Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0076
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71860.1 68414.m08305 protein tyrosine phosphatase 1 (PTP1) i...    42   3e-04
At3g07650.2 68416.m00917 zinc finger (B-box type) family protein...    29   2.0  
At3g07650.1 68416.m00916 zinc finger (B-box type) family protein...    29   2.0  
At5g48250.1 68418.m05961 zinc finger (B-box type) family protein...    29   3.5  
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c...    27   8.1  
At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3) ...    27   8.1  

>At1g71860.1 68414.m08305 protein tyrosine phosphatase 1 (PTP1)
           identical to protein tyrosine phosphatase 1 GI:3170531
           from [Arabidopsis thaliana]; contains Pfam profile:
           PF00102 protein-tyrosine phosphatase
          Length = 340

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
 Frame = +2

Query: 62  GPVCVVSPDGRSRAGVYCAANACIEQVIKHGEVDVFQAVKTV---RRHRPQLVENMTEYK 232
           GP+ V    G  R G YCA +  I++++  G++      KTV   R+ R  +V+ M +Y 
Sbjct: 259 GPIIVHCSAGIGRTGTYCAIHNTIQRILA-GDMSALDLAKTVALFRKQRIGMVQTMDQYF 317

Query: 233 YCYD 244
           +CY+
Sbjct: 318 FCYN 321


>At3g07650.2 68416.m00917 zinc finger (B-box type) family protein
           similar to zinc finger protein GB:BAA33206 [Oryza
           sativa]
          Length = 372

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 127 VHRTSHKARRGGRVSSCEDCSTTPATARREHDRIQV 234
           VH  +  ++R  R   CE C+  PAT R   +R+ +
Sbjct: 32  VHSANALSKRHSRTLVCERCNAQPATVRCVEERVSL 67


>At3g07650.1 68416.m00916 zinc finger (B-box type) family protein
           similar to zinc finger protein GB:BAA33206 [Oryza
           sativa]
          Length = 372

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 127 VHRTSHKARRGGRVSSCEDCSTTPATARREHDRIQV 234
           VH  +  ++R  R   CE C+  PAT R   +R+ +
Sbjct: 32  VHSANALSKRHSRTLVCERCNAQPATVRCVEERVSL 67


>At5g48250.1 68418.m05961 zinc finger (B-box type) family protein
           contains similarity to CONSTANS homologs
          Length = 373

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 121 QRVHRTSHKARRGGRVSSCEDCSTTPATARREHDRIQV 234
           + VH  +  ++R  R   CE C+  PA+ R   +R+ +
Sbjct: 30  RNVHSANALSKRHSRTLVCERCNAQPASVRCSDERVSL 67


>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
           contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
           domain and PF00098: Zinc knuckle
          Length = 299

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 91  TQPGRGLLRSQRVHRTSHKARRGGRVSSCEDC 186
           T PG G L+ +   R  + ARRGG  S C +C
Sbjct: 75  TAPGGGSLKKENNSR-GNGARRGGGGSGCYNC 105


>At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3)
           identical to WIP3 protein [Arabidopsis thaliana]
           gi|18027014|gb|AAL55723; contains Pfam domain, PF00096:
           Zinc finger, C2H2 type
          Length = 337

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
 Frame = +1

Query: 4   QFTSGADEHGGTLATADRLRTSLRCI-----TGWTQPGRGLLRSQRVHRTSHKARRGGRV 168
           +F  GAD   GT+  A  LR    C           P    L+  R  +T +K + G + 
Sbjct: 205 EFRKGADSLKGTIQPAAILRLPCYCCAEGCKNNINHPRSKPLKDFRTLQTHYKRKHGSKP 264

Query: 169 SSCEDC 186
            SC  C
Sbjct: 265 FSCGKC 270


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,201,850
Number of Sequences: 28952
Number of extensions: 170518
Number of successful extensions: 593
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)