: 28952
Number of extensions: 296780
Number of successful extensions: 708
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)