Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0060
         (779 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01730.1 68415.m00101 metallo-beta-lactamase family protein s...    29   3.5  
At4g14990.1 68417.m02303 expressed protein                             29   4.6  

>At2g01730.1 68415.m00101 metallo-beta-lactamase family protein
           simliar to SP|P79101 Cleavage and polyadenylation
           specificity factor, 73 kDa subunit (CPSF 73 kDa subunit)
           {Bos taurus}; contains Pfam profile PF00753:
           Metallo-beta-lactamase superfamily
          Length = 613

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +1

Query: 403 SRRRPIRAVLHVSGDGLRVVEEETKGLIVDQTIEKVSFCAPDRNHERGFSYIC 561
           S    +R   H + DG+ V+E+  K  IV Q  +++S    ++NH    ++ C
Sbjct: 472 SNSTQLRVTDHRTADGVLVIEKSKKAKIVHQ--DEISEVLHEKNHVVSLAHCC 522


>At4g14990.1 68417.m02303 expressed protein
          Length = 787

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 337 CVEVFESRGMQVCEEALKVLRNSRRRPIRAVLHVSGDGLRVV 462
           CV+  + R +  C  A  V+ +S + P+R +   SGDG  VV
Sbjct: 623 CVQAMDLRALSACLAA--VVCSSEQPPLRPIGSSSGDGASVV 662


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,041,031
Number of Sequences: 28952
Number of extensions: 279274
Number of successful extensions: 861
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)