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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0057
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13950.1 68414.m01639 eukaryotic translation initiation facto...   201   4e-52
At1g69410.1 68414.m07972 eukaryotic translation initiation facto...   194   5e-50
At1g26630.1 68414.m03243 eukaryotic translation initiation facto...   190   1e-48
At3g06450.1 68416.m00746 anion exchange family protein similar t...    31   0.93 
At1g56345.1 68414.m06477 pseudouridine synthase family protein l...    29   2.2  
At5g14230.1 68418.m01663 ankyrin repeat family protein contains ...    29   2.8  
At5g41460.1 68418.m05035 fringe-related protein strong similarit...    29   3.8  
At5g03140.1 68418.m00262 lectin protein kinase family protein co...    29   3.8  
At3g05830.1 68416.m00654 expressed protein                             29   3.8  
At3g53330.1 68416.m05884 plastocyanin-like domain-containing pro...    28   6.6  
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea...    28   6.6  
At3g12240.1 68416.m01527 serine carboxypeptidase S10 family prot...    28   6.6  
At3g06490.1 68416.m00753 myb family transcription factor (MYB108...    28   6.6  
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein...    28   6.6  
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-...    27   8.7  
At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative simila...    27   8.7  
At1g20860.1 68414.m02613 phosphate transporter family protein si...    27   8.7  

>At1g13950.1 68414.m01639 eukaryotic translation initiation factor
           5A-1 / eIF-5A 1 identical to SP|Q9XI91 Eukaryotic
           translation initiation factor 5A-1 (eIF-5A 1)
           {Arabidopsis thaliana}
          Length = 158

 Score =  201 bits (490), Expect = 4e-52
 Identities = 87/150 (58%), Positives = 117/150 (78%), Gaps = 1/150 (0%)
 Frame = +3

Query: 60  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 239
           E+ HFE+ D+GAS T+P Q   +RKNG++++K RPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4   EEHHFESSDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63

Query: 240 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD-LG 416
           IF  KK EDI PS+HN DVPHV R DYQL DIS+DGY++L+ DNG  ++DLK+P+ D L 
Sbjct: 64  IFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLL 123

Query: 417 TQLRTDFDSGKELLCTVLKSCGEECVIAVK 506
            Q+++ FD GK+L+ +V+ + GEE + A+K
Sbjct: 124 QQIKSGFDDGKDLVVSVMSAMGEEQINALK 153


>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
           5A, putative / eIF-5A, putative strong similarity to
           eukaryotic initiation factor 5A (2) (Nicotiana
           plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
           translation initiation factor 5A-1 (eIF-5A 1)
           {Lycopersicon esculentum}
          Length = 158

 Score =  194 bits (473), Expect = 5e-50
 Identities = 85/150 (56%), Positives = 115/150 (76%), Gaps = 1/150 (0%)
 Frame = +3

Query: 60  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 239
           ++ HFE+ D+GAS T+P Q   +RK G +++KGRPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4   DEHHFESSDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAID 63

Query: 240 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLG 416
           IF  KK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ DNG  ++DLK+P D  L 
Sbjct: 64  IFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALL 123

Query: 417 TQLRTDFDSGKELLCTVLKSCGEECVIAVK 506
           TQL+  F+ GK+++ +V+ + GEE + A+K
Sbjct: 124 TQLKNGFEEGKDIVVSVMSAMGEEQMCALK 153


>At1g26630.1 68414.m03243 eukaryotic translation initiation factor
           5A, putative / eIF-5A, putative strong similariy to
           SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1
           (eIF-5A 1) {Lycopersicon esculentum}
          Length = 159

 Score =  190 bits (462), Expect = 1e-48
 Identities = 83/150 (55%), Positives = 111/150 (74%), Gaps = 1/150 (0%)
 Frame = +3

Query: 60  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 239
           ++ HFE  +SGAS T+P     +RK G +++K RPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4   DEHHFEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63

Query: 240 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLG 416
           IF  KK EDI PS+HN DVPHV R DYQL DI++DG+++L+ D+G  ++DLK+P D  L 
Sbjct: 64  IFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLT 123

Query: 417 TQLRTDFDSGKELLCTVLKSCGEECVIAVK 506
            Q+R  FD GK+++ +V+ S GEE + AVK
Sbjct: 124 AQMRLGFDEGKDIVVSVMSSMGEEQICAVK 153


>At3g06450.1 68416.m00746 anion exchange family protein similar to
           putative Anion exchanger family members: GB:AAD39673,
           GB:AAD55295 [Arabidopsis thaliana]
          Length = 732

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 664 LRAPPLYYYSFFKLNLYTILC 602
           LR PP Y+Y  F L   TILC
Sbjct: 328 LRKPPAYHYDLFLLGFLTILC 348


>At1g56345.1 68414.m06477 pseudouridine synthase family protein low
           similarity to SP|P23851 Ribosomal large subunit
           pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
           synthase) (Uracil hydrolyase) {Escherichia coli};
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 322

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = -2

Query: 470 QHGAQQFLAAVEVSTQLCAEVTIRDFEVLTQ-VTVVSHQGQVAIIRDISQLVVFALHVGY 294
           +HGA +  AA++V   L     +RD E   + V+V S + +   + D++ ++V     G 
Sbjct: 176 KHGAWRVYAALDVGRVLPGGSFVRDMETTFEVVSVNSVKNESCELEDVNHVIVAE---GE 232

Query: 293 VHVVCGGTD 267
             + CGG D
Sbjct: 233 RELSCGGDD 241


>At5g14230.1 68418.m01663 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 591

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +3

Query: 390 LKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEEC 491
           L IPDGD  T L      G   +C  L SCG  C
Sbjct: 412 LDIPDGDGYTPLMLAAREGHGHMCEYLISCGANC 445


>At5g41460.1 68418.m05035 fringe-related protein strong similarity
           to unknown protein (pir||T13026) similarity to predicted
           proteins + similar to hypothetical protein GB:AAC23643
           [Arabidopsis thaliana] + weak similarity to Fringe
           [Schistocerca gregaria](GI:6573138);Fringe encodes an
           extracellular protein that regulates Notch signalling.
          Length = 524

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 25  VVKFKTQQWVTSKTHTSRPETPGPQPPSP 111
           ++ F T Q    K++ S P +P P PP P
Sbjct: 80  LILFHTNQTAVIKSYASPPPSPPPPPPPP 108


>At5g03140.1 68418.m00262 lectin protein kinase family protein
           contains Pfam domains, PF00138: Legume lectins alpha
           domain, PF00139: Legume lectins beta domain and PF00069:
           Protein kinase domain
          Length = 711

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 160 RPFSITKPFLRRAEHCMGKVAEAPESPVSKCVSSMS 53
           +P  +T+P +R     +   A+ PE P++K  SSMS
Sbjct: 631 QPDPVTRPTMRSVVQILVGEADVPEVPIAKPSSSMS 666


>At3g05830.1 68416.m00654 expressed protein
          Length = 336

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 24/82 (29%), Positives = 39/82 (47%)
 Frame = +3

Query: 213 AKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDL 392
           AK  + G+D    K  ED+ P         V+ +D ++T + D+  + LM  +G  +   
Sbjct: 186 AKAGIGGMDSELQKLLEDVSPMKFERMNRLVEVKDEEITKLKDE--IRLM--SGQWKHKT 241

Query: 393 KIPDGDLGTQLRTDFDSGKELL 458
           K  +  L  Q RTD D  K++L
Sbjct: 242 KELESQLEKQRRTDQDLKKKVL 263


>At3g53330.1 68416.m05884 plastocyanin-like domain-containing
           protein similar to mavicyanin SP:P80728 from [Cucurbita
           pepo]
          Length = 310

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/18 (72%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +1

Query: 58  SKTHT-SRPETPGPQPPS 108
           SKTH  SRP TP P PPS
Sbjct: 127 SKTHERSRPITPSPPPPS 144


>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           GTP-binding protein beta chain homolog, Nicotiana
           tabacum, PIR:T16970
          Length = 438

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 518 SCVCFDGDDALLTAGFQHGA 459
           +C+ F GDD+LL +G Q G+
Sbjct: 124 TCLVFSGDDSLLVSGSQDGS 143


>At3g12240.1 68416.m01527 serine carboxypeptidase S10 family protein
           contains Pfam profile: PF00450 serine carboxypeptidase;
           similar to serine carboxypeptidase I precursor
           (SP:P37890) [Oryza sativa]
          Length = 436

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
 Frame = -2

Query: 377 VTVVSHQGQVAIIRDISQL---VVFALHVGYVHVVCGGTD-IFILFTIEDINPNQVNFSV 210
           + ++ H    +IIR +      + F L  GY+ V     D +F  F   + NP +    V
Sbjct: 16  LVLIQHADSSSIIRYLPGFEGPLPFELETGYIGVGQKEEDQLFYYFIKSENNPEEDPLLV 75

Query: 209 AVLSGFGCGHFNNLAW 162
            +  G GC  F+ L +
Sbjct: 76  WLTGGPGCSSFSGLVY 91


>At3g06490.1 68416.m00753 myb family transcription factor (MYB108)
           identical to transcription factor MYB108 GI:15375290
           from [Arabidopsis thaliana]
          Length = 323

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 163 HARLLKCPHPKPESTATLKFTWLGLISSMVKSMKIS--VPPHTTWTYPT*SAKTTN 324
           HA+ LKC     +   T+K+ W+  +   ++S   S      TT T  T SA T++
Sbjct: 122 HAKQLKCDVNSQQFKDTMKYLWMPRLVERIQSASASSAAAATTTTTTTTGSAGTSS 177


>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
           contains INTERPRO domain, IPR001878: Zn-finger CCHC type
          Length = 353

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
 Frame = +1

Query: 61  KTHTSRPETPGPQPPS---PCNVRPCVKTVSLC*RVVHARLLKCP 186
           KT T       P PP    PCN  PC    S   +  + R   CP
Sbjct: 22  KTTTKPTAAAAPSPPDIHCPCNAGPCNTVTSKTEKNPNRRFYTCP 66


>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
           RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain
          Length = 1226

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 303 VKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDL-GTQLRTDFDSGKE 452
           V+R+  +++      Y  L ADN    +   +  G + GT+++T+FDS +E
Sbjct: 350 VRRDGSKMSLAQSKKYSQLNADNAQWEDRQLLRSGAVRGTEVQTEFDSEEE 400


>At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative similar to
            SP|P35207 Antiviral protein SKI2 {Saccharomyces
            cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
            box helicase, PF00271: Helicase conserved C-terminal
            domain
          Length = 1347

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
 Frame = +3

Query: 333  ISDDGYLTLMADNG--DLREDLKIPDGDLGTQLR----TDFDSGKELLCTV 467
            +SD+  L + A  G  D+ +++   D DL  Q++     + +SG+EL+CTV
Sbjct: 1141 MSDEALLQMPAFQGRIDVLKNIGCIDDDLVVQIKGRVACEMNSGEELICTV 1191


>At1g20860.1 68414.m02613 phosphate transporter family protein
           similar to phosphate transporter [Catharanthus roseus]
           GI:2208908, inorganic phosphate transporter 1 [Solanum
           tuberosum] GI:1420871; contains Pfam profile PF00083:
           major facilitator superfamily protein
          Length = 534

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +1

Query: 37  KTQQWVTSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVHAR 171
           K  Q V S++H S   T  P PP P    P  K  S C   +H R
Sbjct: 243 KDMQRVMSRSHISDEATTDPPPPPP---PPSYKLFSRCFFRLHGR 284


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,050,245
Number of Sequences: 28952
Number of extensions: 330601
Number of successful extensions: 1075
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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