Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0039
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g25540.1 68414.m03171 phytochrome and flowering time regulato...    31   0.96 
At2g47430.1 68415.m05920 cytokinin-responsive histidine kinase (...    30   1.7  
At1g74850.1 68414.m08674 pentatricopeptide (PPR) repeat-containi...    29   2.9  
At5g47850.1 68418.m05912 protein kinase, putative contains simil...    29   3.9  
At5g18320.1 68418.m02156 armadillo/beta-catenin repeat family pr...    28   5.1  
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p...    27   8.9  

>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
           protein (PFT1) PMID: 12815435
          Length = 836

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 17/86 (19%), Positives = 41/86 (47%)
 Frame = -3

Query: 432 QSMLRKMVIHERLWTSKKILRKQLEKWSWSQPEMRHKRTMVQRRTNMLGQ*HMSMLVQQH 253
           Q   ++  +H++    ++I ++Q ++    Q +M   +   Q+      Q H    +Q H
Sbjct: 681 QQQQQQQQLHQQQQQQQQIQQQQQQQQHLQQQQMPQLQQQQQQHQQQQQQQHQLSQLQHH 740

Query: 252 KRRQEQQWS**RLEQHRRQRCGHRER 175
           +++Q+QQ    + +QH+  +  H  +
Sbjct: 741 QQQQQQQQQ--QQQQHQLTQLQHHHQ 764


>At2g47430.1 68415.m05920 cytokinin-responsive histidine kinase
           (CKI1) identical to GB:D87545
          Length = 1122

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -1

Query: 128 FSYHSRSRDSVAVSQGSSSEETTSADYAYSAQSNDQL 18
           FSY + S  SVAV   SSS  ++  DY +  Q+ DQL
Sbjct: 128 FSYIAESNTSVAVFANSSS-NSSRGDYTWYTQTVDQL 163


>At1g74850.1 68414.m08674 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 862

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 72  RGDHQRGLRLQRTEQRSAWC 13
           RGD QR LRL +  QR  WC
Sbjct: 118 RGDWQRSLRLFKYMQRQIWC 137


>At5g47850.1 68418.m05912 protein kinase, putative contains
           similarity to cytokinin-regulated kinase 1 [Nicotiana
           tabacum] gi|10998537|gb|AAG25966; contains protein
           kinase domain, Pfam:PF00069
          Length = 751

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 350 LGHNRRCGISVRWCSGVRICWASS 279
           +G +R CG  VRW +G  +CW ++
Sbjct: 231 VGEDRGCG--VRWSNGTVVCWGNN 252


>At5g18320.1 68418.m02156 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 458

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = -3

Query: 465 RSMRRWLEHREQSMLRKMVIHERLWTSKKILRKQLEKW 352
           R +  WL+H       K V+  RLW    ++   + +W
Sbjct: 100 RYITEWLKHERTCPKTKQVLSHRLWIPNHLISDLITQW 137


>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
           protease homolog 2 SP:P93655
          Length = 924

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/29 (31%), Positives = 22/29 (75%)
 Frame = -3

Query: 444 EHREQSMLRKMVIHERLWTSKKILRKQLE 358
           +H+ Q +L ++ +H+RL  + ++++KQ+E
Sbjct: 298 KHKNQGVLTELDVHKRLELTLELVKKQVE 326


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,804,887
Number of Sequences: 28952
Number of extensions: 205838
Number of successful extensions: 642
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)