Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0127
         (767 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03740.1 68417.m00513 hypothetical protein                          29   3.4  
At4g03830.1 68417.m00534 myosin heavy chain-related                    28   6.0  
At2g12130.1 68415.m01306 hypothetical protein                          28   7.9  
At1g43245.1 68414.m04985 expressed protein                             28   7.9  

>At4g03740.1 68417.m00513 hypothetical protein 
          Length = 345

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +1

Query: 619 EELLQTPSVYIRHRLWPKKKEILNWRFLFGFSK 717
           EEL+Q P   +  RL PK+ E   W   FGFSK
Sbjct: 4   EELVQQPGRTLLRRLHPKRLEGSTW---FGFSK 33


>At4g03830.1 68417.m00534 myosin heavy chain-related
          Length = 578

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +1

Query: 388 LKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYVGMTTNTELVWLKRAAACPIMNI 567
           L P +  R ++   +   +W + +    V  +      G+  +    W  RAA+  ++ I
Sbjct: 140 LSPRKGFRVFEDFPEKDEQWRKSFFFFRVNELTFGEKTGLFVSE---WSARAASVDLLPI 196

Query: 568 HSEYTNSFESFVNRVI-WEEL 627
              + + F SFV + + WE L
Sbjct: 197 SKTFASHFSSFVRQDLGWESL 217


>At2g12130.1 68415.m01306 hypothetical protein
          Length = 209

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 400 VWV*GWRRGTRPSPLGRLQWGSCPQQNGSKFHAKTLC 290
           +W   WR    P  LGR  +G+C +     ++A+ LC
Sbjct: 170 LWNRSWRFVVSPDCLGRCSYGACCRNCFFYWYARELC 206


>At1g43245.1 68414.m04985 expressed protein
          Length = 558

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = +1

Query: 355 QEVMDVYLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYVGMTTNTELVWL 534
           QE +D +L  N+ P       + +  H ++++ED  PH  +R+    YV +       ++
Sbjct: 321 QEAIDDFLSDNIDPKTCCEMIESVLHHGIQFKEDSQPH-CLRLHACHYVALN-----AYI 374

Query: 535 KRAAACPIMNIHSE 576
             A A  I +I SE
Sbjct: 375 TLATAYRIRSIDSE 388


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,930,999
Number of Sequences: 28952
Number of extensions: 437069
Number of successful extensions: 1282
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)