Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0104
         (646 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54020.2 68414.m06155 myrosinase-associated protein, putative...    31   0.65 
At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ...    30   1.1  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   3.5  
At4g27120.2 68417.m03898 expressed protein                             28   6.1  
At4g27120.1 68417.m03897 expressed protein                             28   6.1  
At4g29310.1 68417.m04190 expressed protein                             27   8.1  
At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containi...    27   8.1  
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    27   8.1  

>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
           strong similarity to myrosinase-associated proteins
           GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
           [Brassica napus]; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 372

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 143 LACGSQAFIATLLFDPSMSALPIIAKQNSPSVGLFT 250
           + C S + +  LL  P +  L  I+ QN P+VGLFT
Sbjct: 1   MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT 36


>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
           (SPL7) identical to squamosa promoter binding
           protein-like 7 [Arabidopsis thaliana] GI:5931635;
           contains Pfam profile PF03110: SBP domain
          Length = 775

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +1

Query: 280 TVVRQVSFTLLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGL-CLNASKAEA 456
           T+V+++    L+ C CD +      N      +H   ++   +K P AGL C    +A+ 
Sbjct: 632 TLVKKMEPDSLVHCTCDCDVRLLHENMDLASDIHRKHQSPIESKDPEAGLDCKERIQADC 691

Query: 457 SLAESGKD 480
           S    GK+
Sbjct: 692 SPDSGGKE 699


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 20  RAKAGLIQMFSTHRDCESTAYRSFSIK 100
           RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 291 RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At4g27120.2 68417.m03898 expressed protein
          Length = 298

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +1

Query: 385 LGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK-QCDFTSRVSHSKRE 561
           + RA GG ++        AS + +++ E+G      +  E+GG++ +          +RE
Sbjct: 47  VARAGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDEDEAGGTQARASKKKEKKRQERE 106

Query: 562 TRRRSPFGSRE 594
            +R++   +RE
Sbjct: 107 AQRQAEEATRE 117


>At4g27120.1 68417.m03897 expressed protein
          Length = 298

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +1

Query: 385 LGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK-QCDFTSRVSHSKRE 561
           + RA GG ++        AS + +++ E+G      +  E+GG++ +          +RE
Sbjct: 47  VARAGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDEDEAGGTQARASKKKEKKRQERE 106

Query: 562 TRRRSPFGSRE 594
            +R++   +RE
Sbjct: 107 AQRQAEEATRE 117


>At4g29310.1 68417.m04190 expressed protein
          Length = 424

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -2

Query: 195 IEGSKSNVAMNAWLPQASYPCGNFSGTSC*KLFILKDR*AVLSQSLCVLNIWIK 34
           I G K ++ ++ +  +  + CG  SG    K+ +  D  A LS+++   N W K
Sbjct: 85  ISGKKISLRVSVYAGRTGHTCGVASGKLLGKVEVAVDLAAALSRTVAFHNGWKK 138


>At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 638

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 19/49 (38%), Positives = 21/49 (42%)
 Frame = +1

Query: 337 TAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDM 483
           T  Y    S G LVH L      A  PSA    N  +   SLAE+  DM
Sbjct: 13  TITYYHPMSIGLLVHPLSPHIPPASSPSASTAGNHHQRIFSLAETCSDM 61


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 446 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 586
           RPK   P  A + ++WSP S  A +  + +VA  +  A   D+   +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,928,981
Number of Sequences: 28952
Number of extensions: 283533
Number of successful extensions: 662
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)