Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0080
         (494 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63410.1 68418.m07960 leucine-rich repeat transmembrane prote...    30   0.74 
At4g18200.1 68417.m02705 purine permease family protein similar ...    28   3.0  
At5g07820.1 68418.m00896 expressed protein                             28   4.0  
At5g07180.1 68418.m00818 leucine-rich repeat family protein / pr...    27   5.3  
At3g48970.1 68416.m05349 copper-binding family protein similar t...    27   6.9  
At2g35380.1 68415.m04337 peroxidase 20 (PER20) (P20) identical t...    27   9.2  
At1g27690.1 68414.m03384 expressed protein contains Pfam profile...    27   9.2  

>At5g63410.1 68418.m07960 leucine-rich repeat transmembrane protein
           kinase, putative contains similarity to receptor-like
           protein kinase
          Length = 680

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 213 LHLLNQRWSIYQI-ASKIQVLRMGLLLKLRKHTQHLMCWQDW 335
           + LL+  WS Y + +S++Q  +  +LL+L+KH ++    + W
Sbjct: 7   IFLLSLLWSFYSLGSSQLQASQAQVLLQLKKHLEYPQQLESW 48


>At4g18200.1 68417.m02705 purine permease family protein similar to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 1128

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 278 GVVIEAEKTYTASYVLAGLGFLPVATIIIF 367
           G++ E+   ++ S    GL  +PVA +I+F
Sbjct: 676 GLIFESSSVFSNSITAVGLPIVPVAAVIVF 705



 Score = 26.6 bits (56), Expect = 9.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 278 GVVIEAEKTYTASYVLAGLGFLPVATIIIF 367
           G++ E+   ++ S    GL  +PV  +I+F
Sbjct: 315 GLIFESSSVFSNSITAVGLPIVPVVAVIVF 344



 Score = 26.6 bits (56), Expect = 9.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 278  GVVIEAEKTYTASYVLAGLGFLPVATIIIF 367
            G++ E+   ++ S    GL  +PV  +I+F
Sbjct: 1051 GLIFESSSVFSNSITAVGLPIVPVVAVIVF 1080


>At5g07820.1 68418.m00896 expressed protein
          Length = 561

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = +1

Query: 37  LYDFLSTNHYYSKRYRYSTFDRTTGN---HTKYRINNIQTLH 153
           L+    TNH   KRY     D+ TG     T+YR N   + H
Sbjct: 42  LHPAAETNHASLKRYSTRVLDKKTGKAQVQTRYRGNQTSSTH 83


>At5g07180.1 68418.m00818 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 932

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 221 VESKVVNLSNSIENSSSQNGVV--IEAEKTYTASYVLAGLGFL 343
           ++S  + L  + E   S  G+   I A KTY ++YVL  +G++
Sbjct: 742 IKSSNILLDGNFEARLSDFGIAKSIPATKTYASTYVLGTIGYI 784


>At3g48970.1 68416.m05349 copper-binding family protein similar to
           copper homeostasis factor gi:3168840 from Arabidopsis
           thaliana; contains Pfam heavy-metal-associated domain
           PF00403
          Length = 140

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 19  HNHYYNLYDFLS--TNHYYSKRYRYSTFDRTTGNHT 120
           ++H+ + Y + S  TNHYYS  +R    D T G HT
Sbjct: 75  NSHFASFYKYPSYVTNHYYSDAHR---TDPTGGVHT 107


>At2g35380.1 68415.m04337 peroxidase 20 (PER20) (P20) identical to
           SP|Q9SLH7 Peroxidase 20 precursor (EC 1.11.1.7) (Atperox
           P20) (ATP28a) {Arabidopsis thaliana}
          Length = 336

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 64  YYSKRYRYSTFDRTTGNHTKYRINNIQTLHSNFNEVL*IEFKTPISFEKHY 216
           Y  +  R+STF R  G+  K          S  NE+  ++ KTP  F+ HY
Sbjct: 221 YVDEFRRHSTFRRVLGSQCKDS--------SRDNELSPLDIKTPAYFDNHY 263


>At1g27690.1 68414.m03384 expressed protein contains Pfam profile
           PF04788: Protein of unknown function (DUF620)
          Length = 433

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 186 ELDSEDFIEVTVKGLNVVDSIFCVVPGSSVECAIPVS 76
           ++ S    + T++   V+D I   VPG S++C IP S
Sbjct: 371 DMSSGHNTKTTMQEAWVIDEISFNVPGLSIDCFIPPS 407


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,635,086
Number of Sequences: 28952
Number of extensions: 181057
Number of successful extensions: 535
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)