Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0070
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50180.1 68416.m05486 hypothetical protein                          30   1.2  
At4g26710.2 68417.m03850 ATP synthase subunit H family protein c...    28   4.9  
At4g26710.1 68417.m03849 ATP synthase subunit H family protein c...    28   4.9  
At5g42170.1 68418.m05133 family II extracellular lipase, putativ...    27   8.6  
At5g41720.1 68418.m05073 F-box family protein contains Pfam PF00...    27   8.6  

>At3g50180.1 68416.m05486 hypothetical protein
          Length = 588

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -1

Query: 607 KKFDGTREHNENIQKTNSK-HVVLLPTSIDFDESN 506
           K +D  RE+ EN+++ N +   V+LP SI +++ N
Sbjct: 94  KSYDKLREYVENVRRQNEESERVVLPKSISYEDQN 128


>At4g26710.2 68417.m03850 ATP synthase subunit H family protein
           contains similarity to Swiss-Prot:O15342 Vacuolar ATP
           synthase subunit H (V-ATPase H subunit) (Vacuolar proton
           pump H subunit) (V-ATPase M9.2 subunit) (V-ATPase 9.2
           kDa membrane accessory protein) [Homo sapiens]
          Length = 70

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +2

Query: 2   LITLLCAAMLRQVYMVCRRSCLNAAPGVYNMYSTLSGCCARCIWFV 139
           ++T L  A++  +  +C R C N  P    ++ TL      C W +
Sbjct: 4   VVTSLIFAVVGIIASICTRICFNKGPSTNLLHLTLVITATVCCWMM 49


>At4g26710.1 68417.m03849 ATP synthase subunit H family protein
           contains similarity to Swiss-Prot:O15342 Vacuolar ATP
           synthase subunit H (V-ATPase H subunit) (Vacuolar proton
           pump H subunit) (V-ATPase M9.2 subunit) (V-ATPase 9.2
           kDa membrane accessory protein) [Homo sapiens]
          Length = 70

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +2

Query: 2   LITLLCAAMLRQVYMVCRRSCLNAAPGVYNMYSTLSGCCARCIWFV 139
           ++T L  A++  +  +C R C N  P    ++ TL      C W +
Sbjct: 4   VVTSLIFAVVGIIASICTRICFNKGPSTNLLHLTLVITATVCCWMM 49


>At5g42170.1 68418.m05133 family II extracellular lipase, putative
           similar to family II lipase EXL3 [Arabidopsis thaliana]
           GI:15054386; contains InterPro Entry IPR001087 Lipolytic
           enzyme, G-D-S-L family
          Length = 319

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 161 IVTNRDRVQTIYTWRSIQTRSSTYYIHLVQHSGKIVYKPYTLGA 30
           +V + + +   YT RSI+   ++Y  +L   + K V   Y LGA
Sbjct: 134 VVASSNDIAHTYTARSIKYNKTSYADYLADSASKFVSALYGLGA 177


>At5g41720.1 68418.m05073 F-box family protein contains Pfam
           PF00646: F-box domain; similar to unknown protein
           (gb|AAD32901.1);
          Length = 186

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 327 THYKLFLCFKYLAVKRYRVTDYILF-PTSRAFRLTHNKTPHF 449
           TH+ + LC   +   R ++ DYI+  P ++ +R+  N    F
Sbjct: 102 THHGILLCVDVVFKGRQKIPDYIVCKPATKQYRIIPNPKTRF 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,687,642
Number of Sequences: 28952
Number of extensions: 270742
Number of successful extensions: 623
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)