Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0145
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08350.1 68414.m00924 endomembrane protein 70 family protein ...    29   2.1  
At3g16690.1 68416.m02132 nodulin MtN3 family protein contains Pf...    29   2.7  

>At1g08350.1 68414.m00924 endomembrane protein 70 family protein
           KNOLLE; similar to putative endosomal protein
           GB:AAD20090 GI:4406780 from [Arabidopsis thaliana]
          Length = 508

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 239 GYARVRFYLSKTSRFCWPTVLALISINFYTKPLFLR 346
           G+ ++ FYL  T+  C+   L L +I+F    +F+R
Sbjct: 464 GFLQLSFYLGYTALLCYALFLVLGTISFLASLMFIR 499


>At3g16690.1 68416.m02132 nodulin MtN3 family protein contains Pfam
           PF03083 MtN3/saliva family
          Length = 230

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = -3

Query: 616 VSALLRVVTTLVQFLQPLPPMLSAFGLLNGGTAGIYASLTMSVHLV 479
           +SA+  VVTT  + +Q +P  LS F  LNG   G+YA L   + L+
Sbjct: 146 LSAIKTVVTT--RSVQFMPFWLSFFLFLNGAIWGVYALLLHDMFLL 189


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,816,278
Number of Sequences: 28952
Number of extensions: 312898
Number of successful extensions: 692
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)