Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0061
(673 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4) id... 115 3e-26
At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1) id... 111 3e-25
At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4) id... 109 1e-24
At4g00680.1 68417.m00093 actin-depolymerizing factor, putative s... 108 3e-24
At1g01750.1 68414.m00094 actin-depolymerizing factor, putative s... 108 3e-24
At5g52360.1 68418.m06497 actin-depolymerizing factor, putative s... 107 9e-24
At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6) id... 106 2e-23
At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3) id... 105 3e-23
At3g46000.1 68416.m04977 actin-depolymerizing factor, putative (... 104 6e-23
At4g25590.1 68417.m03687 actin-depolymerizing factor, putative s... 101 4e-22
At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5) id... 95 5e-20
At4g34970.1 68417.m04957 actin-depolymerizing factor, putative s... 89 3e-18
At3g45990.1 68416.m04976 actin-depolymerizing factor, putative s... 87 8e-18
At5g59880.2 68418.m07509 actin-depolymerizing factor 3 (ADF3) id... 73 1e-13
At5g63320.1 68418.m07946 expressed protein 31 0.53
At3g03290.1 68416.m00326 universal stress protein (USP) family p... 31 0.53
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 29 3.7
At5g28810.1 68418.m03542 hypothetical protein 27 8.6
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)... 27 8.6
At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa... 27 8.6
At1g64430.1 68414.m07302 expressed protein 27 8.6
>At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 139
Score = 115 bits (277), Expect = 3e-26
Identities = 57/142 (40%), Positives = 88/142 (61%), Gaps = 1/142 (0%)
Frame = +1
Query: 61 ASGVTVSDVCKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 237
ASG+ V D CK + E+K + HR++V+ I + +KQ+ VE VGE YE F L
Sbjct: 5 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLP--- 61
Query: 238 TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVG 417
ECRY ++DF++ T+E +K K+F ++WCPD AKV+ KM+Y+SS D K+ L G
Sbjct: 62 ADECRYAIYDFDFV-----TAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDG 116
Query: 418 VQKYIQATDLSEASQEAVEEKL 483
+Q +QATD +E + ++ ++
Sbjct: 117 IQVELQATDPTEMDLDVLKSRV 138
>At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1)
identical to SP|Q39250 Actin-depolymerizing factor 1
(ADF-1) (AtADF1) {Arabidopsis thaliana}
Length = 139
Score = 111 bits (268), Expect = 3e-25
Identities = 56/132 (42%), Positives = 84/132 (63%), Gaps = 1/132 (0%)
Frame = +1
Query: 61 ASGVTVSDVCKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 237
ASG+ V D CK + E+K + HR++V+ I + +KQ+ VE VG+ YE+F L
Sbjct: 5 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLP--- 61
Query: 238 TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVG 417
ECRY ++DF++ T+E +K K+F ++WCPD AKV+ KM+Y+SS D K+ L G
Sbjct: 62 ADECRYAIYDFDFV-----TAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDG 116
Query: 418 VQKYIQATDLSE 453
+Q +QATD +E
Sbjct: 117 IQVELQATDPTE 128
>At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 132
Score = 109 bits (263), Expect = 1e-24
Identities = 54/139 (38%), Positives = 85/139 (61%), Gaps = 1/139 (0%)
Frame = +1
Query: 70 VTVSDVCKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGGTGE 246
+ V D CK + E+K + HR++V+ I + +KQ+ VE VGE YE F L E
Sbjct: 1 MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLP---ADE 57
Query: 247 CRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK 426
CRY ++DF++ T+E +K K+F ++WCPD AKV+ KM+Y+SS D K+ L G+Q
Sbjct: 58 CRYAIYDFDFV-----TAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQV 112
Query: 427 YIQATDLSEASQEAVEEKL 483
+QATD +E + ++ ++
Sbjct: 113 ELQATDPTEMDLDVLKSRV 131
>At4g00680.1 68417.m00093 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 108 bits (260), Expect = 3e-24
Identities = 55/143 (38%), Positives = 89/143 (62%), Gaps = 2/143 (1%)
Frame = +1
Query: 61 ASGVTVSDVCKTTYEEIKKDKKHRYVVFYIRDEK--QIDVETVGERNAEYEQFLEDLQKG 234
ASG+ V+D CK + E+K + +R++VF I DEK Q+ +E +G Y+ F +
Sbjct: 5 ASGMHVNDECKIKFLELKAKRTYRFIVFKI-DEKAQQVQIEKLGNPEETYDDFTSSIPDD 63
Query: 235 GTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLV 414
ECRY ++DF++T T + +K K+F ++W PDT++V+ KMLY+SS D K+ +
Sbjct: 64 ---ECRYAVYDFDFT-----TEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREME 115
Query: 415 GVQKYIQATDLSEASQEAVEEKL 483
G+Q +QATD SE S + ++ +L
Sbjct: 116 GIQVELQATDPSEMSLDIIKGRL 138
>At1g01750.1 68414.m00094 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 108 bits (260), Expect = 3e-24
Identities = 56/143 (39%), Positives = 90/143 (62%), Gaps = 2/143 (1%)
Frame = +1
Query: 61 ASGVTVSDVCKTTYEEIKKDKKHRYVVFYIRDEK--QIDVETVGERNAEYEQFLEDLQKG 234
ASG+ VSD CK + E+K + +R++VF I DEK Q+ ++ +G YE F + +
Sbjct: 5 ASGMHVSDECKLKFLELKAKRNYRFIVFKI-DEKAQQVMIDKLGNPEETYEDFTRSIPED 63
Query: 235 GTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLV 414
ECRY ++D+++T T E +K K+F ++W PDT++V+ KMLY+SS D K+ L
Sbjct: 64 ---ECRYAVYDYDFT-----TPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELD 115
Query: 415 GVQKYIQATDLSEASQEAVEEKL 483
G+Q +QATD SE S + ++ ++
Sbjct: 116 GIQVELQATDPSEMSLDIIKGRV 138
>At5g52360.1 68418.m06497 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 107 bits (256), Expect = 9e-24
Identities = 53/140 (37%), Positives = 87/140 (62%)
Frame = +1
Query: 61 ASGVTVSDVCKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGT 240
ASG+ V D CK + E+K + +R+++F I D +Q+ VE +G Y+ F L
Sbjct: 5 ASGMAVEDECKLKFLELKAKRNYRFIIFRI-DGQQVVVEKLGSPQENYDDFTNYLPPN-- 61
Query: 241 GECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGV 420
ECRY ++DF++T T+E +K K+F ++W PD+++V+ KM+Y+SS D K+ L G+
Sbjct: 62 -ECRYAVYDFDFT-----TAENIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGI 115
Query: 421 QKYIQATDLSEASQEAVEEK 480
Q +QATD SE S + ++ +
Sbjct: 116 QVELQATDPSEMSLDIIKSR 135
>At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6)
identical to SP|Q9ZSK2 Actin-depolymerizing factor 6
(ADF-6) (AtADF6) {Arabidopsis thaliana}
Length = 146
Score = 106 bits (254), Expect = 2e-23
Identities = 55/140 (39%), Positives = 84/140 (60%), Gaps = 1/140 (0%)
Frame = +1
Query: 64 SGVTVSDVCKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGGT 240
SG+ V+D KTT+ E+++ K HRYVVF I + +K++ VE G Y+ FL L
Sbjct: 13 SGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLPDN-- 70
Query: 241 GECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGV 420
+CRY ++DF++ TSE +K K+F +W P T+ ++ K+LYS+S D L + L G+
Sbjct: 71 -DCRYAVYDFDFV-----TSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGI 124
Query: 421 QKYIQATDLSEASQEAVEEK 480
IQATD +E E + E+
Sbjct: 125 HYEIQATDPTEVDLEVLRER 144
>At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3)
identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
(ADF 3) (AtADF3) {Arabidopsis thaliana}
Length = 139
Score = 105 bits (252), Expect = 3e-23
Identities = 51/141 (36%), Positives = 84/141 (59%), Gaps = 1/141 (0%)
Frame = +1
Query: 61 ASGVTVSDVCKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 237
ASG+ V D CK + E+K + HR++++ I + +KQ+ VE +GE +E L
Sbjct: 5 ASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLP--- 61
Query: 238 TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVG 417
ECRY +FDF++ +SE + ++F ++W PDTA+V+ KM+Y+SS D K+ L G
Sbjct: 62 ADECRYAIFDFDFV-----SSEGVPRSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDG 116
Query: 418 VQKYIQATDLSEASQEAVEEK 480
+Q +QATD +E + + +
Sbjct: 117 IQVELQATDPTEMDLDVFKSR 137
>At3g46000.1 68416.m04977 actin-depolymerizing factor, putative
(ADF2) strong similarity to SP|Q9ZSK3
Actin-depolymerizing factor 4 (ADF-4) (AtADF4)
{Arabidopsis thaliana}; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 104 bits (249), Expect = 6e-23
Identities = 54/140 (38%), Positives = 83/140 (59%)
Frame = +1
Query: 61 ASGVTVSDVCKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGT 240
ASG+ V D CK + E+K + R +V+ I D KQ+ VE +GE Y+ F L
Sbjct: 5 ASGMAVHDDCKLKFMELKAKRTFRTIVYKIED-KQVIVEKLGEPEQSYDDFAASLP---A 60
Query: 241 GECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGV 420
+CRY ++DF++ T+E +K K+F ++W PDTAKV+ KM+Y+SS D K+ L G+
Sbjct: 61 DDCRYCIYDFDFV-----TAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGI 115
Query: 421 QKYIQATDLSEASQEAVEEK 480
Q +QATD +E + + +
Sbjct: 116 QVELQATDPTEMGLDVFKSR 135
>At4g25590.1 68417.m03687 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 130
Score = 101 bits (242), Expect = 4e-22
Identities = 50/137 (36%), Positives = 83/137 (60%)
Frame = +1
Query: 70 VTVSDVCKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGEC 249
+ V D CK + E+K + +R+++F I D +Q+ VE +G + Y+ F L EC
Sbjct: 1 MAVEDECKLKFLELKSKRNYRFIIFRI-DGQQVVVEKLGNPDETYDDFTASLP---ANEC 56
Query: 250 RYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKY 429
RY +FDF++ T E +K K+F ++W PD+++V+ KM+Y+SS D K+ L G+Q
Sbjct: 57 RYAVFDFDFI-----TDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVE 111
Query: 430 IQATDLSEASQEAVEEK 480
+QATD SE S + ++ +
Sbjct: 112 LQATDPSEMSFDIIKSR 128
>At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5)
identical to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}
Length = 143
Score = 94.7 bits (225), Expect = 5e-20
Identities = 46/146 (31%), Positives = 89/146 (60%), Gaps = 2/146 (1%)
Frame = +1
Query: 55 KMAS-GVTVSDVCKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQ 228
KMA+ G+ V+D C +++ ++K K HRY+VF I ++ +++ V+ VG Y + L
Sbjct: 6 KMATTGMRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDLEDSLP 65
Query: 229 KGGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKS 408
+CRY +FDF++ T + +K K+F ++W P+ +K++ K+LY++S D L++
Sbjct: 66 ---VDDCRYAVFDFDFV-----TVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRV 117
Query: 409 LVGVQKYIQATDLSEASQEAVEEKLR 486
L G+ +QATD +E + ++++ +
Sbjct: 118 LEGIHYELQATDPTEMGFDIIQDRAK 143
>At4g34970.1 68417.m04957 actin-depolymerizing factor, putative
similar to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 130
Score = 88.6 bits (210), Expect = 3e-18
Identities = 41/138 (29%), Positives = 83/138 (60%), Gaps = 1/138 (0%)
Frame = +1
Query: 76 VSDVCKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGGTGECR 252
++D CK ++ E+K K HRYVV+ + ++ +++ V+ VG Y+ L + +CR
Sbjct: 1 MTDDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAASLPED---DCR 57
Query: 253 YGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYI 432
Y +FDF+Y T + + K+F ++W P+ +++++KM+Y++S L++ L GV +
Sbjct: 58 YAVFDFDYV-----TVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYEL 112
Query: 433 QATDLSEASQEAVEEKLR 486
QATD +E + ++++ +
Sbjct: 113 QATDPTEMGFDKIQDRAK 130
>At3g45990.1 68416.m04976 actin-depolymerizing factor, putative
similar to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 133
Score = 87.4 bits (207), Expect = 8e-18
Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 6/144 (4%)
Frame = +1
Query: 70 VTVSDVCKTTYEEIKKDKKHRYVVFYIRDEKQIDVETV------GERNAEYEQFLEDLQK 231
+ + D CK T+ E+K+ + R +V+ I D Q+ VE GER YE+F L
Sbjct: 1 MVLHDDCKLTFLELKERRTFRSIVYKIEDNMQVIVEKHHYKKMHGEREQSYEEFANSLP- 59
Query: 232 GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL 411
ECRY + D E+ ++K+ ++W P TAK++KKM+YSS+ D K+ L
Sbjct: 60 --ADECRYAILDIEFV---------PGERKICFIAWSPSTAKMRKKMIYSSTKDRFKREL 108
Query: 412 VGVQKYIQATDLSEASQEAVEEKL 483
G+Q ATDL++ S +A+ ++
Sbjct: 109 DGIQVEFHATDLTDISLDAIRRRI 132
>At5g59880.2 68418.m07509 actin-depolymerizing factor 3 (ADF3)
identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
(ADF 3) (AtADF3) {Arabidopsis thaliana}
Length = 124
Score = 73.3 bits (172), Expect = 1e-13
Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 1/141 (0%)
Frame = +1
Query: 61 ASGVTVSDVCKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 237
ASG+ V D CK + E+K + HR++++ I + +KQ+ VE +GE +E L
Sbjct: 5 ASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLP--- 61
Query: 238 TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVG 417
ECRY +FDF++ +SE + ++F ++W PDTA+ + L G
Sbjct: 62 ADECRYAIFDFDFV-----SSEGVPRSRIFFVAWSPDTAR---------------RELDG 101
Query: 418 VQKYIQATDLSEASQEAVEEK 480
+Q +QATD +E + + +
Sbjct: 102 IQVELQATDPTEMDLDVFKSR 122
>At5g63320.1 68418.m07946 expressed protein
Length = 569
Score = 31.5 bits (68), Expect = 0.53
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +3
Query: 345 GHRQGQEEDVVL*LVRRSEKVPCRSSEVHPSDRPLGSVSGGRR--REAPRHRSPINSIYT 518
G ++ QE +VV + +E V EVHP DR G R RE PR S+
Sbjct: 311 GDKEEQETEVVDMRKQENEVVDMGVEEVHPLDRSEGRTLSPHRKEREDPRASGNEESVSE 370
Query: 519 RARD 530
+A+D
Sbjct: 371 KAQD 374
>At3g03290.1 68416.m00326 universal stress protein (USP) family
protein contains Pfam profile: PF00582 universal stress
protein family
Length = 274
Score = 31.5 bits (68), Expect = 0.53
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 175 ETVGERNAEYEQFLEDLQKGGTGE 246
ET G+ +EYE+F E+ ++GG GE
Sbjct: 45 ETDGDSTSEYEEFEEEKERGGEGE 68
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 444 PLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSCPDDTRP 578
PL + SG + SP N TRA D T PA+ D+ +P
Sbjct: 307 PLATSSGPSGPNSVPGNSPSNIFLTRAGDRTSPAVDGMDVDEAQP 351
>At5g28810.1 68418.m03542 hypothetical protein
Length = 560
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 557 GVSES-GFGFVASSCVNAVYWRSVARSFSSTA 465
G+ E+ GFG +CV + WRS + F+ TA
Sbjct: 185 GIGEACGFGKTTLTCVPLLDWRSSRKRFNFTA 216
>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
identical to SP|O65607 DNA mismatch repair protein MSH3
(AtMsh3) {Arabidopsis thaliana}
Length = 1081
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -3
Query: 647 PVKSIILILFVFLCNNTKRLVVSWPRVVRAGVSESGFGFVASSCVNAVYWRSVARSFS 474
PV S + + +V + N+TK+ + P + AG+ E + VN W S +SFS
Sbjct: 679 PVDSKVPMNWVKV-NSTKKTIRYHPPEIVAGLDELALATEHLAIVNRASWDSFLKSFS 735
>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
family protein similar to C-terminal zinc-finger
[Glycine max] GI:558543; contains Pfam profile: PF00097
zinc finger, C3HC4 type (RING finger)
Length = 486
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -1
Query: 349 CPGTTTSGRASVSC*PPTCP---GTGACIQSQTGHICIPRYRPSADPR 215
C G + G +S+ P P G A ++G++C PRY ++ R
Sbjct: 217 CNGNRSDGSSSLWSQAPAVPYMHGNIATGSIESGNVCFPRYHETSSSR 264
>At1g64430.1 68414.m07302 expressed protein
Length = 559
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 570 CRQGRSVGERVRFRRELVCKCCLLAIGGAE 481
CR G S E V F + + C CL+AI A+
Sbjct: 180 CRVGISPAEEVPFGKIVRCPSCLIAIAVAQ 209
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,820,930
Number of Sequences: 28952
Number of extensions: 254414
Number of successful extensions: 953
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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