Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0072
(689 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40070.1 68415.m04923 expressed protein 32 0.31
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 31 0.72
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 31 0.72
At1g72390.1 68414.m08373 expressed protein 29 2.2
At1g64040.1 68414.m07254 serine/threonine protein phosphatase PP... 29 2.2
At4g21670.1 68417.m03139 double-stranded RNA-binding domain (DsR... 29 2.9
At4g14510.1 68417.m02236 expressed protein contains Pfam domain,... 29 2.9
At2g28500.1 68415.m03463 LOB domain protein 11 / lateral organ b... 29 3.8
At5g38560.1 68418.m04662 protein kinase family protein contains ... 28 5.1
At5g04040.1 68418.m00384 patatin-related contains Patatin domain... 28 5.1
At1g11660.1 68414.m01339 heat shock protein, putative strong sim... 28 5.1
At5g41860.1 68418.m05097 expressed protein 28 6.7
At5g23700.1 68418.m02778 hypothetical protein 28 6.7
At5g01500.1 68418.m00064 mitochondrial substrate carrier family ... 28 6.7
At3g46820.1 68416.m05082 serine/threonine protein phosphatase PP... 28 6.7
At1g55430.1 68414.m06340 DC1 domain-containing protein contains ... 28 6.7
At2g31050.1 68415.m03788 plastocyanin-like domain-containing pro... 27 8.9
At1g32000.1 68414.m03937 hypothetical protein 27 8.9
At1g16190.1 68414.m01939 DNA repair protein RAD23, putative simi... 27 8.9
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 32.3 bits (70), Expect = 0.31
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 2/124 (1%)
Frame = +2
Query: 296 SLSPQSPL--LTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASACGLIR 469
S P +P TV T SL + +T S T KP +S + L ++ +A
Sbjct: 202 SSRPSTPTSRATVSSATRPSLTNSRSTVSATT---KPTPMSRSTSLSSSRLTPTASKPTT 258
Query: 470 FRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRS 649
+A++ T S +S +RS L A + T SR T+ PS+ SRS
Sbjct: 259 -STARSAGSVTRSTPSTTTKSAGPSRSTTPLSRSTARSSTPTSRP----TLPPSKTISRS 313
Query: 650 ETPT 661
TPT
Sbjct: 314 STPT 317
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 31.1 bits (67), Expect = 0.72
Identities = 27/100 (27%), Positives = 36/100 (36%)
Frame = +2
Query: 365 ATFSGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLA 544
A +G A T PP + AP PTT PA+ + T + A PP P
Sbjct: 16 AGVTGQAPTS-PPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPANPPPPV 74
Query: 545 RSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTA 664
S P A S P ++ P+ P + P A
Sbjct: 75 SSPPPASPPPATPPPVASPPPPVASPPPATPPPVATPPPA 114
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 31.1 bits (67), Expect = 0.72
Identities = 27/100 (27%), Positives = 36/100 (36%)
Frame = +2
Query: 365 ATFSGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLA 544
A +G A T PP + AP PTT PA+ + T + A PP P
Sbjct: 16 AGVTGQAPTS-PPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPANPPPPV 74
Query: 545 RSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTA 664
S P A S P ++ P+ P + P A
Sbjct: 75 SSPPPASPPPATPPPVASPPPPVASPPPATPPPVATPPPA 114
>At1g72390.1 68414.m08373 expressed protein
Length = 1088
Score = 29.5 bits (63), Expect = 2.2
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 1/112 (0%)
Frame = +2
Query: 299 LSPQSPLLTVRDCTASSLMKTSATFS-GTAGTEKPPAISAAPDLPTTESPASACGLIRFR 475
+S QSP L+ S L S FS G+ GT +A D T PA
Sbjct: 302 ISAQSPRLSAGGPPQSPLSSKSGEFSGGSMGTHYGAVAAAQKDKAVTSIPAIGATQSVGS 361
Query: 476 SAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPS 631
SA Q AQ + T + +I + ++ + ++P + +PS
Sbjct: 362 SANEAMQQRQHQAQMAAKRRTNSLPKTQVISTVGSPVSVNTISVPVNARSPS 413
>At1g64040.1 68414.m07254 serine/threonine protein phosphatase PP1
isozyme 3 (TOPP3) / phosphoprotein phosphatase 1
identical to SP|P48483 Serine/threonine protein
phosphatase PP1 isozyme 3 (EC 3.1.3.16) {Arabidopsis
thaliana}, phosphoprotein phosphatase 1 GB:AAA32838
GI:166799 from [Arabidopsis thaliana]
Length = 322
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +1
Query: 328 SRLYGIFPDENKCDVFWNCWNGEASRYQCSPGLAYDRESRVCMWADQVPECKN-EEVANG 504
+R+YG + DE K W + C P A E +CM PE K+ +E+ N
Sbjct: 128 NRIYGFY-DECKKRYSVRVWKIFTDCFNCLPVAALIDEKILCMHGGLSPELKHLDEIRN- 185
Query: 505 FGCPAPGEVSNAG 543
P P ++ + G
Sbjct: 186 --IPRPADIPDHG 196
>At4g21670.1 68417.m03139 double-stranded RNA-binding domain
(DsRBD)-containing protein contains Pfam profile
PF00035: Double-stranded RNA binding motif
Length = 981
Score = 29.1 bits (62), Expect = 2.9
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
Frame = +2
Query: 374 SGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSA 553
SG G + P + D TE I SA D PV+ P + S+
Sbjct: 464 SGLNGNKDPLSFDGMAD---TEVERRLKEAISASSAVLPAANIDPRIAAPVQFPMASASS 520
Query: 554 VTLIPKIAVNITSVSRALPASTVA-PSEPFSRSETPTALVTAKTP 685
V+ + V + V +A+ S +A PS PF + + PT++ P
Sbjct: 521 VS----VPVPVQVVQQAIQPSAMAFPSIPFQQPQQPTSIAKHLVP 561
>At4g14510.1 68417.m02236 expressed protein contains Pfam domain,
PF04581: Protein of unknown function (DUF578)
Length = 932
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -2
Query: 361 CFHQGRCRTVSNSEEWRLGAQAVSSLRTQRCEGSRSSRSSIWNLWRR--KRDRCRRFSVR 188
C G ++S +R G + +++ CEGS SS SS W R K+++ R V
Sbjct: 31 CKFHGTSSSIS-LRSYRFGFSFMKNVKRLSCEGSSSSSSSRNENWNRTQKQNQFRPSKVV 89
Query: 187 LHR 179
L+R
Sbjct: 90 LNR 92
>At2g28500.1 68415.m03463 LOB domain protein 11 / lateral organ
boundaries domain protein 11 (LBD11) identical to
SP|Q9SK08 LOB domain protein 11 {Arabidopsis thaliana}
Length = 229
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Frame = +2
Query: 338 TASSLMKTSATF------SGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSA 481
TAS++ K + T S T+ PP+ P P SP +AC ++R R A
Sbjct: 11 TASAVAKVTETTTPVNSPSPTSSPPPPPSPQQPPQPPVVLSPCAACKILRRRCA 64
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 28.3 bits (60), Expect = 5.1
Identities = 24/93 (25%), Positives = 35/93 (37%)
Frame = +2
Query: 407 ISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNI 586
+S P LP P+S +T+ T +A PPV P + + +
Sbjct: 1 MSLVPPLPILSPPSSNSSTTAPPPLQTQP--TTPSAPPPVTPPPSPPQSPPPVVSSSPPP 58
Query: 587 TSVSRALPASTVAPSEPFSRSETPTALVTAKTP 685
VS P+S+ PS P S PT + P
Sbjct: 59 PVVSSPPPSSSPPPSPPVITSPPPTVASSPPPP 91
>At5g04040.1 68418.m00384 patatin-related contains Patatin domain
PF01734
Length = 825
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 21 LVPGLSSQYVFEVFISVSGRPR--RSCGPRVLQMPRRLRFLPSPHLL 155
++ L+S F+ ++GR C PR + PR L +L SPH++
Sbjct: 324 MLRNLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVV 370
>At1g11660.1 68414.m01339 heat shock protein, putative strong
similarity to gb|Z70314 heat-shock protein from
Arabidopsis thaliana and is a member of the PF|00012
Hsp70 protein family
Length = 773
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -3
Query: 453 ADAGLSVVGKSGAALIAGGFSVPAVPENVALVFIREDAVQSRTVRSGDWGLKLCPLSALN 274
AD+GLS+ L+ G +PA+ + ++ +F RE RTV + + + C L
Sbjct: 324 ADSGLSLDQIHSVELVGSGSRIPAISKMLSSLFKRE---LGRTVNASECVARGCALQCAM 380
Query: 273 VVKVVAV 253
+ V V
Sbjct: 381 LSPVFRV 387
>At5g41860.1 68418.m05097 expressed protein
Length = 192
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 500 TDSAAQPPVRS--PTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSR 646
T S+A+P S P+L+ S +P VN ++R P + + PF R
Sbjct: 61 TTSSAEPDPDSTNPSLSESDEVTVPVNFVNFHPINRHFPRRPLTTTAPFKR 111
>At5g23700.1 68418.m02778 hypothetical protein
Length = 572
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +2
Query: 518 PPVRSP---TLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKTPK 688
PP P + AR + P I NIT ++ +S+ FSRS TP A PK
Sbjct: 87 PPSSGPINGSFARRNRSHSPAIGRNITEQVTSVRSSSTGRPSTFSRSSTPNASPLWMPPK 146
>At5g01500.1 68418.m00064 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 415
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = -3
Query: 441 LSVVGKSGAALIAGGFSVPAVPENVALVFIREDAVQSRTVRSGDWGLKLCPLSALNVVKV 262
LS+V K A AG F+ A A + + +Q+ VR+G K A+ ++
Sbjct: 109 LSIVPKDAALFFAGAFAGAAAKSVTAPLDRIKLLMQTHGVRAGQQSAK----KAIGFIEA 164
Query: 261 VAVLGQVFGICG 226
+ ++G+ GI G
Sbjct: 165 ITLIGKEEGIKG 176
>At3g46820.1 68416.m05082 serine/threonine protein phosphatase PP1
isozyme 5 (TOPP5) / phosphoprotein phosphatase 1
identical to SP|P48485 Serine/threonine protein
phosphatase PP1 isozyme 5 (EC 3.1.3.16) {Arabidopsis
thaliana}, phosphoprotein phosphatase 1 GI:166803
{Arabidopsis thaliana}
Length = 312
Score = 27.9 bits (59), Expect = 6.7
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 328 SRLYGIFPDENKCDVFWNCWNGEASRYQCSPGLAYDRESRVCMWADQVPECKN-EEVANG 504
+R+YG + DE K W + C P A E +CM PE N E++ N
Sbjct: 137 NRIYGFY-DECKRRFNVKLWKVFTDTFNCLPVAAVIDEKILCMHGGLSPELINVEQIKN- 194
Query: 505 FGCPAPGEVSNAG 543
P +V +AG
Sbjct: 195 --IERPTDVPDAG 205
>At1g55430.1 68414.m06340 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 657
Score = 27.9 bits (59), Expect = 6.7
Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 1/101 (0%)
Frame = +1
Query: 166 WKCDNGVAELKTCGNGLAFDATDSKYLTENCDYLHNVECGERTQLEPPISTPH-CSRLYG 342
W CD CG L D D Y C + + C ++ PH S
Sbjct: 234 WPCD-------VCGFLLNKDTDDLVYACLPCSLMVHRSCIYLPRVIKITRHPHRLSLTSS 286
Query: 343 IFPDENKCDVFWNCWNGEASRYQCSPGLAYDRESRVCMWAD 465
+ P + C + + + +Y C G Y S+ W D
Sbjct: 287 LQPGDFSCGLCRHTVDVNCGQYSCDKGCQYAIHSKCATWRD 327
>At2g31050.1 68415.m03788 plastocyanin-like domain-containing
protein contains plastocyanin-like domain Pfam:PF02298
Length = 200
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 618 VLAGNALETDV-IFTAIFGMSVTAERASVGDLTGGWAAESVCY 493
++ NA T + I A+FG+SV VGD + GW SV Y
Sbjct: 3 LIKSNAFFTSLLILVALFGISVGGTVHKVGD-SDGWTIMSVNY 44
>At1g32000.1 68414.m03937 hypothetical protein
Length = 181
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = +1
Query: 520 PGEVSNAGSFSRHAHPEDC---RKYYICLEGVAREY 618
PG V RH HPE+ R ++ LEG R Y
Sbjct: 84 PGSVKYPADLLRHLHPEEAARFRYWFRTLEGQLRAY 119
>At1g16190.1 68414.m01939 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota]
Length = 368
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 491 K*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAP--SEPFSRSET 655
K +T S+A P PT ++ +A T+ S A+PAS P +P ++S+T
Sbjct: 76 KSKTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSIAVPASNSTPVQEQPTAQSDT 132
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,468,878
Number of Sequences: 28952
Number of extensions: 338777
Number of successful extensions: 1103
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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