Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0056
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12770.1 68416.m01594 pentatricopeptide (PPR) repeat-containi...    32   0.42 
At4g01750.1 68417.m00227 expressed protein T15B16.8                    29   2.2  
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ...    29   2.2  
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ...    29   2.2  
At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00...    29   2.2  
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi...    29   3.9  
At4g01770.1 68417.m00231 hypothetical protein similar to T15B16.9      29   3.9  
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila...    29   3.9  
At1g60460.1 68414.m06807 hypothetical protein                          29   3.9  
At5g02210.1 68418.m00142 expressed protein ; expression supporte...    28   5.1  
At1g42700.1 68414.m04928 hypothetical protein                          28   5.1  
At5g58920.1 68418.m07381 expressed protein                             27   9.0  
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex...    27   9.0  
At4g26120.1 68417.m03760 ankyrin repeat family protein / BTB/POZ...    27   9.0  
At3g62060.1 68416.m06973 pectinacetylesterase family protein sim...    27   9.0  
At3g57050.3 68416.m06352 cystathionine beta-lyase, chloroplast /...    27   9.0  
At3g57050.2 68416.m06351 cystathionine beta-lyase, chloroplast /...    27   9.0  
At3g57050.1 68416.m06350 cystathionine beta-lyase, chloroplast /...    27   9.0  

>At3g12770.1 68416.m01594 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 719

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 35/104 (33%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
 Frame = -1

Query: 486 IESAHLVFTSLMVVDVFVHGYMD-GIGL----RDG-HLYFFFDLNGIRLFD--FIG---- 343
           +E A LVF   +  DV V   M  G GL    R+   LY   +  G+   D  F+G    
Sbjct: 374 VEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMA 433

Query: 342 --HWFFDRVRYWFFNNLVDNLINRYMDRLLHCDVDRVGLRYGHL 217
             H    R  +WFFN + D+ IN        C +D +G R GHL
Sbjct: 434 CNHSGMVREGWWFFNRMADHKINPQQQHYA-CVIDLLG-RAGHL 475


>At4g01750.1 68417.m00227 expressed protein T15B16.8
          Length = 367

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 204 PAVREGAHTSTLPGPRHSGATYPCTCL 284
           P ++   H+  LP P  +G TY C+C+
Sbjct: 222 PQIKPLNHSHDLPAPDQNGETYICSCM 248


>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
           profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
           domain;
          Length = 299

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 175 PIPHPVAVSVPQYVKVPIPQPYPVHVTVEQP 267
           P P P  V+  + V  PIP+P P  ++   P
Sbjct: 130 PTPTPAPVAATETVTTPIPEPVPATISSSTP 160


>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
           profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
           domain;
          Length = 419

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 175 PIPHPVAVSVPQYVKVPIPQPYPVHVTVEQP 267
           P P P  V+  + V  PIP+P P  ++   P
Sbjct: 130 PTPTPAPVAATETVTTPIPEPVPATISSSTP 160


>At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 435

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = +1

Query: 145 HVTVVKKIGVPIPHPVAVSVPQYVKVPIPQP 237
           H+ +   + +P+P P+A+++P  + +P+P P
Sbjct: 372 HMHMPMPMAMPMPMPIAMAMPMPMPMPMPMP 402


>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
           to proline-rich protein [Arabidopsis thaliana]
           gi|6782442|gb|AAF28388; contains proline-rich extensin
           domains, INTERPRO:IPR002965
          Length = 448

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +1

Query: 127 EHTKPYHVTVVKKIGVPIPHPVAVSVPQYV--KVPIPQPYPVH 249
           EH   Y   +VKK   P P PV +  P  V  K P P P PV+
Sbjct: 362 EHPPIYIPPIVKK---PCPPPVPIYKPPVVIPKKPCPPPVPVY 401



 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 175 PIPHPVAVSVPQYVKVPIPQPYPVHVTVEQPI 270
           P P P  + +P ++K P P  Y   V V  P+
Sbjct: 165 PFPLPPPLELPPFLKKPCPPKYSPPVEVPPPV 196


>At4g01770.1 68417.m00231 hypothetical protein similar to T15B16.9
          Length = 361

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 204 PAVREGAHTSTLPGPRHSGATYPCTCL 284
           P ++   H+  LP P  +G TY C+C+
Sbjct: 216 PQIKPLNHSHDLPHPDRNGETYICSCM 242


>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
           to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
           {Mus musculus}
          Length = 865

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -2

Query: 155 TVTWYGFVCSVCVWPSGSHSSEGRALASATKRRTTVVLKAIMLP 24
           T T  G  CS+C  P+  HS   + + +  +   T+VL  +  P
Sbjct: 711 TKTGAGMPCSLCPHPTCQHSVRNQGVCACPECEGTLVLDPVSFP 754


>At1g60460.1 68414.m06807 hypothetical protein
          Length = 356

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 254 QWSNLSMYLFIRLSTKLLKNQYRTRSKN 337
           +W N   Y+ I+++     NQY TR KN
Sbjct: 197 EWDNFPSYVQIQIALHWYHNQYPTRQKN 224


>At5g02210.1 68418.m00142 expressed protein ; expression supported
           by MPSS
          Length = 161

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +2

Query: 290 LSTKLLKNQYRTRSKNQCPMKSK 358
           +S+++LK +YR++  NQ PM+ K
Sbjct: 4   ISSRILKPEYRSQYNNQIPMQEK 26


>At1g42700.1 68414.m04928 hypothetical protein
          Length = 149

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +2

Query: 287 RLSTKLLKNQYRTRSKNQCPMKSKSLIPLRSKKK*---RCPSLSPIPSMYPCTNTSTTI 454
           +L+ K+++N   T   N  P  +     +  +++    RC  L P PS +    T+TT+
Sbjct: 22  KLAKKIIQNAGDTNGNNSTPNSNDDFAQVFGRERPGRVRCVGLGPTPSSFIQNRTTTTL 80


>At5g58920.1 68418.m07381 expressed protein
          Length = 162

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 567 GVSSKKSNKFEIRNYLRNTGIQNRDFFVLVLVARTAICKYKI 692
           G+ + KS   +  NYL+  G+   D F    V +  +C Y I
Sbjct: 12  GIEALKS--MDANNYLKKVGLGRDDMFFWKQVGKALLCTYTI 51


>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 699

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 20/55 (36%), Positives = 26/55 (47%)
 Frame = +1

Query: 85  RPSEEWEPEGHTHTEHTKPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIPQPYPVH 249
           RP ++ +P   +  +   PY  + V K   P P PV  S P  V  P P P PVH
Sbjct: 489 RPVQKPQPPKES-PQPDDPYDQSPVTKRRSPPPAPVN-SPPPPVYSPPPPPPPVH 541


>At4g26120.1 68417.m03760 ankyrin repeat family protein / BTB/POZ
           domain-containing protein contains Pfam domain, PF00023:
           Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
          Length = 600

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 162 LHHGHMVRLRVFCVRVAFGLPFFRRPS 82
           +H  H+ RLR  C  V  G  +F+R S
Sbjct: 486 IHEKHLSRLRALCKTVELGKRYFKRCS 512


>At3g62060.1 68416.m06973 pectinacetylesterase family protein
           similar to pectinacetylesterase precursor GI:1431629
           from [Vigna radiata]; contains Pfam profile: PF03283
           pectinacetylesterase
          Length = 419

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 375 LNGIRLFDFIGHWFFDRVR 319
           LNG R+ + +G W+FDR +
Sbjct: 380 LNGKRVAESVGDWYFDRAK 398


>At3g57050.3 68416.m06352 cystathionine beta-lyase, chloroplast /
           beta-cystathionase / cysteine lyase (CBL) identical to
           SP|P53780 Cystathionine beta-lyase, chloroplast
           precursor (EC 4.4.1.8) (CBL) (Beta-cystathionase)
           (Cysteine lyase) {Arabidopsis thaliana}
          Length = 378

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 247 GPGRVEVWAPSRTAGPTQPPDGESELRSSSPRSHGTASCVLCACGLRAPILQK 89
           GP    VW  S    PT P    S++R  S  +H   + VL    + +P+L +
Sbjct: 215 GPQTKLVWLES----PTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSR 263


>At3g57050.2 68416.m06351 cystathionine beta-lyase, chloroplast /
           beta-cystathionase / cysteine lyase (CBL) identical to
           SP|P53780 Cystathionine beta-lyase, chloroplast
           precursor (EC 4.4.1.8) (CBL) (Beta-cystathionase)
           (Cysteine lyase) {Arabidopsis thaliana}
          Length = 449

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 247 GPGRVEVWAPSRTAGPTQPPDGESELRSSSPRSHGTASCVLCACGLRAPILQK 89
           GP    VW  S    PT P    S++R  S  +H   + VL    + +P+L +
Sbjct: 200 GPQTKLVWLES----PTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSR 248


>At3g57050.1 68416.m06350 cystathionine beta-lyase, chloroplast /
           beta-cystathionase / cysteine lyase (CBL) identical to
           SP|P53780 Cystathionine beta-lyase, chloroplast
           precursor (EC 4.4.1.8) (CBL) (Beta-cystathionase)
           (Cysteine lyase) {Arabidopsis thaliana}
          Length = 464

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 247 GPGRVEVWAPSRTAGPTQPPDGESELRSSSPRSHGTASCVLCACGLRAPILQK 89
           GP    VW  S    PT P    S++R  S  +H   + VL    + +P+L +
Sbjct: 215 GPQTKLVWLES----PTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSR 263


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,292,547
Number of Sequences: 28952
Number of extensions: 319818
Number of successful extensions: 975
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)