Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0016
(985 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 33 0.29
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 33 0.29
At4g33230.1 68417.m04730 pectinesterase family protein contains ... 33 0.38
At5g43870.1 68418.m05363 expressed protein 32 0.67
At4g00800.1 68417.m00110 expressed protein contains 1 WD-40 repe... 32 0.67
At1g10720.1 68414.m01221 BSD domain-containing protein contains ... 32 0.67
At1g12210.1 68414.m01413 disease resistance protein (CC-NBS-LRR ... 30 2.7
At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99... 29 4.7
At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99... 29 4.7
At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99... 29 4.7
At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99... 29 4.7
At3g60380.1 68416.m06753 expressed protein 29 4.7
At5g20680.1 68418.m02456 expressed protein predicted proteins, A... 29 6.3
At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr... 28 8.3
At2g30960.1 68415.m03776 expressed protein 28 8.3
At1g09770.1 68414.m01096 myb family transcription factor contain... 28 8.3
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 33.1 bits (72), Expect = 0.29
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Frame = +2
Query: 599 SYLSAETPSDSLDS---NAE-ALQASATEDIL--TTLPTEPVVQTPPLQEPAINETTRRT 760
S L+ PS SL + N E ++ + E ++ T TEP VQ PP EP + E T
Sbjct: 3035 SQLADTEPSSSLTAVQKNIEDQVETAGCEFVVVSTGCSTEPQVQLPPSAEPVVAEGT-EF 3093
Query: 761 PKDDLSNDIET---LLVEIRDVQTRLTDLPDESLEATEEVSRRESNFNQV 901
P L ++ L+ + + +T L D+ S T E + + +QV
Sbjct: 3094 PSSLLMTGVDNSSHLMTGVDNAKTHLADVVPSSSPTTMEKNIEAQDQDQV 3143
Score = 31.9 bits (69), Expect = 0.67
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 596 SSYLSAETPSDSLDSNAEALQASATEDILTTLPTEPVVQTPPLQEPAINETT 751
SS + E ++ D + D+LT +EP +Q PP EP I+E T
Sbjct: 3126 SSPTTMEKNIEAQDQDQVTTGGCGLVDVLTECSSEPQLQLPPSAEPVISEGT 3177
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 33.1 bits (72), Expect = 0.29
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Frame = +2
Query: 599 SYLSAETPSDSLDS---NAE-ALQASATEDIL--TTLPTEPVVQTPPLQEPAINETTRRT 760
S L+ PS SL + N E ++ + E ++ T TEP VQ PP EP + E T
Sbjct: 3035 SQLADTEPSSSLTAVQKNIEDQVETAGCEFVVVSTGCSTEPQVQLPPSAEPVVAEGT-EF 3093
Query: 761 PKDDLSNDIET---LLVEIRDVQTRLTDLPDESLEATEEVSRRESNFNQV 901
P L ++ L+ + + +T L D+ S T E + + +QV
Sbjct: 3094 PSSLLMTGVDNSSHLMTGVDNAKTHLADVVPSSSPTTMEKNIEAQDQDQV 3143
Score = 31.9 bits (69), Expect = 0.67
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 596 SSYLSAETPSDSLDSNAEALQASATEDILTTLPTEPVVQTPPLQEPAINETT 751
SS + E ++ D + D+LT +EP +Q PP EP I+E T
Sbjct: 3126 SSPTTMEKNIEAQDQDQVTTGGCGLVDVLTECSSEPQLQLPPSAEPVISEGT 3177
>At4g33230.1 68417.m04730 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 609
Score = 32.7 bits (71), Expect = 0.38
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +2
Query: 587 KDHSSYLSAETPSDSLDSNA-EALQASATEDILTTLPTEPVVQTPPLQEPAINETTRRTP 763
K S +E+PS S+A + ++A + I+ TL + + P Q NET + TP
Sbjct: 63 KSKDSPTKSESPSPKPPSSAAQTVKAGQVDKIIQTLCNSTLYK-PTCQNTLKNETKKDTP 121
Query: 764 KDDLSNDIETLLVEIRD 814
+ D + +++ +V + D
Sbjct: 122 QTDPRSLLKSAIVAVND 138
>At5g43870.1 68418.m05363 expressed protein
Length = 453
Score = 31.9 bits (69), Expect = 0.67
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 584 WKDHSSYLSAETPSDSLDSNAEALQASATEDILTTLPTEPVVQTPPLQ 727
W+ + ++ ETP DS++ + ASATE + + P Q P ++
Sbjct: 13 WRSNPTFKPPETPLDSMEFLSRTWSASATEVSRAVVASPPTSQPPQMR 60
>At4g00800.1 68417.m00110 expressed protein contains 1 WD-40 repeat
(PF00400); 42% similarity to fimbriae-associated protein
Fap1 (gi:3929312) [Streptococcus parasanguinis]
Length = 994
Score = 31.9 bits (69), Expect = 0.67
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = +2
Query: 590 DHSSYLSAETPSDSLDSNAEALQASATEDILTTLPTEPVVQTPPLQEPAINETTRRTPKD 769
D S+L +++ SDS D ++ ++ ++IL + +PP P+IN + P
Sbjct: 4 DLDSFLVSDSDSDS-DLDSSSVPHRTVDEILNASSSSSASSSPPSSPPSINRRKQDDPNR 62
Query: 770 DLSNDIETLLV 802
LS + + V
Sbjct: 63 RLSEALTNVAV 73
>At1g10720.1 68414.m01221 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 429
Score = 31.9 bits (69), Expect = 0.67
Identities = 21/56 (37%), Positives = 27/56 (48%)
Frame = +2
Query: 743 ETTRRTPKDDLSNDIETLLVEIRDVQTRLTDLPDESLEATEEVSRRESNFNQVRRS 910
E R KDDL+ TL + R V L LPD S ++ ++S FNQ R S
Sbjct: 53 EAQARGVKDDLTELGHTLTRQFRGVANFLAPLPDGSSSSSSDLS-NHPRFNQSRSS 107
>At1g12210.1 68414.m01413 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 885
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 248 VKQNQPKEKPIDLNLKTDVKVDIENIRNDNKFWVEKHLYHDAECQY 385
+ N PK + + L+ K+ VKV+ I+ K W+E+ + D QY
Sbjct: 831 ILNNCPKLRKLPLDSKSVVKVEEFVIKYKEKKWIERVEWEDEATQY 876
>At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 643 RGGSSSFRY*GYTNNPTYRTSCPNPTPTGASHQRDNP 753
RGGSSS+ + P+++ S P P PT H R +P
Sbjct: 376 RGGSSSYNSPKPSRLPSFKPSVP-PHPTEGYHVRSSP 411
>At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 643 RGGSSSFRY*GYTNNPTYRTSCPNPTPTGASHQRDNP 753
RGGSSS+ + P+++ S P P PT H R +P
Sbjct: 376 RGGSSSYNSPKPSRLPSFKPSVP-PHPTEGYHVRSSP 411
>At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 643 RGGSSSFRY*GYTNNPTYRTSCPNPTPTGASHQRDNP 753
RGGSSS+ + P+++ S P P PT H R +P
Sbjct: 376 RGGSSSYNSPKPSRLPSFKPSVP-PHPTEGYHVRSSP 411
>At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 643 RGGSSSFRY*GYTNNPTYRTSCPNPTPTGASHQRDNP 753
RGGSSS+ + P+++ S P P PT H R +P
Sbjct: 376 RGGSSSYNSPKPSRLPSFKPSVP-PHPTEGYHVRSSP 411
>At3g60380.1 68416.m06753 expressed protein
Length = 743
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Frame = +2
Query: 608 SAETPSDSLDSNAEAL-----QASATEDILTTLPTEPVVQ-TPPLQEPAINETTRRTPK 766
S ++SL+SN E L + S++ +LP P + +PP E N+T RR+P+
Sbjct: 311 SRSVSAESLNSNVEELVKEKSRQSSSRSSSPSLPPSPSLSPSPPSPELVPNDTRRRSPE 369
>At5g20680.1 68418.m02456 expressed protein predicted proteins,
Arabidopsis thaliana
Length = 551
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 53 EREETIEPELSDTLSDAVPINVVDPITNNHINLKPDNFWINKY 181
E T+ S TL D P+N+ DP T + ++L ++ +Y
Sbjct: 337 ETNTTVLYHWSSTLCDIEPLNITDPATEHAMHLDRPPAFLRQY 379
>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 284
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/79 (24%), Positives = 35/79 (44%)
Frame = +2
Query: 632 LDSNAEALQASATEDILTTLPTEPVVQTPPLQEPAINETTRRTPKDDLSNDIETLLVEIR 811
+D +A Q + E + E V+ + +P + + T D ++ L E+
Sbjct: 1 MDVSARKSQKAGREKLRREKLNEHFVELGNVLDPERPKNDKATILTDTVQLLKELTSEVN 60
Query: 812 DVQTRLTDLPDESLEATEE 868
+++ T L DES E T+E
Sbjct: 61 KLKSEYTALTDESRELTQE 79
>At2g30960.1 68415.m03776 expressed protein
Length = 260
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 665 RKLEEPPRLNQANQKEFRRSSKSYD 591
+K EE R+N++N+K F R +S D
Sbjct: 65 KKAEEEKRMNRSNRKHFGRKKESID 89
>At1g09770.1 68414.m01096 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 844
Score = 28.3 bits (60), Expect = 8.3
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Frame = +2
Query: 617 TPSDSLDSNAEALQASATEDILTTLPTEPVVQTPPLQEPAINETTRRTPKDDLSNDIETL 796
TPS L+ + L A+ T+D +P P +P R D+ D + +
Sbjct: 91 TPSQCLERYEKLLDAACTKDENYDAADDPRKLRPGEIDPNPEAKPARPDPVDMDEDEKEM 150
Query: 797 LVEIRD--VQTRLTDLPDESLEATEEVSRRESNFNQVRRSSRAVGAE 931
L E R TR ++ E E +RR ++ Q RR +A G +
Sbjct: 151 LSEARARLANTRGKKAKRKAREKQLEEARRLASL-QKRRELKAAGID 196
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,332,689
Number of Sequences: 28952
Number of extensions: 352197
Number of successful extensions: 1322
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1319
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2392460208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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