Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0136
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62970.1 68414.m07110 DNAJ heat shock N-terminal domain-conta...    29   2.4  
At5g54110.1 68418.m06737 vesicle-associated membrane family prot...    28   5.5  
At3g52250.1 68416.m05742 myb family transcription factor contain...    28   5.5  
At3g26050.1 68416.m03244 expressed protein                             28   7.3  
At2g04600.1 68415.m00468 hypothetical protein                          28   7.3  
At1g53935.1 68414.m06141 hypothetical protein                          28   7.3  
At1g56440.1 68414.m06491 serine/threonine protein phosphatase-re...    27   9.6  

>At1g62970.1 68414.m07110 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226: DnaJ domain
          Length = 797

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 305 ITTRPKTEKPVQKTRTKLTSKPLSVSVIYDYPETVYNTKPPASS 436
           ++  P T KP+  ++   TSKPL VS      ++   ++PPA+S
Sbjct: 526 VSQPPNTSKPMPVSQPPTTSKPLPVSQPPPTFQSTCPSQPPAAS 569



 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +2

Query: 305 ITTRPKTEKPVQKTRTKLTSKPLSVSVIYDYPETVYNTKPPASSEKPFIVYVPQKNPN 478
           ++   +  KP+  +++   SKPL VS         +    P+S+ KPF V  PQ   N
Sbjct: 419 VSQSSQKSKPLLVSQSSQRSKPLPVSQSLQNSNP-FPVSQPSSNSKPFPVSQPQPASN 475


>At5g54110.1 68418.m06737 vesicle-associated membrane family protein
           / VAMP family protein similar to VAP27 GI:6688926
           [Nicotiana plumbaginifolia]
          Length = 266

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 644 LALQLILDGRKLLPKPSQYLKWPYEPG 724
           +A  L+   R+L   PS YL +PYEPG
Sbjct: 66  VARSLLPARRRLRLDPSSYLYFPYEPG 92


>At3g52250.1 68416.m05742 myb family transcription factor contains
            Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 1677

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 365  KPLSVSVIYDYPETVYNTKPPASSEKPFIVYVPQKNPNVIANDISSTS 508
            +P S    + YPE +++      +E P  V  P+ NPN  A   S  S
Sbjct: 1370 EPESAPSGFRYPECLHHVPIEVCTENPIGVSAPRGNPNCHAESESGNS 1417


>At3g26050.1 68416.m03244 expressed protein
          Length = 533

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 299 EDITTRPKTEKPVQKTRTKLTSKPLSVSVIYDYPETVYNTKPPASS 436
           E  +T    E+P   + +K++S  L  SV+ +   ++ NTK  +SS
Sbjct: 162 EGNSTSLSKERPPSSSGSKVSSSKLESSVVIELDHSLKNTKKESSS 207


>At2g04600.1 68415.m00468 hypothetical protein 
          Length = 316

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +2

Query: 434 SEKPFIVYVPQKNPNVIANDISSTSCH*RTSTLILKMRXPQQSYSL 571
           S+  ++ Y P+K+PN + N +   S   R+S +I + +  Q++  L
Sbjct: 116 SKSFYVYYKPKKSPNQVGNLMVKRSDENRSSRVIFEAKGAQRTKDL 161


>At1g53935.1 68414.m06141 hypothetical protein
          Length = 144

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +2

Query: 329 KPVQKTRTKLT-SKPLSVSVIYDYPETVYNTKPPASSEKP----FIVYVPQKNPNVIAND 493
           KP+++++ +    KP   SV+     +   TKP   S KP    F+ +V  +NPN    D
Sbjct: 38  KPLEESKKEEHFKKPAKTSVVSKPSGSKTTTKPSHESTKPFCQEFVSFVKAENPNCFGID 97


>At1g56440.1 68414.m06491 serine/threonine protein
           phosphatase-related similar to SP|Q60676
           Serine/threonine protein phosphatase 5 (EC 3.1.3.16)
           (PP5) (Protein phosphatase T) (PPT) Mus musculus,
           Tetratricopeptide Repeats Of Protein Phosphatase 5 [Homo
           sapiens] GI:3212250; contains Pfam profile: PF00515: TPR
           Domain
          Length = 476

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = +2

Query: 227 YYDTKI*EIKRLPSRQPVRVQNLHEDITTRPKTEKPVQKTRTKLTSKPLSV 379
           Y D K    K +  +    +Q+  +++      +K +QK +T++TSKP+++
Sbjct: 191 YADIKSLLEKEIIEKATGAMQSTAQELLKTSGLDKKIQKPKTEMTSKPVTL 241


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,876,101
Number of Sequences: 28952
Number of extensions: 263216
Number of successful extensions: 698
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)