Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0121
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27410.1 68415.m03312 hypothetical protein contains Pfam prof...    29   1.9  
At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family...    29   3.3  
At1g79800.1 68414.m09316 plastocyanin-like domain-containing pro...    29   3.3  
At5g19810.1 68418.m02354 proline-rich extensin-like family prote...    28   5.8  
At4g37710.1 68417.m05338 VQ motif-containing protein contains PF...    28   5.8  
At3g16730.1 68416.m02136 expressed protein ; expression supporte...    28   5.8  
At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa...    28   5.8  
At4g09450.1 68417.m01555 myb family transcription factor contain...    27   7.7  
At4g00060.1 68417.m00006 nucleotidyltransferase family protein c...    27   7.7  
At1g50600.1 68414.m05683 scarecrow-like transcription factor 5 (...    27   7.7  

>At2g27410.1 68415.m03312 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 309

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +2

Query: 284 PYDDFRLPNGKICTS----ESEFGNSVPSGPQLSTGASARTLPSPAARCIPPPR 433
           P   FR   GK+C +     S  GNS+P G   ST   +  +P P    IPP R
Sbjct: 242 PLWSFRSGTGKLCFALTPKNSGRGNSLPGGDGASTSGESGQVPLP----IPPAR 291


>At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 162

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 388 PNTPITSCTMHPSPPPANRSSGEY 459
           P+TP T+C   PSPP +   S  Y
Sbjct: 58  PSTPTTACPPPPSPPSSGGGSSYY 81


>At1g79800.1 68414.m09316 plastocyanin-like domain-containing
           protein
          Length = 192

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 393 HSHHQLHDASLPPACEQVFGGISPLRTLS 479
           H HH  HDAS+PP+   +    SP  + S
Sbjct: 136 HQHHD-HDASMPPSMSPLSNSASPYASAS 163


>At5g19810.1 68418.m02354 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 249

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 364 AAVHRCKRPNTPITSCTMHPSPPPANRSSGEYRRSGP 474
           AA ++   P  P     ++P PPP  +++  Y+RS P
Sbjct: 187 AAYYKKTPPPPPYKYGRVYPPPPPPPQAARSYKRSPP 223


>At4g37710.1 68417.m05338 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 123

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -2

Query: 245 QVEAVSFNVAHLKFRCAEDHETVQ--*ANTDSVAWLTESEHILFDDRESFGS-SVQNSLS 75
           +VE V+F V   +   A +HETVQ     T   A    S    FD   S+G  S QN  +
Sbjct: 60  RVEPVNFKVLVQRLTGAPEHETVQAKPLKTSDDAAKQSSSSFAFDPSSSWGDFSFQNPAN 119

Query: 74  I 72
           I
Sbjct: 120 I 120


>At3g16730.1 68416.m02136 expressed protein ; expression supported
           by MPSS
          Length = 695

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 382 KRPNTPITSCTMHPSPPPANRSS 450
           KR  +PIT    H SPPP  R++
Sbjct: 618 KRAKSPITKGKSHESPPPKKRNT 640


>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
           family protein similar to C-terminal zinc-finger
           [Glycine max] GI:558543; contains Pfam profile: PF00097
           zinc finger, C3HC4 type (RING finger)
          Length = 486

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +2

Query: 296 FRLPNGKICTSESEFGNSVPSGPQLSTGASARTLPSPAARCIPPPRLRTGLRGNIAA--Q 469
           F+  + ++    S++  +  S PQL+T  +A     P     P P  +  +R    A   
Sbjct: 126 FKRKSSEVIPGNSQYPVAPCSFPQLNTSETA-PFSFPHFGTYPQPLDQRSVRNRAGAATM 184

Query: 470 DPVIVHGHVAF 502
           DP++ HGH  F
Sbjct: 185 DPLLSHGHNNF 195


>At4g09450.1 68417.m01555 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 200

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 57  IELKENGQAILNGASKGFPIIEKDVFAFRQPSNRIGVGSLYGLMVFC 197
           ++L E G++  NG   G P  E++   F +  N+ G G    +  +C
Sbjct: 74  VKLTEAGESKGNGKKTGIPWSEEEQRLFLEGLNKFGKGDWKNISRYC 120


>At4g00060.1 68417.m00006 nucleotidyltransferase family protein
           contains Pfam profile: PF01909 nucleotidyltransferase
           domain
          Length = 839

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +1

Query: 376 RCKRPNTPITSCTMH-PSPPPANRSSGEYRRSG 471
           R KRP +P+  C    P PPP +  S    R G
Sbjct: 335 RIKRPPSPVVLCVPRAPRPPPPSPVSNSRARRG 367


>At1g50600.1 68414.m05683 scarecrow-like transcription factor 5
           (SCL5) similar to SCARECROW GB:AAB06318 GI:1497987 from
           [Arabidopsis thaliana]
          Length = 597

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 1/124 (0%)
 Frame = +3

Query: 24  ALILEDKSGAIIELK-ENGQAILNGASKGFPIIEKDVFAFRQPSNRIGVGSLYGLMVFCT 200
           +L+L+D   A++E   +N      G  +   ++   ++   +  +R   G L G++  C 
Sbjct: 179 SLMLKDLETAMMEPDVDNSYNNQGGFGQQHGVVSSAMYRSMEMISR---GDLKGVLYECA 235

Query: 201 SKLEVCYIEANGFYLGKLAVFSETVTTSLTMTSGYLMERSALRKASSVTAYRLARSCPQV 380
             +E   +E   + + +L          +     Y++E    R ASS ++   A  C   
Sbjct: 236 KAVENYDLEMTDWLISQLQQMVSVSGEPVQRLGAYMLEGLVARLASSGSSIYKALRCKDP 295

Query: 381 QAPE 392
             PE
Sbjct: 296 TGPE 299


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,451,468
Number of Sequences: 28952
Number of extensions: 313992
Number of successful extensions: 1130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)