Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0041
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62030.1 68414.m06996 DC1 domain-containing protein contains ...    30   1.8  
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s...    29   4.1  
At5g17970.1 68418.m02108 disease resistance protein (TIR-NBS-LRR...    28   7.2  
At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26) ...    27   9.5  

>At1g62030.1 68414.m06996 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 743

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 211 CYQCNFISYDQKETLCPRGHHKLANCECHSQLTSPFDGCRGLTEHNALGC 62
           C QC++I +++   L  + HH +     H  + +   G RGL EH+   C
Sbjct: 457 CMQCDYILHEKCANLSRKMHHPI-----HPHMLTLKVGSRGLVEHSVDPC 501


>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
           similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
           [Drosophila melanogaster]
          Length = 926

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 253 FHISSK*TLKLYS*CYQCNFISYDQKET 170
           F +SS+ T+K+    YQ  FISY + ET
Sbjct: 320 FRLSSEHTMKVAEELYQAGFISYPRTET 347


>At5g17970.1 68418.m02108 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 780

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 13  LSTLANKNKLYINRSGYILMHCV 81
           L  L +++ ++I+  GYI+MHC+
Sbjct: 474 LKVLVDRSLIHIDADGYIVMHCL 496


>At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26)
           similar to GI:11993492; RNA binding protein - Homo
           sapiens, EMBL:AB016089 (N-terminus), several ubiquitin
           carboxyl-terminal hydrolases from aa pos. 712
          Length = 1067

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +1

Query: 196 NCIDNITNTVLVFILRIYERTQL---TKAKTIYKDLYTNSEFWMKVLVTCSR 342
           N +   T+  L  +L + ER  L    KAKTI +DL++ S   +  + TCS+
Sbjct: 179 NGVQQDTHEFLTLLLSLLERCLLHSGVKAKTIVQDLFSGS---VSHVTTCSK 227


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,928,510
Number of Sequences: 28952
Number of extensions: 330830
Number of successful extensions: 746
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)