Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0157
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22310.1 68418.m02603 expressed protein                             29   2.5  
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH...    29   2.5  
At5g07030.1 68418.m00796 aspartyl protease family protein contai...    29   3.3  
At5g15410.2 68418.m01803 cyclic nucleotide-regulated ion channel...    28   4.3  
At5g15410.1 68418.m01804 cyclic nucleotide-regulated ion channel...    28   4.3  
At1g61180.1 68414.m06894 disease resistance protein (CC-NBS-LRR ...    28   5.7  
At1g78610.1 68414.m09161 mechanosensitive ion channel domain-con...    27   10.0 
At1g12580.1 68414.m01461 protein kinase family protein contains ...    27   10.0 

>At5g22310.1 68418.m02603 expressed protein
          Length = 481

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 227 RALLAKLEEETVVSRLMRRTPRSLPSTVGRAPTHH*YPSLPPQAQVMRSKRAQ 385
           R L+  L+EE +V R +RR    +   +GR  T         + ++ R KRA+
Sbjct: 243 RRLIESLQEEAMVERKLRRRTEKMNRRLGRELTEAKETERKMKEEMKREKRAK 295


>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
           (MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
           repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
           thaliana}
          Length = 1324

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 155 EKSPELNPNADCRIPTSETIPTPD--RALLAKLEEETVVSRLMRRTPRSLPSTVG 313
           +K+P+LNPN    +P     P PD    + +K ++  +V       P+S+  T G
Sbjct: 67  KKTPKLNPNPSSNLPARSPSPGPDTPSPVQSKFKKPLLVIGQTPSPPQSVVITYG 121


>At5g07030.1 68418.m00796 aspartyl protease family protein contains
           Pfam profile:PF00026 eukaryotic aspartyl protease
          Length = 439

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +3

Query: 423 LGSPRQQLGIGMETSKPMGPRPCS--TGCPTH 512
           +G+P Q L + M+TS  +   PCS   GCP++
Sbjct: 105 IGTPAQPLLLAMDTSSDVAWIPCSGCVGCPSN 136


>At5g15410.2 68418.m01803 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC2) identical to
           cyclic nucleotide-gated cation channel GI:3894399 from
           [Arabidopsis thaliana]
          Length = 593

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = +3

Query: 276 CEERLAHYRPQSEELRHITDIPRFR---HKLKS*GRNAPNSWD*WRRGSLEPLGSPRQQL 446
           C E +  +   SE+LR+ITD  R++    +LK   R   ++W  W   +++     R++ 
Sbjct: 491 CLENIEAFSLGSEDLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQMAWRRRRKR 550

Query: 447 GIGMETSKPMGP 482
             G      M P
Sbjct: 551 TRGENIGGSMSP 562


>At5g15410.1 68418.m01804 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC2) identical to
           cyclic nucleotide-gated cation channel GI:3894399 from
           [Arabidopsis thaliana]
          Length = 726

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = +3

Query: 276 CEERLAHYRPQSEELRHITDIPRFR---HKLKS*GRNAPNSWD*WRRGSLEPLGSPRQQL 446
           C E +  +   SE+LR+ITD  R++    +LK   R   ++W  W   +++     R++ 
Sbjct: 624 CLENIEAFSLGSEDLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQMAWRRRRKR 683

Query: 447 GIGMETSKPMGP 482
             G      M P
Sbjct: 684 TRGENIGGSMSP 695


>At1g61180.1 68414.m06894 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 889

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 367 EVETRPTPGTNGEED-LWSLWGRLVSN 444
           EVE RPT  T G+ED L   W RL+ +
Sbjct: 144 EVEERPTQPTIGQEDMLEKAWNRLMED 170


>At1g78610.1 68414.m09161 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 856

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 338 PSLPPQAQVMRSKRAQLLGLMEKRIFGAS 424
           P LPPQ   M+S R    G M+   FG S
Sbjct: 183 PQLPPQTADMKSGRIPKSGQMKSGFFGKS 211


>At1g12580.1 68414.m01461 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains similarity
           to calcium-dependent protein kinase GI:5162877 from
           [Marchantia polymorpha]
          Length = 522

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +1

Query: 133 NDRSGFN*KISGAQSKRRLPNPDK*NYPDARPGASR---QAGGRNRRIEADAKNASLTTV 303
           ND +  + K+  +  KR LP+PD  +  + R  A     +AGG++         + ++ +
Sbjct: 416 NDITEIDGKVRDSSPKRLLPSPDSSSQLERRDEAGENQTEAGGKSETRRERGNWSRMSGL 475

Query: 304 HSRK 315
           HS++
Sbjct: 476 HSKR 479


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,464,923
Number of Sequences: 28952
Number of extensions: 287101
Number of successful extensions: 747
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)