Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0139
         (381 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    33   0.085
At1g49010.1 68414.m05495 myb family transcription factor contain...    29   1.4  
At5g46340.1 68418.m05704 O-acetyltransferase-related similar to ...    27   4.2  
At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT...    26   7.4  
At5g15280.1 68418.m01790 pentatricopeptide (PPR) repeat-containi...    26   9.7  
At3g26750.1 68416.m03346 expressed protein                             26   9.7  
At1g51170.1 68414.m05754 protein kinase family protein                 26   9.7  

>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 32.7 bits (71), Expect = 0.085
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 355 SPARRDAHMPAAPQPSPKPQRNVNHS 278
           SP+   +H PA P PSPK    V+HS
Sbjct: 195 SPSHATSHSPATPSPSPKSPSPVSHS 220


>At1g49010.1 68414.m05495 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 314

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 334 HMPAAPQPSPKPQRNVNH 281
           H PA PQP P+PQ   +H
Sbjct: 220 HRPAQPQPQPQPQPQQHH 237


>At5g46340.1 68418.m05704 O-acetyltransferase-related similar to
           O-acetyltransferase [Homo sapiens] GI:17016934
          Length = 540

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 257 CLRSFTIGMVHVSLWFRAWLGR 322
           CLR+FT  +  VSL   AWLG+
Sbjct: 421 CLRNFTHQLRSVSLTLFAWLGK 442


>At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT3)
           identical to homeobox protein knotted-1 like 3 (KNAT3)
           SP:P48000 from [Arabidopsis thaliana]
          Length = 431

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 340 DAHMPAAPQPSPKPQRNVNH 281
           D H P  PQP P P +   H
Sbjct: 19  DQHQPPPPQPPPPPPQQQQH 38


>At5g15280.1 68418.m01790 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1227

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 72  IIIGTCCY-ADAIRSVLAQSQLILN*YRFEV 161
           I+IG CCY  D  R+VL  S+++   Y+ +V
Sbjct: 363 ILIGWCCYEGDIKRAVLYLSEIMSKGYKPDV 393


>At3g26750.1 68416.m03346 expressed protein
          Length = 526

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 319 ALPACGRHGAPDSNASYEL 375
           +LP C  H +PDSN S +L
Sbjct: 298 SLPGCCVHDSPDSNESVQL 316


>At1g51170.1 68414.m05754 protein kinase family protein
          Length = 404

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 352 PARRDAHMPAAPQPSPKPQRNVNHS 278
           P R + +  + P+P P P+ N++H+
Sbjct: 181 PTRPEFYHLSDPEPDPNPESNLSHN 205


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,770,499
Number of Sequences: 28952
Number of extensions: 113783
Number of successful extensions: 302
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)