Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0120
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14510.1 68416.m01837 geranylgeranyl pyrophosphate synthase, ...    29   2.9  
At1g12540.1 68414.m01453 basic helix-loop-helix (bHLH) family pr...    29   2.9  
At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi...    29   3.8  
At3g14550.1 68416.m01843 geranylgeranyl pyrophosphate synthase, ...    29   3.8  
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf...    28   5.0  
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf...    28   5.0  
At3g08670.1 68416.m01007 expressed protein                             28   6.6  
At2g26730.1 68415.m03206 leucine-rich repeat transmembrane prote...    28   6.6  
At2g18640.1 68415.m02171 geranylgeranyl pyrophosphate synthase, ...    27   8.8  

>At3g14510.1 68416.m01837 geranylgeranyl pyrophosphate synthase,
           putative / GGPP synthetase, putative /
           farnesyltranstransferase, putative similar to
           gi:9294375; similar to geranylgeranyl pyrophosphate
           synthetase GB:P34802 [Arabidopsis thaliana]
          Length = 284

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = -2

Query: 539 RVLQRRPPPQVLPACADDGIVGKLTARPVLLLTVCALVDPSE-YEL*ASRSARLMMAGSS 363
           R +  R P  V  A     + G    RP+L + VC LV   E   + A+ +  ++   S 
Sbjct: 7   RSVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSL 66

Query: 362 VRAALPCRDD 333
           +   LPC D+
Sbjct: 67  IHDDLPCMDN 76


>At1g12540.1 68414.m01453 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 198

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 645 YFKDDLLKQIRKLLNYGDRLARSQRHPVHRSSCVVTGLA-ETATAAGVTGL 496
           Y KD L K+I+++    DR+ RS  HP  R    +  LA  T +  G T +
Sbjct: 63  YIKD-LQKKIKEVSEKRDRIKRSITHPSSRGEFSIRSLASSTCSCVGDTNI 112


>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 682

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
 Frame = +1

Query: 328 SQSS--RQGRAARTLDPAIMRRALLDAHSSYSEGSTSAQTVNNRTGRAVNLPTI---PSS 492
           SQ+S  + G   R L P   R A       YS    S    NN + R          P  
Sbjct: 92  SQTSPVKPGSVNRNLKPGHRRSASAGTPLIYSGLGFSPVNNNNNSSRGGGSGATSPNPGV 151

Query: 493 AQAGNTCGGGRLCKTRYNTTAPMYGVSLTSG 585
              GN C  GR+ KT   T A +   +L +G
Sbjct: 152 LPTGNICPSGRILKTGMATRASVRPETLCTG 182


>At3g14550.1 68416.m01843 geranylgeranyl pyrophosphate synthase,
           putative / GGPP synthetase, putative /
           farnesyltranstransferase, putative similar to SP|Q43133
           Geranylgeranyl pyrophosphate synthetase, chloroplast
           precursor (GGPP synthetase) (GGPS) [Includes:
           Dimethylallyltransferase (EC 2.5.1.1);
           Geranyltranstransferase (EC 2.5.1.10);
           Farnesyltranstransferase (EC 2.5.1.29)] {Sinapis alba};
           contains Pfam profile PF00348: Polyprenyl synthetase
          Length = 360

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -2

Query: 524 RPPPQVLPACADDGIVGKLTARPVLLLTVCALVDPSE-YEL*ASRSARLMMAGSSVRAAL 348
           R P  V  A     + G    RP+L + VC LV   E   + A+ +  ++   S +   L
Sbjct: 88  REPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDL 147

Query: 347 PCRDD 333
           PC D+
Sbjct: 148 PCMDN 152


>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
           profile: PF00400 WD domain, G-beta repeat (7 copies)
          Length = 1135

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 645 YFKDDLLKQIRKLLNYGDRLARSQRHPVHRSSCVV-TGLAETA 520
           Y  DDL K + ++L+ G  +     HPV ++  +V T L + A
Sbjct: 341 YSTDDLPKNVSRILSQGSAIKSMDFHPVQQTMLLVGTNLGDIA 383


>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
           profile: PF00400 WD domain, G-beta repeat (7 copies)
          Length = 1137

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 645 YFKDDLLKQIRKLLNYGDRLARSQRHPVHRSSCVV-TGLAETA 520
           Y  DDL K + ++L+ G  +     HPV ++  +V T L + A
Sbjct: 341 YSTDDLPKNVSRILSQGSAIKSMDFHPVQQTMLLVGTNLGDIA 383


>At3g08670.1 68416.m01007 expressed protein 
          Length = 567

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -1

Query: 465 RSTGSIINSLRASRSFRVRAMSVQERSSHDGRVQCP-RGSALPGRLTP-RS*FDSSVYKM 292
           RS  SI+N+  AS S  +R  S   RSS   R   P R S+     TP R    SS   M
Sbjct: 174 RSPSSILNTSSASVSSYIRPSSPSSRSSSSARPSTPTRTSSASRSSTPSRIRPGSSSSSM 233

Query: 291 SRIRRAVWTR 262
            + R ++ +R
Sbjct: 234 DKARPSLSSR 243


>At2g26730.1 68415.m03206 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 658

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 570 VFDFWPTGHHSSKVSGSASAGR 635
           VFDF PTG  S+ + GS  +GR
Sbjct: 422 VFDFMPTGSLSALLHGSRGSGR 443


>At2g18640.1 68415.m02171 geranylgeranyl pyrophosphate synthase,
           putative / GGPP synthetase, putative /
           farnesyltranstransferase, putative similar to
           gi:1944371; contains GB:L22347
          Length = 372

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 482 IVGKLTARPVLLLTVCALVDPSE-YEL*ASRSARLMMAGSSVRAALPCRDD 333
           + G    RP+L L  C LV   E   + A+ +  ++   S ++  LPC D+
Sbjct: 117 LAGGKRVRPILCLAACELVGGEERLAIQAACAVEMIHTMSLIKDDLPCMDN 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,089,796
Number of Sequences: 28952
Number of extensions: 314455
Number of successful extensions: 919
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)