Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0105
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52950.1 68418.m06570 expressed protein ; expression supporte...    29   2.7  
At1g01300.1 68414.m00046 aspartyl protease family protein contai...    28   4.7  
At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containi...    27   6.2  

>At5g52950.1 68418.m06570 expressed protein ; expression supported
           by MPSS
          Length = 945

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 24/69 (34%), Positives = 34/69 (49%)
 Frame = -3

Query: 254 FSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLLGFVLATSSGLSP 75
           FSS  SL +    S L++  SPLSF    L      S  R  +A  + G+ L +SS ++ 
Sbjct: 59  FSSLSSLLSSSKLSSLSISSSPLSFD---LPNPTLVSLKRAIDA--VKGYELRSSSTVAT 113

Query: 74  VSSPTKVRV 48
            +SP  V V
Sbjct: 114 AASPRGVNV 122


>At1g01300.1 68414.m00046 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 485

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 20/47 (42%), Positives = 22/47 (46%)
 Frame = -3

Query: 284 CF*VLQAPVTFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRS 144
           CF  L  P +FSS PS  T    S      SP+SF PD  S S   S
Sbjct: 13  CFFFLSLP-SFSSLPSFQTLFPNSHSLPCASPVSFQPDSDSESLLES 58


>At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 500

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 172 SGEKLSGLCLRVNLLVEPFVAS 237
           SG+++ G CLR NL+ + +VA+
Sbjct: 146 SGKEVHGFCLRKNLICDAYVAT 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,320,477
Number of Sequences: 28952
Number of extensions: 233928
Number of successful extensions: 628
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)