Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0044
(718 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57680.1 68416.m06426 peptidase S41 family protein similar to... 34 0.11
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 30 1.3
At5g05240.1 68418.m00560 expressed protein similar to unknown pr... 29 3.1
At4g16144.1 68417.m02448 expressed protein 28 5.4
At3g44090.1 68416.m04723 F-box family protein contains F-box dom... 28 7.1
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex... 28 7.1
At5g26780.3 68418.m03195 glycine hydroxymethyltransferase, putat... 27 9.4
At5g26780.2 68418.m03194 glycine hydroxymethyltransferase, putat... 27 9.4
At5g26780.1 68418.m03193 glycine hydroxymethyltransferase, putat... 27 9.4
At5g24800.1 68418.m02928 bZIP transcription factor family protei... 27 9.4
At3g25560.2 68416.m03179 protein kinase family protein contains ... 27 9.4
At3g25560.1 68416.m03178 protein kinase family protein contains ... 27 9.4
>At3g57680.1 68416.m06426 peptidase S41 family protein similar to
PSII D1 protein processing enzyme (GI::7268527)
[Arabidopsis thaliana]; similar to SP|Q55669
Carboxyl-terminal processing protease precursor
(Photosystem II D1 protein processing peptidase) (EC
3.4.21.102) [strain PCC 6803] {Synechocystis sp.};
contains Pfam profile PF03572: Peptidase family S41B
Length = 516
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +1
Query: 358 LKRYPLTTLNLPHIDHLAPLYKVDFVKLKIKIHTNLDDMSYSLEEAENMDLRENIANL 531
+K P+++ +PH L K +VKL T DM ++ E EN D++ I +L
Sbjct: 286 IKLSPISSAIIPHTTPDGRLAKTGYVKLTAFSQTAASDMENAVHEMENQDVQSYILDL 343
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 427 DFVKLK-IKIHTNLDDMSYSLEEAENMDLRENIANLITVMC 546
DFVKLK + I NLDD + AEN D + ++ + ++C
Sbjct: 1830 DFVKLKLVSISINLDDGISNSGSAENFDAQTSLDSSDDIVC 1870
>At5g05240.1 68418.m00560 expressed protein similar to unknown
protein (gb AAD32815.2)
Length = 530
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +3
Query: 177 IVKMNNGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKVD 299
++ ++G I APK RGR ++NN A ++ K + + +VD
Sbjct: 186 LISSSHGGIPAPKKRGRKTKINNDAAVAKKRK-IERKEEVD 225
>At4g16144.1 68417.m02448 expressed protein
Length = 390
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +3
Query: 234 QMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYRPSRP 413
+ N +L R + S + D S+DA EW PA+ S + P N +P P S+P
Sbjct: 95 EFNQLVDKLNRVEDESRQDGSDLPVVSYSSDAVEWPPAHKASYSRPDIN-KPLP--TSQP 151
Query: 414 S 416
S
Sbjct: 152 S 152
>At3g44090.1 68416.m04723 F-box family protein contains F-box domain
Pfam:PF00646
Length = 449
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 322 QMLKNGTLQITLLKRYPLTTLNLPHIDHLAPLYKVDFVKL-KIKIHTNLDDM 474
Q+ + +++ +K+Y + L HI HL L K++ ++L K+ + T +DD+
Sbjct: 361 QIPSSNKIKMLSIKQYQGSATELKHISHL--LLKMECLELVKVYLATEMDDL 410
>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
extensin family protein (LRX1) similar to extensin-like
protein [Lycopersicon esculentum]
gi|5917664|gb|AAD55979; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 744
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +3
Query: 231 WQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYP----ANYTSQALPAYNTEPAPY 398
++M+ + R L P V P S SK+S + + P ++ S ++ AY+ P PY
Sbjct: 388 FKMSPEVRTLPPPIYVYSSPPPPPS-SKMSPTVRAYSPPPPPSSKMSPSVRAYSPPPPPY 446
Query: 399 RPSRPSVQ 422
PSV+
Sbjct: 447 SKMSPSVR 454
>At5g26780.3 68418.m03195 glycine hydroxymethyltransferase, putative
/ serine hydroxymethyltransferase, putative /
serine/threonine aldolase, putative strong similarity to
SP|P50433 Serine hydroxymethyltransferase, mitochondrial
precursor (EC 2.1.2.1) (Serine methylase) (Glycine
hydroxymethyltransferase) (SHMT) {Solanum tuberosum};
contains Pfam profile PF00464: serine
hydroxymethyltransferase
Length = 533
Score = 27.5 bits (58), Expect = 9.4
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +1
Query: 268 LRQFQTN-QRWILLNRSYQQMLKNGTLQITLLKRYP-LTTLNLPHIDHLAPLYKVDFVKL 441
L FQ + +W + +S N + LLK + + L+LPH HL+ Y+ D K+
Sbjct: 130 LEAFQLDPSKWGVNVQSLSGSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKI 189
Query: 442 KIKIHTNLDDMSYSLEE 492
+ + M Y L+E
Sbjct: 190 S-AVSIFFETMPYRLDE 205
>At5g26780.2 68418.m03194 glycine hydroxymethyltransferase, putative
/ serine hydroxymethyltransferase, putative /
serine/threonine aldolase, putative strong similarity to
SP|P50433 Serine hydroxymethyltransferase, mitochondrial
precursor (EC 2.1.2.1) (Serine methylase) (Glycine
hydroxymethyltransferase) (SHMT) {Solanum tuberosum};
contains Pfam profile PF00464: serine
hydroxymethyltransferase
Length = 533
Score = 27.5 bits (58), Expect = 9.4
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +1
Query: 268 LRQFQTN-QRWILLNRSYQQMLKNGTLQITLLKRYP-LTTLNLPHIDHLAPLYKVDFVKL 441
L FQ + +W + +S N + LLK + + L+LPH HL+ Y+ D K+
Sbjct: 130 LEAFQLDPSKWGVNVQSLSGSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKI 189
Query: 442 KIKIHTNLDDMSYSLEE 492
+ + M Y L+E
Sbjct: 190 S-AVSIFFETMPYRLDE 205
>At5g26780.1 68418.m03193 glycine hydroxymethyltransferase, putative
/ serine hydroxymethyltransferase, putative /
serine/threonine aldolase, putative strong similarity to
SP|P50433 Serine hydroxymethyltransferase, mitochondrial
precursor (EC 2.1.2.1) (Serine methylase) (Glycine
hydroxymethyltransferase) (SHMT) {Solanum tuberosum};
contains Pfam profile PF00464: serine
hydroxymethyltransferase
Length = 517
Score = 27.5 bits (58), Expect = 9.4
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +1
Query: 268 LRQFQTN-QRWILLNRSYQQMLKNGTLQITLLKRYP-LTTLNLPHIDHLAPLYKVDFVKL 441
L FQ + +W + +S N + LLK + + L+LPH HL+ Y+ D K+
Sbjct: 130 LEAFQLDPSKWGVNVQSLSGSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKI 189
Query: 442 KIKIHTNLDDMSYSLEE 492
+ + M Y L+E
Sbjct: 190 S-AVSIFFETMPYRLDE 205
>At5g24800.1 68418.m02928 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H2
GI:10954096
Length = 277
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 526 LLCSPVDPCFQLLQVNKTC 470
L SP+DPCF L+ + TC
Sbjct: 24 LTTSPLDPCFDLMNRDYTC 42
>At3g25560.2 68416.m03179 protein kinase family protein contains
Prosite:PS00108: Serine/Threonine protein kinases
active-site signature and PS00107: Protein kinases
ATP-binding region signature
Length = 636
Score = 27.5 bits (58), Expect = 9.4
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Frame = +1
Query: 343 LQITLLKRYPLTTLNLPHIDHLAPLYKVDFVKLKIKIHTNLDD--MSYS-----LEEAEN 501
LQ LL+ +T N+PH + L K+ + L T +SYS N
Sbjct: 107 LQTVLLQNNYITG-NIPH--EIGKLMKLKTLDLSTNNFTGQIPFTLSYSKNLQYFRRVNN 163
Query: 502 MDLRENIANLITVMCEITFDPGKFDTLCGPLVDSFASTLN 621
L I + + M ++TF ++ L GP+ S A T N
Sbjct: 164 NSLTGTIPSSLANMTQLTFLDLSYNNLSGPVPRSLAKTFN 203
>At3g25560.1 68416.m03178 protein kinase family protein contains
Prosite:PS00108: Serine/Threonine protein kinases
active-site signature and PS00107: Protein kinases
ATP-binding region signature
Length = 635
Score = 27.5 bits (58), Expect = 9.4
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Frame = +1
Query: 343 LQITLLKRYPLTTLNLPHIDHLAPLYKVDFVKLKIKIHTNLDD--MSYSLE----EAENM 504
LQ LL+ +T N+PH + L K+ + L T +SYS N
Sbjct: 107 LQTVLLQNNYITG-NIPH--EIGKLMKLKTLDLSTNNFTGQIPFTLSYSKNLQYLRVNNN 163
Query: 505 DLRENIANLITVMCEITFDPGKFDTLCGPLVDSFASTLN 621
L I + + M ++TF ++ L GP+ S A T N
Sbjct: 164 SLTGTIPSSLANMTQLTFLDLSYNNLSGPVPRSLAKTFN 202
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,953,468
Number of Sequences: 28952
Number of extensions: 347967
Number of successful extensions: 964
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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