Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0060
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47560.1 68418.m05871 sodium/dicarboxylate cotransporter, put...    30   1.7  
At4g32620.1 68417.m04644 expressed protein predicted protein T10...    30   1.7  
At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,...    30   1.7  
At1g21680.1 68414.m02713 expressed protein similar to TolB prote...    28   6.8  

>At5g47560.1 68418.m05871 sodium/dicarboxylate cotransporter,
           putative similar to SWISS-PROT:Q13183 renal
           sodium/dicarboxylate cotransporter [Human]{Homo sapiens}
          Length = 540

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 299 CTPIPWSSVVCTGVP*TKRTAHRVPVFPPLLDKGCVKREMAPFWS 165
           C  +PW+ V+  G         R      +L KG V  E AP+W+
Sbjct: 385 CKKLPWNIVLLLGAGFAIADGVRTSGLAEVLSKGLVFLETAPYWA 429


>At4g32620.1 68417.m04644 expressed protein predicted protein
            T10M13.8, Arabidopsis thaliana
          Length = 1544

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 166  LQKGAISRFTHPLSSKGGKTGT 231
            LQ G+++RFTH +  KGGK  T
Sbjct: 1094 LQPGSVNRFTHAMMWKGGKDWT 1115


>At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase GI:7939617 from
           [Lycopersicon esculentum]
          Length = 887

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 333 GLALSRRWGLSVHPDTVEQRCLHRGAVNKEDCTPCSRFPT 214
           G  + R W +    D  ++ C +RGA N + CT     PT
Sbjct: 683 GQHIGRYWNIISQKDGCDRTCDYRGAYNSDKCTTNCGKPT 722


>At1g21680.1 68414.m02713 expressed protein similar to TolB protein
           precursor (SP:Q9ZDM5) {Rickettsia prowazekii}; ESTs
           gb|N96028, gb|F14286, gb|T20680, gb|F14443, gb|AA657300
           and gb|N65244 come from this gene
          Length = 706

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -1

Query: 300 VHPDTVEQRCLHRGAVNKEDCTPCSRFPTFAGQRV 196
           +HP+ VE +  +    + EDC   +++PT  G+++
Sbjct: 670 IHPNNVELQRRNDSRCSFEDCHWLNKYPTLKGRKI 704


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,435,441
Number of Sequences: 28952
Number of extensions: 368049
Number of successful extensions: 838
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)