Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0128
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79700.1 68414.m09295 ovule development protein, putative sim...    31   0.65 
At1g76780.1 68414.m08935 expressed protein ; expression supporte...    29   2.6  
At5g47500.1 68418.m05865 pectinesterase family protein contains ...    29   3.5  
At4g19420.1 68417.m02857 pectinacetylesterase family protein con...    28   4.6  
At1g73430.1 68414.m08500 sec34-like family protein contains Pfam...    28   4.6  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    28   4.6  
At1g33170.1 68414.m04096 dehydration-responsive family protein s...    27   8.0  

>At1g79700.1 68414.m09295 ovule development protein, putative
           similar to ovule development protein AINTEGUMENTA
           (GI:1209099) [Arabidopsis thaliana]
          Length = 303

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 432 SSSITRSVSTRKSYLNYQSSEPQKAPMNRSTNARNCYSHTSTGSMTSFVWEDESIYD 602
           ++S + S S   +    + S P+ AP+ RS+  R    H  TG   + +W+  S  D
Sbjct: 21  TASASESASIALTSKRKRKSPPRNAPLQRSSPYRGVTRHRWTGRYEAHLWDKNSWND 77


>At1g76780.1 68414.m08935 expressed protein ; expression supported by
            MPSS
          Length = 1871

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +1

Query: 130  IIQILFKAKQNGRRLQNVDRRVSSHHQRETERISHQMVRRG 252
            I ++L +A  N R+ +  +  V++  + ETER+S + V+ G
Sbjct: 980  IQELLMEAGHNDRKEEEQNENVTAEVELETERVSSKKVQEG 1020


>At5g47500.1 68418.m05865 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 362

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 341 LNSNKESKHVQCVLKSIPKNVSRRLTFRSNEFFYNE 448
           LN + + + VQ  + SIPKN ++ +T +    FY E
Sbjct: 65  LNGHAQFRSVQDAVDSIPKNNNKSITIKIAPGFYRE 100


>At4g19420.1 68417.m02857 pectinacetylesterase family protein
           contains Pfam profile: PF03283 pectinacetylesterase
          Length = 397

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 534 NCYSHTSTGSMTSFVWEDESI 596
           +CY+H  T + TS+ W+D  I
Sbjct: 331 SCYTHCQTETQTSWFWQDSPI 351


>At1g73430.1 68414.m08500 sec34-like family protein contains Pfam
           PF04136: Sec34-like family profile; similar to Conserved
           oligomeric Golgi complex component 3 (Vesicle docking
           protein SEC34 homolog) (p94) (Swiss-Prot:Q96JB2) [Homo
           sapiens]
          Length = 784

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
 Frame = +2

Query: 308 LSELIRIKIYGLNSNKESKHV---QCVLKSIPKNVSRRLTFRSNEFFYNEISFY 460
           L  ++++++ G  S ++S+ +   +  L+ I  +V+ RLTFR+  +  +EI+ Y
Sbjct: 417 LVHILKVEVLGDQSARQSEPLAGLRPTLQRILADVNERLTFRARTYIRDEIANY 470


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 332  IYGLNSNKESKHVQCVLKSIPKNVSRRLTFRSNEFFYNEI 451
            +Y  N+++ S+H    LK+  K + R++ FRS+   Y ++
Sbjct: 3226 LYSGNNDESSEHTLSKLKTEHKRLQRKVIFRSDPKKYQDL 3265


>At1g33170.1 68414.m04096 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 639

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 428 NEFFYNEISFYEKVLPELSKFR 493
           NE +   IS+Y++++PELS+ R
Sbjct: 468 NEVWKERISYYKQIMPELSRGR 489


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,959,855
Number of Sequences: 28952
Number of extensions: 263569
Number of successful extensions: 821
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)