Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0081
         (614 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09730.1 68414.m01092 Ulp1 protease family protein low simila...    29   2.4  
At3g25910.1 68416.m03230 expressed protein                             27   9.9  
At3g23240.1 68416.m02929 ethylene-responsive factor 1 / ethylene...    27   9.9  
At2g17600.1 68415.m02036 DC1 domain-containing protein contains ...    27   9.9  

>At1g09730.1 68414.m01092 Ulp1 protease family protein low
           similarity to SP|Q9GZR1 SUMO-1-specific protease 1 (EC
           3.4.22.-) (Sentrin-specific protease SENP6) (Protease
           FKSG6) {Homo sapiens}; contains Pfam profile PF02902:
           Ulp1 protease family, C-terminal catalytic domain
          Length = 984

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 380 QPKTYVDDDLDDIPLKNIKKEIQPEETVS---MEKYYFGKLGSDEPGP 514
           QP+T+V+D + D  +  +K +IQ EE         ++F KL   +  P
Sbjct: 458 QPETFVNDTIIDFYINYLKNQIQTEEKHRFHFFNSFFFRKLADLDKDP 505


>At3g25910.1 68416.m03230 expressed protein
          Length = 372

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 533 QCPVCDEEFHNNITLMTHIYSHVVEP 610
           +CPVC E  HN I L+   Y +   P
Sbjct: 42  RCPVCMEHPHNGILLICSSYENGCRP 67


>At3g23240.1 68416.m02929 ethylene-responsive factor 1 / ethylene
           response factor 1 (ERF1) identical to ethylene response
           factor 1 GB:AAD03544 from [Arabidopsis thaliana]
          Length = 218

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = +2

Query: 386 KTYVDDDLDDIPLKNIKKEIQPEETVSMEKYYFGKLGSD 502
           +TY+D D  D+P+K++      +    + +  +GK  ++
Sbjct: 58  QTYIDSDSQDLPIKSVSSRKSEKSYRGVRRRPWGKFAAE 96


>At2g17600.1 68415.m02036 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 580

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 500 DEPGPRVAIAVQCPVCDEEFHNNITLMTHIYSHVVEPP 613
           +EP P       C  CD EFH+    + H+Y   +  P
Sbjct: 39  EEPSPCSTFHYSCTTCDVEFHD----ICHVYPRKLTHP 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,606,389
Number of Sequences: 28952
Number of extensions: 150791
Number of successful extensions: 419
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)