Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0149
         (719 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c...    30   1.8  
At4g29280.1 68417.m04186 expressed protein ; expression supporte...    29   3.1  
At3g32030.1 68416.m04070 terpene synthase/cyclase family protein...    29   3.1  
At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing pro...    29   4.1  
At4g20730.1 68417.m03013 filament protein-related similar to Cyt...    29   4.1  
At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta...    28   7.2  
At5g07420.1 68418.m00849 pectinesterase family protein contains ...    27   9.5  

>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
           contains Pfam PF01422: NF-X1 type zinc finger; similar
           to transcriptional repressor NF-X1 (SP:Q12986) [Homo
           sapiens]; similar to EST gb|T21002
          Length = 1188

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = -1

Query: 320 GLSLKSCRHDFVTV-ESQTRAGDKSLRSFATVGCVECLAVNSSVFCNFGGLSMNGSWIFC 144
           G     CRH    +        D       T+ C  C  + ++V C+ GG S NGS ++C
Sbjct: 754 GAPRTDCRHTCAALCHPSAPCPDLRCEFSVTITC-SCGRITATVPCDAGGRSANGSNVYC 812


>At4g29280.1 68417.m04186 expressed protein ; expression supported
           by MPSS
          Length = 77

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 146 CMCEVYPGGVCNPSFCVCV*YRLKNGAG 63
           C   ++PG  C+PS CV   Y   NG G
Sbjct: 31  CTIIIHPGSPCDPSDCVQYCYAEYNGVG 58


>At3g32030.1 68416.m04070 terpene synthase/cyclase family protein
           contains Pfam profile: PF01397 terpene synthase family
          Length = 604

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -1

Query: 380 LNDKVIYLQNSNKNKLFELSGLSLKSCRHDFVTVESQTRA 261
           L+   ++L+ S    LF    LSLK  +HDFV V++ T++
Sbjct: 16  LHQAPLFLKTSQS--LFPRPSLSLKPMKHDFVCVKATTKS 53


>At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing
           protein similar to meiotic asynaptic mutant 1
           [Arabidopsis thaliana] GI:7939627, aysnaptic 1 [Brassica
           oleracea var. alboglabra] GI:23506946; contains Pfam
           profile PF02301: HORMA domain
          Length = 1399

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +1

Query: 28  SFFNRCHIWFDTPA---PFFNRYHTQTQKL 108
           ++F +CH+WF  P+    F NR H    +L
Sbjct: 760 AYFRQCHLWFPIPSLIISFLNRRHMAFSQL 789


>At4g20730.1 68417.m03013 filament protein-related similar to
           Cytadherence high molecular weight protein 2 (SP:P47460)
              [Mycoplasma genitalium]; similar to YEAST NUF1
           protein (Spindle poly body spacer protein SPC110)
           (SP:P32380) {Saccharomyces cerevisiae}; also
           SP|Q9UKX2|MYH2_HUMAN Myosin heavy chain, skeletal
           muscle, SP|P31732|OV71_ONCVO Muscle cell intermediate
           filament protein SP|P12882|MYH1_HUMAN Myosin heavy
           chain, skeletal muscle,. SP|Q17107|AV71_ACAVI Muscle
           cell intermediate filament protein
          Length = 800

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +1

Query: 28  SFFNRCHIWFDTPA---PFFNRYHTQTQKL 108
           ++F +CH+WF  P+    F NR H    +L
Sbjct: 169 AYFRQCHLWFPIPSLIISFLNRRHMAFSQL 198


>At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains
           weak similarity to 2-phosphoglycerate kinase (GI:467751)
           [Methanothermus fervidus]
          Length = 738

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 60  HAGAVLQPVSHADAEARVTDAARVDLAHTEDPGAVH*QAAEVTEHATINS 209
           HAG  L PV+ A+++AR   A ++D    E   A     A+ T+   + S
Sbjct: 229 HAGEYLDPVAVAESKARRRRAKKMDSIEDEKAKASEGGKAKNTQQTDVGS 278


>At5g07420.1 68418.m00849 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 361

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 516 LIALQHIPLSPAGVIAKRPAPIALSNSCAPEWRMANCKP 632
           L+AL     SP  V+A    PI    +  P+W MAN KP
Sbjct: 8   LVALLVFFASPV-VLADDITPIPADRAQIPQWFMANVKP 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,437,989
Number of Sequences: 28952
Number of extensions: 288709
Number of successful extensions: 675
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)