Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0124
(919 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 135 4e-32
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 135 4e-32
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 93 2e-19
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 92 5e-19
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 92 5e-19
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 89 5e-18
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 82 6e-16
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 82 6e-16
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 81 8e-16
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 81 1e-15
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 78 7e-15
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 77 2e-14
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 77 2e-14
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 76 4e-14
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 56 2e-08
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 53 2e-07
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 53 2e-07
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 50 2e-06
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 50 2e-06
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 50 2e-06
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 49 4e-06
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 49 4e-06
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 49 5e-06
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 49 5e-06
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 48 1e-05
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 48 1e-05
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 48 1e-05
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 46 4e-05
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 46 4e-05
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 46 4e-05
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 46 5e-05
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 45 6e-05
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 45 8e-05
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 45 8e-05
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 45 8e-05
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 44 1e-04
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 44 1e-04
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 44 1e-04
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 44 2e-04
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 43 2e-04
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 43 2e-04
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 43 2e-04
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 41 0.001
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 40 0.002
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 40 0.002
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 40 0.002
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 39 0.004
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 38 0.007
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 38 0.007
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 37 0.016
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 37 0.016
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 37 0.022
At1g08270.2 68414.m00912 expressed protein low similarity to SP|... 36 0.050
At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR... 35 0.087
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 33 0.20
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains... 33 0.26
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 33 0.26
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 33 0.35
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 32 0.61
At2g18193.1 68415.m02117 AAA-type ATPase family protein contains... 31 1.1
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains... 31 1.4
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 31 1.4
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 30 1.9
At1g08270.1 68414.m00913 expressed protein low similarity to SP|... 29 3.3
At5g45260.1 68418.m05555 disease resistance protein (TIR-NBS-LRR... 29 4.3
At4g15110.1 68417.m02322 cytochrome P450 97B3, putative (CYP97B3... 29 4.3
At3g16030.1 68416.m02027 lectin protein kinase family protein co... 29 5.7
At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR... 29 5.7
At5g03930.1 68418.m00373 expressed protein 28 7.5
At3g50940.1 68416.m05577 AAA-type ATPase family protein contains... 28 7.5
At3g28570.1 68416.m03567 AAA-type ATPase family protein contains... 28 7.5
At1g68780.1 68414.m07862 leucine-rich repeat family protein cont... 28 7.5
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ... 28 10.0
At3g10380.1 68416.m01244 exocyst complex component-related ident... 28 10.0
At2g46620.1 68415.m05815 AAA-type ATPase family protein contains... 28 10.0
At2g03760.1 68415.m00336 steroid sulfotransferase, putative stro... 28 10.0
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 28 10.0
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 28 10.0
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 135 bits (326), Expect = 4e-32
Identities = 60/78 (76%), Positives = 72/78 (92%)
Frame = +2
Query: 509 LHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQ 688
LH +LP+KVDPLV+LM VEKVPDSTY+M+GGLD+QIKEIKEVIELP+KHPELF++LGIAQ
Sbjct: 135 LHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQ 194
Query: 689 PKGVLLYGPSGPWKDIIS 742
PKGVLLYGP G K +++
Sbjct: 195 PKGVLLYGPPGTGKTLLA 212
Score = 115 bits (277), Expect = 4e-26
Identities = 56/85 (65%), Positives = 66/85 (77%)
Frame = +3
Query: 249 RRKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKF 428
R KS NL RL+AQRNELN++VRMLR GSYVGEVVK M K KVLVKVHPEGK+
Sbjct: 48 REKSYNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKY 107
Query: 429 VVDLDKNVDINDVTANCRVALRNES 503
VVD+DK++DI +T + RVALRN+S
Sbjct: 108 VVDIDKSIDITKLTPSTRVALRNDS 132
Score = 57.6 bits (133), Expect = 1e-08
Identities = 35/69 (50%), Positives = 42/69 (60%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKMGAERL 854
LG+ K G PG GKTLLARAVAHH CTFIR S QK+IG + ++M E L
Sbjct: 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG-SELVQKYIG-EGSRMVRE-L 246
Query: 855 FVMGQRNKP 881
FVM + + P
Sbjct: 247 FVMAREHAP 255
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 135 bits (326), Expect = 4e-32
Identities = 60/78 (76%), Positives = 72/78 (92%)
Frame = +2
Query: 509 LHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQ 688
LH +LP+KVDPLV+LM VEKVPDSTY+M+GGLD+QIKEIKEVIELP+KHPELF++LGIAQ
Sbjct: 135 LHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQ 194
Query: 689 PKGVLLYGPSGPWKDIIS 742
PKGVLLYGP G K +++
Sbjct: 195 PKGVLLYGPPGTGKTLLA 212
Score = 116 bits (278), Expect = 3e-26
Identities = 55/85 (64%), Positives = 67/85 (78%)
Frame = +3
Query: 249 RRKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKF 428
R+K+ NL RL+AQRNELN++VRMLR GSYVGEVVK M K KVLVKVHPEGK+
Sbjct: 48 RQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKY 107
Query: 429 VVDLDKNVDINDVTANCRVALRNES 503
VVD+DK++DI +T + RVALRN+S
Sbjct: 108 VVDIDKSIDITKITPSTRVALRNDS 132
Score = 57.6 bits (133), Expect = 1e-08
Identities = 35/69 (50%), Positives = 42/69 (60%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKMGAERL 854
LG+ K G PG GKTLLARAVAHH CTFIR S QK+IG + ++M E L
Sbjct: 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG-SELVQKYIG-EGSRMVRE-L 246
Query: 855 FVMGQRNKP 881
FVM + + P
Sbjct: 247 FVMAREHAP 255
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 93.5 bits (222), Expect = 2e-19
Identities = 42/83 (50%), Positives = 59/83 (71%)
Frame = +2
Query: 494 QRKLYLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDA 673
Q+K + LP K+DP V++M VE+ PD+TY +GG +QI++I+EV+ELP+ HPE F
Sbjct: 174 QKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVR 233
Query: 674 LGIAQPKGVLLYGPSGPWKDIIS 742
LGI PKGVL YGP G K +++
Sbjct: 234 LGIDPPKGVLCYGPPGSGKTLVA 256
Score = 43.6 bits (98), Expect = 2e-04
Identities = 32/70 (45%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIR--GSXIRNWYQKFIGRKAAKMGAE 848
LG+ K C G PG GKTL+ARAVA+ FIR GS + QK+IG + A+M E
Sbjct: 234 LGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSEL---VQKYIG-EGARMVRE 289
Query: 849 RLFVMGQRNK 878
LF M + K
Sbjct: 290 -LFQMARSKK 298
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 91.9 bits (218), Expect = 5e-19
Identities = 40/75 (53%), Positives = 57/75 (76%)
Frame = +2
Query: 518 ILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKG 697
IL ++VDP+VS+M VEK P +Y +GGL+ QI+EIKE +ELP+ HPEL++ +GI PKG
Sbjct: 165 ILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKG 224
Query: 698 VLLYGPSGPWKDIIS 742
V+LYG G K +++
Sbjct: 225 VILYGEPGTGKTLLA 239
Score = 37.5 bits (83), Expect = 0.012
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIR--GSXIRNWYQKFIG 821
+G++ K G PG GKTLLA+AVA+ TF+R GS + QK++G
Sbjct: 217 IGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL---IQKYLG 264
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 91.9 bits (218), Expect = 5e-19
Identities = 40/75 (53%), Positives = 57/75 (76%)
Frame = +2
Query: 518 ILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKG 697
IL ++VDP+VS+M VEK P +Y +GGL+ QI+EIKE +ELP+ HPEL++ +GI PKG
Sbjct: 165 ILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKG 224
Query: 698 VLLYGPSGPWKDIIS 742
V+LYG G K +++
Sbjct: 225 VILYGEPGTGKTLLA 239
Score = 37.5 bits (83), Expect = 0.012
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIR--GSXIRNWYQKFIG 821
+G++ K G PG GKTLLA+AVA+ TF+R GS + QK++G
Sbjct: 217 IGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL---IQKYLG 264
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 88.6 bits (210), Expect = 5e-18
Identities = 40/74 (54%), Positives = 54/74 (72%)
Frame = +2
Query: 521 LPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGV 700
LP K+DP V++M VE+ PD TY VGG +QI++++EV+ELP+ HPE F LGI PKGV
Sbjct: 146 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGV 205
Query: 701 LLYGPSGPWKDIIS 742
L YGP G K +++
Sbjct: 206 LCYGPPGTGKTLLA 219
Score = 44.4 bits (100), Expect = 1e-04
Identities = 32/70 (45%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIR--GSXIRNWYQKFIGRKAAKMGAE 848
LG+ K C G PG GKTLLARAVA+ FIR GS + QK++G + A+M E
Sbjct: 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL---VQKYVG-EGARMVRE 252
Query: 849 RLFVMGQRNK 878
LF M + K
Sbjct: 253 -LFQMARSKK 261
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 81.8 bits (193), Expect = 6e-16
Identities = 41/91 (45%), Positives = 58/91 (63%)
Frame = +2
Query: 503 LYLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGI 682
L + + LP +VDP+V M+ E + +Y VGGL QI+E++E IELP+ +PELF +GI
Sbjct: 111 LTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGI 170
Query: 683 AQPKGVLLYGPSGPWKDIISSCCRSPHEVYF 775
PKGVLLYGP G K +++ S + F
Sbjct: 171 KPPKGVLLYGPPGTGKTLLARAIASNIDANF 201
Score = 37.9 bits (84), Expect = 0.009
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 351 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVAL 491
G +GEV++P+D ++++VK ++VV VD +T+ RV L
Sbjct: 60 GQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVL 106
Score = 33.9 bits (74), Expect = 0.15
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIR 782
+G++ K G PG GKTLLARA+A ++ F++
Sbjct: 168 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLK 203
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 81.8 bits (193), Expect = 6e-16
Identities = 41/91 (45%), Positives = 58/91 (63%)
Frame = +2
Query: 503 LYLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGI 682
L + + LP +VDP+V M+ E + +Y VGGL QI+E++E IELP+ +PELF +GI
Sbjct: 111 LTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGI 170
Query: 683 AQPKGVLLYGPSGPWKDIISSCCRSPHEVYF 775
PKGVLLYGP G K +++ S + F
Sbjct: 171 KPPKGVLLYGPPGTGKTLLARAIASNIDANF 201
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/94 (25%), Positives = 49/94 (52%)
Frame = +3
Query: 210 VLHNQD*RVTAHCRRKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDK 389
+LH+++ + + R +NLR + + N+ ++ L+ G +GEV++P+D
Sbjct: 22 LLHHKE--LESRVRTARENLRAAKKEFNKTEDDLKSLQSV-------GQIIGEVLRPLDN 72
Query: 390 KKVLVKVHPEGKFVVDLDKNVDINDVTANCRVAL 491
++++VK ++VV VD +T+ RV L
Sbjct: 73 ERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVL 106
Score = 33.9 bits (74), Expect = 0.15
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIR 782
+G++ K G PG GKTLLARA+A ++ F++
Sbjct: 168 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLK 203
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 81.4 bits (192), Expect = 8e-16
Identities = 38/85 (44%), Positives = 52/85 (61%)
Frame = +2
Query: 521 LPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGV 700
LP++ D V M V++ P Y +GGL+KQI+E+ E I LP+ H E F+ LGI PKGV
Sbjct: 148 LPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGV 207
Query: 701 LLYGPSGPWKDIISSCCRSPHEVYF 775
LLYGP G K +++ C + F
Sbjct: 208 LLYGPPGTGKTLMARACAAQTNATF 232
Score = 35.9 bits (79), Expect = 0.038
Identities = 25/69 (36%), Positives = 34/69 (49%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKMGAERL 854
LG+R K G PG GKTL+ARA A TF++ + Q FIG AK+
Sbjct: 199 LGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAG-PQLVQMFIG-DGAKL-VRDA 255
Query: 855 FVMGQRNKP 881
F++ + P
Sbjct: 256 FLLAKEKSP 264
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 81.0 bits (191), Expect = 1e-15
Identities = 37/85 (43%), Positives = 52/85 (61%)
Frame = +2
Query: 521 LPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGV 700
LP++ D V M V++ P Y +GGL+KQI+E+ E I LP+ H E F+ LG+ PKGV
Sbjct: 149 LPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGV 208
Query: 701 LLYGPSGPWKDIISSCCRSPHEVYF 775
LLYGP G K +++ C + F
Sbjct: 209 LLYGPPGTGKTLMARACAAQTNATF 233
Score = 34.7 bits (76), Expect = 0.087
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIR 782
LG+R K G PG GKTL+ARA A TF++
Sbjct: 200 LGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLK 235
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 78.2 bits (184), Expect = 7e-15
Identities = 39/111 (35%), Positives = 67/111 (60%)
Frame = +2
Query: 563 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIIS 742
E++ D Y+ VGG+ KQ+ +I+E++ELP++HP+LF ++G+ PKG+LLYGP G K +I+
Sbjct: 199 ERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 258
Query: 743 SCCRSPHEVYFHTWFXDQKLVPKIYWEKGSQNGCREALRNGPKKQAPXFXF 895
+ +F +++ K+ E S++ R+A +K AP F
Sbjct: 259 RAVANETGAFFFC-INGPEIMSKLAGE--SESNLRKAFEEA-EKNAPSIIF 305
Score = 63.7 bits (148), Expect = 2e-10
Identities = 38/131 (29%), Positives = 67/131 (51%)
Frame = +2
Query: 506 YLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIA 685
+ H L N +P V +VP+ ++ +GGL+ +E++E ++ PV+HPE F+ G++
Sbjct: 454 HFHTALGNS-NPSALRETVVEVPNVSWNDIGGLENVKRELQETVQYPVEHPEKFEKFGMS 512
Query: 686 QPKGVLLYGPSGPWKDIISSCCRSPHEVYFHTWFXDQKLVPKIYWEKGSQNGCREALRNG 865
KGVL YGP G K +++ + + F + + L W S+ RE + +
Sbjct: 513 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT---MWFGESEANVRE-IFDK 568
Query: 866 PKKQAPXFXFF 898
++ AP FF
Sbjct: 569 ARQSAPCVLFF 579
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 76.6 bits (180), Expect = 2e-14
Identities = 38/111 (34%), Positives = 67/111 (60%)
Frame = +2
Query: 563 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIIS 742
E++ + Y+ VGG+ KQ+ +I+E++ELP++HP+LF ++G+ PKG+LLYGP G K +I+
Sbjct: 199 ERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 258
Query: 743 SCCRSPHEVYFHTWFXDQKLVPKIYWEKGSQNGCREALRNGPKKQAPXFXF 895
+ +F +++ K+ E S++ R+A +K AP F
Sbjct: 259 RAVANETGAFFFC-INGPEIMSKLAGE--SESNLRKAFEEA-EKNAPSIIF 305
Score = 65.7 bits (153), Expect = 4e-11
Identities = 39/131 (29%), Positives = 68/131 (51%)
Frame = +2
Query: 506 YLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIA 685
+ H L N +P V +VP+ ++E +GGL+ +E++E ++ PV+HPE F+ G++
Sbjct: 454 HFHTALGNS-NPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMS 512
Query: 686 QPKGVLLYGPSGPWKDIISSCCRSPHEVYFHTWFXDQKLVPKIYWEKGSQNGCREALRNG 865
KGVL YGP G K +++ + + F + + L W S+ RE + +
Sbjct: 513 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT---MWFGESEANVRE-IFDK 568
Query: 866 PKKQAPXFXFF 898
++ AP FF
Sbjct: 569 ARQSAPCVLFF 579
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 76.6 bits (180), Expect = 2e-14
Identities = 38/111 (34%), Positives = 67/111 (60%)
Frame = +2
Query: 563 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIIS 742
E++ + Y+ VGG+ KQ+ +I+E++ELP++HP+LF ++G+ PKG+LLYGP G K +I+
Sbjct: 200 ERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 259
Query: 743 SCCRSPHEVYFHTWFXDQKLVPKIYWEKGSQNGCREALRNGPKKQAPXFXF 895
+ +F +++ K+ E S++ R+A +K AP F
Sbjct: 260 RAVANETGAFFFC-INGPEIMSKLAGE--SESNLRKAFEEA-EKNAPSIIF 306
Score = 64.1 bits (149), Expect = 1e-10
Identities = 35/113 (30%), Positives = 62/113 (54%)
Frame = +2
Query: 560 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDII 739
V +VP+ ++E +GGL+ +E++E ++ PV+HPE F+ G++ KGVL YGP G K ++
Sbjct: 472 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 531
Query: 740 SSCCRSPHEVYFHTWFXDQKLVPKIYWEKGSQNGCREALRNGPKKQAPXFXFF 898
+ + + F + + L W S+ RE + + ++ AP FF
Sbjct: 532 AKAIANECQANFISIKGPELLT---MWFGESEANVRE-IFDKARQSAPCVLFF 580
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 75.8 bits (178), Expect = 4e-14
Identities = 33/75 (44%), Positives = 50/75 (66%)
Frame = +2
Query: 518 ILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKG 697
+LP + D +SL+ + PD +Y +GG D Q +EI+E +ELP+ H EL+ +GI P+G
Sbjct: 132 VLPPEADSSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRG 191
Query: 698 VLLYGPSGPWKDIIS 742
VLLYGP G K +++
Sbjct: 192 VLLYGPPGTGKTMLA 206
Score = 37.1 bits (82), Expect = 0.016
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = +3
Query: 711 GLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKMGAERLFVMGQRNKP 881
G PG GKT+LA+AVA+H FIR + QK++G + +M +F + + N P
Sbjct: 196 GPPGTGKTMLAKAVANHTTAAFIRVVG-SEFVQKYLG-EGPRM-VRDVFRLAKENAP 249
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/87 (29%), Positives = 49/87 (56%)
Frame = +2
Query: 515 KILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 694
KI + V P ++ + ++P T++ VGGL K++++ +E P+KH F +GI+ +
Sbjct: 262 KIAKSVVGPSINRGITVEIPKVTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMR 321
Query: 695 GVLLYGPSGPWKDIISSCCRSPHEVYF 775
G+LL+GP G K ++ + + F
Sbjct: 322 GILLHGPPGCSKTTLAKAAANAAQASF 348
Score = 42.3 bits (95), Expect = 4e-04
Identities = 17/46 (36%), Positives = 30/46 (65%)
Frame = +2
Query: 593 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWK 730
+GG ++ ++ ++E+I P ++P LG+ P+G+LLYGP G K
Sbjct: 24 IGGNERALQALRELIIFPFRYPLEARTLGLKWPRGLLLYGPPGTGK 69
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 53.2 bits (122), Expect = 2e-07
Identities = 33/123 (26%), Positives = 56/123 (45%)
Frame = +2
Query: 530 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 709
K+ P ++ +VP +E VGG ++ ++ E +E P KH + F +G P G+L++
Sbjct: 705 KIRPSAMREVILEVPKVNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGILMF 764
Query: 710 GPSGPWKDIISSCCRSPHEVYFHTWFXDQKLVPKIYWEKGSQNGCREALRNGPKKQAPXF 889
GP G K +++ S ++ F +L K W S+ R + AP
Sbjct: 765 GPPGCSKTLMARAVASEAKLNFLA-VKGPELFSK--WVGESEKAVRSLFAKA-RANAPSI 820
Query: 890 XFF 898
FF
Sbjct: 821 IFF 823
Score = 31.9 bits (69), Expect = 0.61
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +2
Query: 593 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWK 730
+GGL K+ ++++I+ L +LG+ KGVL++GP G K
Sbjct: 387 LGGLSKEYAILRDIIDSSSIKNSL-SSLGLRPTKGVLIHGPPGTGK 431
Score = 31.9 bits (69), Expect = 0.61
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTF--IRGSXIRNWY 806
LGLR K G PG GKT LAR A H F + G I + Y
Sbjct: 413 LGLRPTKGVLIHGPPGTGKTSLARTFARHSGVNFFSVNGPEIISQY 458
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/56 (39%), Positives = 36/56 (64%)
Frame = +2
Query: 575 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIIS 742
D ++ +GGL + I ++KE++ P+ +PE F + I P+GVLL GP G K +I+
Sbjct: 377 DINFDDIGGLSEYINDLKEMVFFPLLYPEFFASYSITPPRGVLLCGPPGTGKTLIA 432
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/54 (44%), Positives = 36/54 (66%)
Frame = +2
Query: 581 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIIS 742
T+E V G+D+ ++ +E++E +K PE F ALG PKGVLL GP G K +++
Sbjct: 221 TFEDVAGVDEAKQDFEEIVEF-LKTPEKFSALGAKIPKGVLLTGPPGTGKTLLA 273
Score = 33.1 bits (72), Expect = 0.26
Identities = 24/69 (34%), Positives = 33/69 (47%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKMGAERL 854
LG + K G PG GKTLLA+A+A F S + + F+G A++ A L
Sbjct: 251 LGAKIPKGVLLTGPPGTGKTLLAKAIAGEAGVPFFSLSG-SEFIEMFVGVGASR--ARDL 307
Query: 855 FVMGQRNKP 881
F + N P
Sbjct: 308 FNKAKANSP 316
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/62 (37%), Positives = 39/62 (62%)
Frame = +2
Query: 593 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIISSCCRSPHEVY 772
V G+D+ + E++E+++ +K+P+LFD +GI P GVLL GP G K +++ V
Sbjct: 432 VAGIDEAVDELQELVKY-LKNPDLFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 490
Query: 773 FH 778
F+
Sbjct: 491 FY 492
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/65 (36%), Positives = 40/65 (61%)
Frame = +2
Query: 548 SLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPW 727
S + KVP+ ++ VGGL+ I + ++LP+ H +LF + G+ + GVLLYGP G
Sbjct: 645 SALGAPKVPNVKWDDVGGLEDVKTSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGTG 703
Query: 728 KDIIS 742
K +++
Sbjct: 704 KTLLA 708
Score = 33.9 bits (74), Expect = 0.15
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 678 GLRNQKESYCMGLPGPGKTLLARAVAHHMRCTF--IRGSXIRNWY 806
GLR + G PG GKTLLA+AVA F ++G + N Y
Sbjct: 687 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMY 731
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 49.2 bits (112), Expect = 4e-06
Identities = 20/52 (38%), Positives = 35/52 (67%)
Frame = +2
Query: 584 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDII 739
++ V GL+ + +KEV+ +P+ +PE FD LG+ P+G+LL+G G K ++
Sbjct: 718 WDSVAGLEGVTQCMKEVVLIPLLYPEFFDNLGLTPPRGILLHGHPGTGKTLV 769
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 49.2 bits (112), Expect = 4e-06
Identities = 23/58 (39%), Positives = 33/58 (56%)
Frame = +2
Query: 569 VPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIIS 742
VPD ++ VGGLD + I P+K P+++ A G+ G LLYGP G K +I+
Sbjct: 522 VPDVKWDDVGGLDHLRLQFNRYIVRPIKKPDIYKAFGVDLETGFLLYGPPGCGKTLIA 579
Score = 45.2 bits (102), Expect = 6e-05
Identities = 21/73 (28%), Positives = 39/73 (53%)
Frame = +2
Query: 560 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDII 739
VE T++ GG+ K + E++ + P+ +PE F +G+ P G+L +GP G K +
Sbjct: 224 VEGTKGPTFKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKTKL 283
Query: 740 SSCCRSPHEVYFH 778
++ + V F+
Sbjct: 284 ANAIANEAGVPFY 296
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 48.8 bits (111), Expect = 5e-06
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 13/124 (10%)
Frame = +2
Query: 485 RSSQRKLYLHKILPNKVDPLVSLMMVEKVP-DSTYEMVGGLDKQIKEIKEVIELPVKHPE 661
R ++L I N+ + +++ ++ + D + +GGL+ + + E++ LP+K PE
Sbjct: 52 REIAKRLGRPLIQTNQYEDVIACDVINPLHIDVEFGSIGGLESIKQALYELVILPLKRPE 111
Query: 662 LFDALG--IAQPKGVLLYGPSGPWKDIISSCCRSPHEVYF---------HTWFXD-QKLV 805
LF A G + KGVLLYGP G K +++ E F WF D QKLV
Sbjct: 112 LF-AYGKLLGPQKGVLLYGPPGTGKTMLAKAIARESEAVFINVKVSNLMSKWFGDAQKLV 170
Query: 806 PKIY 817
++
Sbjct: 171 SAVF 174
Score = 31.9 bits (69), Expect = 0.61
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 690 QKESYCMGLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIG 821
QK G PG GKT+LA+A+A FI + N K+ G
Sbjct: 122 QKGVLLYGPPGTGKTMLAKAIARESEAVFI-NVKVSNLMSKWFG 164
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains Pfam
profile PF00004: ATPase, AAA family
Length = 1122
Score = 48.8 bits (111), Expect = 5e-06
Identities = 27/97 (27%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Frame = +2
Query: 488 SSQRKLYLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELF 667
SS++ + + + + L+S +++ D T++ +G L+K +KE++ LP++ PELF
Sbjct: 790 SSKKDIVVENVFEKR---LLSDVILPSDIDVTFDDIGALEKVKDILKELVMLPLQRPELF 846
Query: 668 DALGIAQP-KGVLLYGPSGPWKDIISSCCRSPHEVYF 775
+ +P KG+LL+GP G K +++ + F
Sbjct: 847 CKGELTKPCKGILLFGPPGTGKTMLAKAVAKEADANF 883
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 9/59 (15%)
Frame = +3
Query: 711 GLPGPGKTLLARAVAHHMRCTFIR---GSXIRNW------YQKFIGRKAAKMGAERLFV 860
G PG GKT+LA+AVA FI S W Y K + A+KM +FV
Sbjct: 862 GPPGTGKTMLAKAVAKEADANFINISMSSITSKWFGEGEKYVKAVFSLASKMSPSVIFV 920
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/55 (36%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Frame = +2
Query: 581 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPSGPWKDIIS 742
+++ +G L+ + +KE++ LP++ PELFD + +P KG+LL+GP G K +++
Sbjct: 961 SFDDIGALENVKETLKELVMLPLQRPELFDKGQLTKPTKGILLFGPPGTGKTMLA 1015
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 711 GLPGPGKTLLARAVAHHMRCTFI 779
G PG GKT+LA+AVA FI
Sbjct: 1005 GPPGTGKTMLAKAVATEAGANFI 1027
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 47.6 bits (108), Expect = 1e-05
Identities = 23/54 (42%), Positives = 35/54 (64%)
Frame = +2
Query: 581 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIIS 742
T++ V G+D+ ++ EV+E +K PE F A+G PKGVLL GP G K +++
Sbjct: 225 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGAKIPKGVLLIGPPGTGKTLLA 277
Score = 31.9 bits (69), Expect = 0.61
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKMGAERL 854
+G + K +G PG GKTLLA+A+A F S + + F+G A+++ L
Sbjct: 255 VGAKIPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISG-SEFVEMFVGVGASRV--RDL 311
Query: 855 FVMGQRNKP 881
F + N P
Sbjct: 312 FKKAKENAP 320
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 47.6 bits (108), Expect = 1e-05
Identities = 23/54 (42%), Positives = 35/54 (64%)
Frame = +2
Query: 581 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIIS 742
T++ V G+D+ ++ EV+E +K PE F A+G PKGVLL GP G K +++
Sbjct: 218 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGARIPKGVLLVGPPGTGKTLLA 270
Score = 33.1 bits (72), Expect = 0.26
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKMGAERL 854
+G R K +G PG GKTLLA+A+A F S + + F+G A+++ L
Sbjct: 248 VGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG-SEFVEMFVGVGASRV--RDL 304
Query: 855 FVMGQRNKP 881
F + N P
Sbjct: 305 FKKAKENAP 313
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 46.0 bits (104), Expect = 4e-05
Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Frame = +2
Query: 494 QRKLYLHKILPNKVDP-LVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFD 670
+R L+L I ++ + VS ++ ++ +G L+ K + E++ LP++ PELF
Sbjct: 118 KRFLFLQNIAKDEFETNFVSAVVAPGEIGVKFDDIGALEHVKKTLNELVILPMRRPELFT 177
Query: 671 ALGIAQP-KGVLLYGPSGPWKDIIS 742
+ +P KG+LL+GP G K +++
Sbjct: 178 RGNLLRPCKGILLFGPPGTGKTLLA 202
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +3
Query: 681 LRNQKESYCMGLPGPGKTLLARAVAHHMRCTFI 779
LR K G PG GKTLLA+A+A FI
Sbjct: 182 LRPCKGILLFGPPGTGKTLLAKALATEAGANFI 214
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 46.0 bits (104), Expect = 4e-05
Identities = 20/57 (35%), Positives = 36/57 (63%)
Frame = +2
Query: 572 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIIS 742
P+ +E + GL+ K +KE + +P+K+P F+ L + KG+LL+GP G K +++
Sbjct: 107 PNIKWESIKGLENAKKLLKEAVVMPIKYPTYFNGL-LTPWKGILLFGPPGTGKTMLA 162
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +3
Query: 711 GLPGPGKTLLARAVAHHMRCTFIR---GSXIRNW 803
G PG GKT+LA+AVA TF S + W
Sbjct: 152 GPPGTGKTMLAKAVATECNTTFFNISASSVVSKW 185
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 46.0 bits (104), Expect = 4e-05
Identities = 20/57 (35%), Positives = 36/57 (63%)
Frame = +2
Query: 572 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIIS 742
P+ +E + GL+ K +KE + +P+K+P F+ L + KG+LL+GP G K +++
Sbjct: 98 PNIKWESIKGLENAKKLLKEAVVMPIKYPTYFNGL-LTPWKGILLFGPPGTGKTMLA 153
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +3
Query: 711 GLPGPGKTLLARAVAHHMRCTFIR---GSXIRNW 803
G PG GKT+LA+AVA TF S + W
Sbjct: 143 GPPGTGKTMLAKAVATECNTTFFNISASSVVSKW 176
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 45.6 bits (103), Expect = 5e-05
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Frame = +2
Query: 575 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALG--IAQPKGVLLYGPSGPWKDIISSC 748
D + +GGL+ + + E++ LP+K PELF A G + KGVLLYGP G K +++
Sbjct: 80 DVEFGSIGGLETIKQALYELVILPLKRPELF-AYGKLLGPQKGVLLYGPPGTGKTMLAKA 138
Query: 749 CRSPHEVYF---------HTWFXD-QKLVPKIY 817
F WF D QKLV ++
Sbjct: 139 IAKESGAVFINVRVSNLMSKWFGDAQKLVSAVF 171
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 690 QKESYCMGLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIG 821
QK G PG GKT+LA+A+A FI + N K+ G
Sbjct: 119 QKGVLLYGPPGTGKTMLAKAIAKESGAVFI-NVRVSNLMSKWFG 161
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 45.2 bits (102), Expect = 6e-05
Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Frame = +2
Query: 584 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPSGPWKDIIS 742
+E +G L+ K + E++ LP++ PELF + +P KG+LL+GP G K +++
Sbjct: 350 FEDIGALEDVKKALNELVILPMRRPELFARGNLLRPCKGILLFGPPGTGKTLLA 403
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +3
Query: 681 LRNQKESYCMGLPGPGKTLLARAVAHHMRCTFI 779
LR K G PG GKTLLA+A+A FI
Sbjct: 383 LRPCKGILLFGPPGTGKTLLAKALATEAGANFI 415
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 44.8 bits (101), Expect = 8e-05
Identities = 23/62 (37%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Frame = +2
Query: 563 EKVPDS--TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDI 736
++VP++ T+ V G D+ E++EV++ +K+P+ + ALG PKG LL GP G K +
Sbjct: 240 QEVPETGVTFGDVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTL 298
Query: 737 IS 742
++
Sbjct: 299 LA 300
Score = 32.3 bits (70), Expect = 0.46
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKM 839
LG + K +G PG GKTLLARAVA F + + F+G A+++
Sbjct: 278 LGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF-SCAASEFVELFVGVGASRV 331
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 44.8 bits (101), Expect = 8e-05
Identities = 19/55 (34%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Frame = +2
Query: 581 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPSGPWKDIIS 742
T++ +G LD+ + ++E++ LP++ P+LF G+ +P +G+LL+GP G K +++
Sbjct: 519 TFKDIGALDEIKESLQELVMLPLRRPDLFTG-GLLKPCRGILLFGPPGTGKTMLA 572
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +3
Query: 711 GLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKMGAERLFVMGQRNKP 881
G PG GKT+LA+A+A +FI S + K+ G + A LF + + P
Sbjct: 562 GPPGTGKTMLAKAIAKEAGASFINVS-MSTITSKWFGEDEKNVRA--LFTLASKVSP 615
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 44.8 bits (101), Expect = 8e-05
Identities = 19/55 (34%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Frame = +2
Query: 581 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPSGPWKDIIS 742
T++ +G LD+ + ++E++ LP++ P+LF G+ +P +G+LL+GP G K +++
Sbjct: 514 TFKDIGALDEIKESLQELVMLPLRRPDLFTG-GLLKPCRGILLFGPPGTGKTMLA 567
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +3
Query: 711 GLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKMGAERLFVMGQRNKP 881
G PG GKT+LA+A+A +FI S + K+ G + A LF + + P
Sbjct: 557 GPPGTGKTMLAKAIAKEAGASFINVS-MSTITSKWFGEDEKNVRA--LFTLASKVSP 610
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/55 (34%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Frame = +2
Query: 581 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPSGPWKDIIS 742
T+ +G LD+ + ++E++ LP++ P+LF G+ +P +G+LL+GP G K +++
Sbjct: 412 TFADIGSLDETKESLQELVMLPLRRPDLFKG-GLLKPCRGILLFGPPGTGKTMMA 465
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 711 GLPGPGKTLLARAVAHHMRCTFIRGS 788
G PG GKT++A+A+A+ +FI S
Sbjct: 455 GPPGTGKTMMAKAIANEAGASFINVS 480
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = +2
Query: 581 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIISSCCRSP 760
T+ V G+D+ +E++E++E +++PE + LG P+GVLL G G K +++
Sbjct: 323 TFADVAGVDEAKEELEEIVEF-LRNPEKYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 381
Query: 761 HEVYF 775
EV F
Sbjct: 382 AEVPF 386
Score = 37.9 bits (84), Expect = 0.009
Identities = 24/69 (34%), Positives = 36/69 (52%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKMGAERL 854
LG R + +GLPG GKTLLA+AVA FI S + + ++G A+++ L
Sbjct: 353 LGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS-ASEFVELYVGMGASRV--RDL 409
Query: 855 FVMGQRNKP 881
F ++ P
Sbjct: 410 FARAKKEAP 418
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/87 (26%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Frame = +2
Query: 518 ILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-K 694
+ +K+ +++ +V++ P ++ V GL+ + + E++ LP K +LF G+ +P +
Sbjct: 193 VYDDKLVEMINTTIVDRSPSVKWDDVAGLNGAKQALLEMVILPAKRRDLF--TGLRRPAR 250
Query: 695 GVLLYGPSGPWKDIISSCCRSPHEVYF 775
G+LL+GP G K +++ S + F
Sbjct: 251 GLLLFGPPGNGKTMLAKAVASESQATF 277
Score = 31.5 bits (68), Expect = 0.81
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 678 GLRNQKESYCM-GLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKMGAERL 854
GLR + G PG GKT+LA+AVA + TF S + K++G +A K+ + L
Sbjct: 244 GLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVS-ASSLTSKWVG-EAEKL-VKTL 300
Query: 855 FVMGQRNKP 881
F + +P
Sbjct: 301 FQVAISRQP 309
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Frame = +2
Query: 563 EKVPDS--TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDI 736
++VP++ ++ V G D+ E++EV++ +K+P+ + ALG PKG LL GP G K +
Sbjct: 252 QEVPETGVSFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTL 310
Query: 737 IS 742
++
Sbjct: 311 LA 312
Score = 32.3 bits (70), Expect = 0.46
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKM 839
LG + K +G PG GKTLLARAVA F + + F+G A+++
Sbjct: 290 LGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF-SCAASEFVELFVGVGASRV 343
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/65 (32%), Positives = 38/65 (58%)
Frame = +2
Query: 581 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIISSCCRSP 760
T+ V G+D+ +E++E++E +K+P+ + LG P+GVLL G G K +++
Sbjct: 327 TFADVAGVDEAKEELEEIVEF-LKNPDRYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 385
Query: 761 HEVYF 775
+V F
Sbjct: 386 SDVPF 390
Score = 37.1 bits (82), Expect = 0.016
Identities = 24/69 (34%), Positives = 36/69 (52%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKMGAERL 854
LG R + +GLPG GKTLLA+AVA FI S + + ++G A+++ L
Sbjct: 357 LGARPPRGVLLVGLPGTGKTLLAKAVAGESDVPFISCS-ASEFVELYVGMGASRV--RDL 413
Query: 855 FVMGQRNKP 881
F ++ P
Sbjct: 414 FARAKKEAP 422
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +2
Query: 581 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPSGPWKDIIS 742
T++ +G L+ +KE++ LP + PELF + +P G+LL+GPSG K +++
Sbjct: 733 TFDDIGALENVKDTLKELVMLPFQWPELFCKGQLTKPCNGILLFGPSGTGKTMLA 787
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +2
Query: 581 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPSGPWKDIIS 742
++ +G L+ +KE++ LP++ PELF + +P KG+LL+GP G K +++
Sbjct: 948 SFSDIGALENVKDTLKELVMLPLQRPELFGKGQLTKPTKGILLFGPPGTGKTMLA 1002
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 711 GLPGPGKTLLARAVAHHMRCTFI 779
G PG GKT+LA+AVA FI
Sbjct: 992 GPPGTGKTMLAKAVATEAGANFI 1014
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/46 (45%), Positives = 27/46 (58%)
Frame = +2
Query: 584 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSG 721
+E VGG+ IKE+IELP K P++F + VLLYGP G
Sbjct: 843 WEDVGGVTDIKNAIKEMIELPSKFPKIFAKSPLRLRSNVLLYGPPG 888
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = +2
Query: 581 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIIS 742
T++ V G D +E++EV+E +K+P F LG PKG+LL G G K +++
Sbjct: 360 TFKDVKGCDDAKQELEEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLA 412
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/74 (29%), Positives = 32/74 (43%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKMGAERL 854
LG + K G PG GKTLLA+A+A F + + + F+G A ++ R
Sbjct: 390 LGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG-SEFEEMFVGVGARRV---RS 445
Query: 855 FVMGQRNKPPSFXF 896
+ K P F
Sbjct: 446 LFQAAKKKAPCIIF 459
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/69 (39%), Positives = 36/69 (52%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKMGAERL 854
LG R + +G PG GKTLLARAVA F S + + F+GR AA++ L
Sbjct: 362 LGARLPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVS-ASEFVELFVGRGAARI--RDL 418
Query: 855 FVMGQRNKP 881
F ++N P
Sbjct: 419 FNAARKNSP 427
Score = 32.3 bits (70), Expect = 0.46
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 566 KVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIIS 742
K P ++ V G+D E+ E++ ++ + LG P+GVLL GP G K +++
Sbjct: 327 KNPTVGFDDVEGVDSAKDELVEIVSC-LQGSINYKKLGARLPRGVLLVGPPGTGKTLLA 384
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +2
Query: 584 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIISSCCRSPH 763
++ V G D+ +EI E + +K+P+ ++ LG PKG LL GP G K +++
Sbjct: 321 FKDVAGCDEAKQEIMEFVHF-LKNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES 379
Query: 764 EVYF 775
V F
Sbjct: 380 GVPF 383
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIG 821
LG + K + +G PG GKTLLA+A A F+ S ++ + F+G
Sbjct: 350 LGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISG-SDFMEMFVG 397
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/54 (35%), Positives = 34/54 (62%)
Frame = +2
Query: 581 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIIS 742
T++ G + +E++E++ + +K+ E F GI PKGVLL+GP G K +++
Sbjct: 314 TFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLA 366
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/62 (33%), Positives = 33/62 (53%)
Frame = +3
Query: 711 GLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKMGAERLFVMGQRNKPPSF 890
G PG GKTLLA+A+A F + ++ + F+G A+++ + LF R+ PS
Sbjct: 356 GPPGTGKTLLAKAIAGEAGLPFFAANG-TDFVEMFVGVAASRV--KDLFA-SSRSYAPSI 411
Query: 891 XF 896
F
Sbjct: 412 IF 413
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 38.3 bits (85), Expect = 0.007
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +2
Query: 557 MVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPSGPWKD 733
+V + P+ + V GL+ + ++E + LPVK P+ F G +P + LLYGP G K
Sbjct: 122 IVREKPNIKWSDVAGLESAKQALQEAVILPVKFPQFF--TGKRRPWRAFLLYGPPGTGKS 179
Query: 734 IIS 742
++
Sbjct: 180 YLA 182
Score = 27.9 bits (59), Expect = 10.0
Identities = 23/62 (37%), Positives = 31/62 (50%)
Frame = +3
Query: 711 GLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKMGAERLFVMGQRNKPPSF 890
G PG GK+ LA+AVA TF S + K++G ++ K+ LF M R PS
Sbjct: 172 GPPGTGKSYLAKAVATEADSTFFSVSS-SDLVSKWMG-ESEKL-VSNLFEMA-RESAPSI 227
Query: 891 XF 896
F
Sbjct: 228 IF 229
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 38.3 bits (85), Expect = 0.007
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = +2
Query: 593 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIIS 742
V G+D+ E++E++ ++ P+ F LG PKGVLL GP G K +++
Sbjct: 229 VKGVDEAKAELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLA 277
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKM 839
LG + K +G PG GKT+LARA+A F S + + F+G A ++
Sbjct: 255 LGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSG-SEFEEMFVGVGARRV 308
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 37.1 bits (82), Expect = 0.016
Identities = 21/72 (29%), Positives = 36/72 (50%)
Frame = +2
Query: 560 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDII 739
+E+ D + V GL K E++E+++ H E++ G+ P G+LL GP G K ++
Sbjct: 401 LERGVDVKFTDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVKIPGGILLCGPPGVGKTLL 459
Query: 740 SSCCRSPHEVYF 775
+ V F
Sbjct: 460 AKAVAGEAGVNF 471
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 37.1 bits (82), Expect = 0.016
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = +2
Query: 584 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIISSCCRSPH 763
++ V G ++ +EI E + +++P+ ++ LG PKG LL GP G K +++
Sbjct: 326 FKDVAGCEEAKQEIMEFVHF-LQNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES 384
Query: 764 EVYF 775
V F
Sbjct: 385 AVPF 388
Score = 31.5 bits (68), Expect = 0.81
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIG 821
LG + K + +G PG GKTLLA+A A F+ S ++ + F+G
Sbjct: 355 LGAKIPKGALLVGPPGTGKTLLAKATAGESAVPFLSISG-SDFMEMFVG 402
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 36.7 bits (81), Expect = 0.022
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 560 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPSGPWKDI 736
+++ P+ ++ + GL+ K + E++ P+ P++F G P KG+LL+GP G K +
Sbjct: 1 MDRDPNVRWDDIAGLEHAKKCVTEMVIWPLLRPDIFK--GCRSPGKGLLLFGPPGTGKTM 58
Query: 737 I 739
I
Sbjct: 59 I 59
>At1g08270.2 68414.m00912 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 132
Score = 35.5 bits (78), Expect = 0.050
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 557 MVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGV 700
++ + P+ + +V GL+ + +KE + LPV P+ F A I P+ V
Sbjct: 83 IIREKPNVKWTVVAGLESAKQALKEAVILPVNFPQFFTARAIYDPRDV 130
>At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1226
Score = 34.7 bits (76), Expect = 0.087
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 708 MGLPGPGKTLLARAVAHHMRCTFIRGSXIRN 800
+G+PG GKT LAR + +RC F+R I++
Sbjct: 236 VGMPGIGKTTLAREIYETLRCKFLRHGLIQD 266
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 33.5 bits (73), Expect = 0.20
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 711 GLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKMGAERL 854
G+PG GKT LA+AV +HM + I N+ + F ++ ER+
Sbjct: 196 GMPGIGKTTLAKAVFNHMSTDYDASCFIENFDEAFHKEGLHRLLKERI 243
>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 341
Score = 33.1 bits (72), Expect = 0.26
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 578 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWK 730
ST+E + D +++ E ++ ++ E + +G A +G LLYGP G K
Sbjct: 216 STFETMAMEDDLKRDVIEDLDRFIRRKEFYKRVGKAWKRGYLLYGPPGTGK 266
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 33.1 bits (72), Expect = 0.26
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 578 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWK 730
ST+E + D +++ E ++ ++ E + +G A +G LLYGP G K
Sbjct: 216 STFETMAMEDDLKRDVIEDLDRFIRRKEFYKRVGKAWKRGYLLYGPPGTGK 266
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 32.7 bits (71), Expect = 0.35
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 593 VGGLDKQIKEI-KEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWKDIIS 742
+GGL + +I + V P + LGI KG+LL+GP G K +++
Sbjct: 217 IGGLGAEFADIFRRAFASRVFPPHVTSRLGIKHVKGMLLFGPPGTGKTLMA 267
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 675 LGLRNQKESYCMGLPGPGKTLLARAV 752
LG+++ K G PG GKTL+AR +
Sbjct: 245 LGIKHVKGMLLFGPPGTGKTLMARQI 270
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 31.9 bits (69), Expect = 0.61
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Frame = +2
Query: 563 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDAL--GIA------QPKGVLLYGPS 718
+ + + +++ + G D+Q +EI++ I + + PE++D + G +P+ VL GP
Sbjct: 311 DSMDEISWDNIAGYDQQKREIEDTILMALHSPEVYDDIVRGTRSKFESNRPRAVLFEGPP 370
Query: 719 GPWKDIISSCCR 754
G K +SC R
Sbjct: 371 GTGK---TSCAR 379
>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 495
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 578 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWK 730
ST++ + K+I + +E +K E + +G A +G LLYGP G K
Sbjct: 206 STFDTLAMDPNAKKKIIDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGK 256
>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 576
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 578 STYEMVGGLDKQIK-EIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWK 730
ST++ + +D +K + E ++ VK + + +G A +G LLYGP G K
Sbjct: 262 STFKTLA-MDSDVKTSVMEDLDKFVKRRDFYKRVGKAWKRGYLLYGPPGTGK 312
>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 494
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 578 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWK 730
ST+E + K+I + +E +K E + +G A +G LLYGP G K
Sbjct: 207 STFETLAMDPGAKKKIIDDMERFLKRREFYKRVGKAWKRGYLLYGPPGTGK 257
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 678 GLRNQKESYCM-GLPGPGKTLLARAVAHHMRCTFIRGS 788
G+R + M G PG GKTLLA+AVA TF S
Sbjct: 267 GIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 304
>At1g08270.1 68414.m00913 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 126
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 557 MVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELF 667
++ + P+ + +V GL+ + +KE + LPV P+ F
Sbjct: 83 IIREKPNVKWTVVAGLESAKQALKEAVILPVNFPQFF 119
>At5g45260.1 68418.m05555 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1187
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 711 GLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRK 827
G+PG GKT LA+AV M F I + Y K I K
Sbjct: 179 GMPGIGKTTLAKAVFDQMSSAFDASCFIED-YDKSIHEK 216
>At4g15110.1 68417.m02322 cytochrome P450 97B3, putative (CYP97B3)
identical to Cytochrome P450 97B3 (SP:O23365)
[Arabidopsis thaliana]
Length = 580
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +1
Query: 175 EVDTVKGEGFRPYY-ITKIEELQLIVAENLKIFVVFKPSVMNSTLK 309
E+D V G+G Y + K+E ++LIV E L++F P ++ TLK
Sbjct: 388 EIDAVLGQGPPTYESMKKLEYIRLIVVEVLRLFPQ-PPLLIRRTLK 432
>At3g16030.1 68416.m02027 lectin protein kinase family protein
contains Pfam domains PF00069: Protein kinase domain and
PF01453: Lectin (probable mannose binding)
Length = 850
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 235 LQLIVAENLKIFVVFKPSVMNSTLKFVCYARSFSSC 342
LQ I + +K V PSV L++ CY ++F +C
Sbjct: 266 LQKINLDGVKKHVHCSPSVFGEELEYGCYQQNFRNC 301
>At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1195
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +2
Query: 572 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGI 682
P++ E+VG L +++KE+KE ++L K + LG+
Sbjct: 214 PENQIELVG-LSQRLKELKEKLDLSRKETRIVGVLGM 249
>At5g03930.1 68418.m00373 expressed protein
Length = 177
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 890 ERXGLVSLAHYEEPLGTHFGCLSPNKFLVPISDPRTTYE 774
E +V + + E PLGT+FG L+ N L P++ T E
Sbjct: 97 EDEAVVRIVNAERPLGTNFGWLN-NDLLAPLAHRGLTAE 134
>At3g50940.1 68416.m05577 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 578 STYEMVGGLDKQIKE-IKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWK 730
ST+ + LD ++K+ + E ++ V+ + +G A +G LLYGP G K
Sbjct: 210 STFRTLA-LDPEVKKNLVEDLDRFVQRKGFYGRVGKAWKRGYLLYGPPGTGK 260
>At3g28570.1 68416.m03567 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 659 ELFDALGIAQPKGVLLYGPSGPWK 730
E +D +G A +G LLYGP G K
Sbjct: 226 EYYDRIGKAWKRGYLLYGPPGTGK 249
>At1g68780.1 68414.m07862 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to disease
resistance protein [Lycopersicon esculentum]
gi|3894383|gb|AAC78591
Length = 432
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 506 YLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELF-DALGI 682
YL LP +++ L +L +++ + GGL K+I+E+ ++EL + + L D GI
Sbjct: 254 YLEGKLPRELESLKNLTLLDL---RNNRLSGGLSKEIQEMTSLVELVLSNNRLAGDLTGI 310
>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
contains Pfam profile: ATPase family PF00004
gene_id:K17E7.100 contains Pfam profile: ATPase family
PF00004
Length = 533
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 578 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWK 730
ST++ + D + + E ++ V + + +G A +G LLYGP G K
Sbjct: 208 STFDTMAMNDDLKRSMIEDLDRFVGRKDFYKRVGKAWKRGYLLYGPPGTGK 258
>At3g10380.1 68416.m01244 exocyst complex component-related
identical to Probable exocyst complex component Sec8
(Swiss-Prot:Q93YU5) [Arabidopsis thaliana]; weak
similarity to Exocyst complex component Sec8 (rSec8)
(Swiss-Prot:Q62824) [Rattus norvegicus]
Length = 1053
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 451 LILTMSRPIVVSLFATKAILTQNTTQQSRSSCVAHDGRESAGLYLRNGR 597
+I RP + + +K TT S+S+C D +AGL+L G+
Sbjct: 357 IICQKLRPTIHEIIISKIKAHLETTNLSKSACSQGDRSVAAGLHLIKGQ 405
>At2g46620.1 68415.m05815 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 491
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 620 EIKEVIELPVKHPELFDALGIAQPKGVLLYGPSGPWK 730
++K +E +K + ++ LG + LLYGPSG K
Sbjct: 208 KVKSDLESFLKGKQYYNRLGRVWKRSYLLYGPSGTGK 244
>At2g03760.1 68415.m00336 steroid sulfotransferase, putative strong
similarity to steroid sulfotransferases from [Brassica
napus] GI:3420008, GI:3420004, GI:3420006; contains Pfam
profile PF00685: Sulfotransferase domain
Length = 326
Score = 27.9 bits (59), Expect = 10.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 746 CCRSPHEVYFHTWFXDQKLVPK 811
CCR+P +++ W +KL P+
Sbjct: 160 CCRNPKDMFVSLWHFGKKLAPE 181
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 27.9 bits (59), Expect = 10.0
Identities = 22/62 (35%), Positives = 30/62 (48%)
Frame = +3
Query: 711 GLPGPGKTLLARAVAHHMRCTFIRGSXIRNWYQKFIGRKAAKMGAERLFVMGQRNKPPSF 890
G PG GKTL AR +A F+ S + G AAK+ +F + +RN P+F
Sbjct: 533 GPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSG--AAKI--NEMFSIARRN-APAF 587
Query: 891 XF 896
F
Sbjct: 588 VF 589
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 614 IKEIKEVIELPVKHPELFD--ALGIAQPKGVLLYGPSGPWKDII 739
+ E E+ + + F+ +L ++Q + VLLYGPSG K +
Sbjct: 326 VNSFSEPFEIHSRVKKSFEMVSLAVSQKRPVLLYGPSGSGKSAL 369
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,955,826
Number of Sequences: 28952
Number of extensions: 359419
Number of successful extensions: 1266
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2178500352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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