Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0021
         (416 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ...   100   3e-22
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)            99   6e-22
At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ...   100   8e-22
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ...    77   4e-15
At3g56790.1 68416.m06316 RNA splicing factor-related contains we...    28   2.9  
At1g34590.1 68414.m04299 hypothetical protein                          28   2.9  
At4g27595.1 68417.m03964 protein transport protein-related low s...    27   5.1  
At5g05440.1 68418.m00586 expressed protein low similarity to cyt...    26   8.9  
At4g35940.1 68417.m05113 expressed protein                             26   8.9  

>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 112

 Score =  100 bits (240), Expect = 3e-22
 Identities = 54/100 (54%), Positives = 67/100 (67%)
 Frame = +3

Query: 33  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 212
           VGL KGH  T+          + +  RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61

Query: 213 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 332
           ELLKV KDKRALK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 62  ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101


>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
          Length = 113

 Score =   99 bits (238), Expect = 6e-22
 Identities = 55/100 (55%), Positives = 66/100 (66%)
 Frame = +3

Query: 33  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 212
           VGL KGH  T+          + +  RP   KG  +K + F+R L+REV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRIT 61

Query: 213 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 332
           ELLKV KDKRALK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 62  ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101


>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
           ribosomal protein L36, Arabidopsis thaliana,
           EMBL:AC004684
          Length = 108

 Score = 99.5 bits (237), Expect = 8e-22
 Identities = 55/100 (55%), Positives = 66/100 (66%)
 Frame = +3

Query: 33  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 212
           VGL KGH  TK          +    RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 8   VGLNKGHVVTK----------REQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 57

Query: 213 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 332
           ELLKV KDKRALK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 58  ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 97


>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 103

 Score = 77.4 bits (182), Expect = 4e-15
 Identities = 47/100 (47%), Positives = 61/100 (61%)
 Frame = +3

Query: 33  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 212
           VGL KGH  T+          + +  RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61

Query: 213 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 332
           ELLKV+         KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 62  ELLKVA---------KRKLGTHKRAKRKREEMSSVLRKMR 92


>At3g56790.1 68416.m06316 RNA splicing factor-related contains weak
           similarity to U4/U6-associated RNA splicing factor [Homo
           sapiens] gi|2853287|gb|AAC09069
          Length = 206

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
 Frame = +3

Query: 24  EIAVGLRKGHKTTKISAGRKGITDKAIRI--RPARLKGLQTKHSKFVRDLVREVVGHAQ- 194
           E+A+     HK TK    R  +  + I        L  L   ++K  +D+ + ++   Q 
Sbjct: 88  ELAIDTAVAHKQTKGFFLRVDVLGREIDEYGHVINLSTLMVNNNKHKKDVFQNILKPPQP 147

Query: 195 ------YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLA 323
                  EK+   L +V+K+K   K +++ L    ++K K   L  VLA
Sbjct: 148 FKLTKKEEKKLQTLRRVAKEKEKQKMIRQALFEPQKSKVKLSNLMKVLA 196


>At1g34590.1 68414.m04299 hypothetical protein
          Length = 820

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 3   EIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 122
           ++ AP  E A     GH++ +  A + G+TD+A  + PA+
Sbjct: 772 DLKAPALESAPLSPGGHRSVESVADKAGVTDQAGSLLPAK 811


>At4g27595.1 68417.m03964 protein transport protein-related low
            similarity to SP|P25386 Intracellular protein transport
            protein USO1 {Saccharomyces cerevisiae}
          Length = 1212

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
 Frame = +3

Query: 81   KGITDKAIRIRPA----RLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 248
            KG  ++ +++R A    R++ L +K  + + D   + V H  YE +A E   + K +   
Sbjct: 1001 KGNENQELKVREASAAKRIEEL-SKMKESLLDKELQTVIHDNYELKAREASALKKIEELS 1059

Query: 249  KFLKRRLGTHIRAKRKREELSN 314
            K L+    TH     K EE++N
Sbjct: 1060 KLLEEASSTH----EKGEEITN 1077


>At5g05440.1 68418.m00586 expressed protein low similarity to
           cytokinin-specific binding protein [Vigna radiata]
           GI:4190976
          Length = 203

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 329 HLSEHVAKFFTLPLGADVCAQSSLQELQS 243
           H+ EHVA   T  +G D C  S +Q + +
Sbjct: 40  HVPEHVAMHHTHDVGPDQCCSSVVQMIHA 68


>At4g35940.1 68417.m05113 expressed protein
          Length = 451

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
 Frame = +3

Query: 84  GITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKR 263
           GI D+A+ +  + +KG++ K  K  R   R      + +K+  +  K  K+K+  +   +
Sbjct: 16  GIRDEAVIV--SSIKGVEEKAKKEQRRKDRRSDKKDKKDKKERKEKKEKKEKKRKEREGK 73

Query: 264 RLGTHIRA-KRKREE 305
            +G+  R+ KR+R+E
Sbjct: 74  EVGSEKRSHKRRRKE 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,653,722
Number of Sequences: 28952
Number of extensions: 137054
Number of successful extensions: 375
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)