Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0115
         (646 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16280.1 68418.m01901 expressed protein                             32   0.28 
At5g65290.1 68418.m08212 LMBR1 integral membrane family protein ...    29   2.6  
At1g14240.2 68414.m01686 nucleoside phosphatase family protein /...    28   4.6  
At1g14240.1 68414.m01685 nucleoside phosphatase family protein /...    28   4.6  
At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4...    28   6.1  
At2g26900.1 68415.m03227 bile acid:sodium symporter family prote...    27   8.1  
At1g05430.1 68414.m00551 expressed protein                             27   8.1  

>At5g16280.1 68418.m01901 expressed protein
          Length = 1265

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 301  SIDLYHVNTPLTLRYKS*GLSIVTTAAPPFRPKRI--TASRQKQAGWWYLPTRTHK 462
            S  L  +   + +R  S G+S VT     F P     T+S   Q+GW Y+PT T +
Sbjct: 1117 STSLCEIKLKMVIRNTSDGISSVTINTNDFLPDAAATTSSSGNQSGWRYVPTITEE 1172


>At5g65290.1 68418.m08212 LMBR1 integral membrane family protein
           contains Pfam PF04791: LMBR1-like conserved region
          Length = 733

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +3

Query: 366 SYNGCPTLQTETHYCFTAETGRV--VVPTHADSQEVLPPVIMQIITLVLNYNYF 521
           SYN    +Q  +   F  + GR+   VP        + P+IM I TL++  N+F
Sbjct: 447 SYNFINLIQLHSETIFEKKMGRIDDAVPVFGQRFNEIYPLIMVIYTLLVASNFF 500


>At1g14240.2 68414.m01686 nucleoside phosphatase family protein /
           GDA1/CD39 family protein low similarity to nod factor
           binding lectin-nucleotide phosphohydrolase [Dolichos
           biflorus] GI:4868375; contains Pfam profile PF01150:
           GDA1/CD39 (nucleoside phosphatase) family
          Length = 479

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 578 GNQTYFIYSHEFLSYNK 528
           GN +Y IYSH FL Y K
Sbjct: 245 GNISYTIYSHSFLDYGK 261


>At1g14240.1 68414.m01685 nucleoside phosphatase family protein /
           GDA1/CD39 family protein low similarity to nod factor
           binding lectin-nucleotide phosphohydrolase [Dolichos
           biflorus] GI:4868375; contains Pfam profile PF01150:
           GDA1/CD39 (nucleoside phosphatase) family
          Length = 483

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 578 GNQTYFIYSHEFLSYNK 528
           GN +Y IYSH FL Y K
Sbjct: 249 GNISYTIYSHSFLDYGK 265


>At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4)
            identical to AtMRP4 GI:2959767 from [Arabidopsis
            thaliana]
          Length = 1516

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 583  RQVIKLILFTPMSFFHITSNGK 518
            RQ++  IL  PMSFF  T +G+
Sbjct: 1030 RQILNSILHAPMSFFDTTPSGR 1051


>At2g26900.1 68415.m03227 bile acid:sodium symporter family protein
           low similarity to SP|Q12908 Ileal sodium/bile acid
           cotransporter {Homo sapiens}; contains Pfam profile
           PF01758: Sodium Bile acid symporter family
          Length = 409

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 453 DSQEVLPPVIMQIITLV-LNYNYFPLLVI*KKLMGVNKISLITW 581
           D  E  P  + Q   ++ L    FPL VI   L+G+ K SL+TW
Sbjct: 82  DLPESTPKELSQYEKIIELLTTLFPLWVILGTLVGIFKPSLVTW 125


>At1g05430.1 68414.m00551 expressed protein
          Length = 269

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 7   WQSMSRHQYRQATYGEPG 60
           WQ MS+H Y ++ YG+ G
Sbjct: 125 WQLMSKHFYPESVYGDEG 142


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,902,249
Number of Sequences: 28952
Number of extensions: 270098
Number of successful extensions: 559
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)