Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0103
         (646 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27380.1 68418.m03269 glutathione synthetase (GSH2) non-conse...    46   3e-05
At4g26990.1 68417.m03883 expressed protein                             29   2.6  
At5g09670.2 68418.m01119 loricrin-related contains weak similari...    28   6.1  
At5g09670.1 68418.m01118 loricrin-related contains weak similari...    28   6.1  
At4g19900.1 68417.m02916 glycosyl transferase-related contains P...    27   8.1  

>At5g27380.1 68418.m03269 glutathione synthetase (GSH2)
           non-consensus AT donor splice site at exon 6, AC
           acceptor splice site at exon 7; identical to
           Swiss-Prot:P46416 glutathione synthetase, chloroplast
           precursor (Glutathione synthase) (GSH synthetase)
           (GSH-S) [Arabidopsis thaliana]
          Length = 478

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 19/32 (59%), Positives = 23/32 (71%)
 Frame = +3

Query: 189 FVLKPQREGGGNNVYGSEVRDA*LACDTAGSE 284
           FV+KPQREGGGNN+YG +VR+  L     G E
Sbjct: 364 FVMKPQREGGGNNIYGDDVRENLLRLQKEGEE 395


>At4g26990.1 68417.m03883 expressed protein
          Length = 474

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 323 PEAAISSPSVCTRLAPGCVACESRVPHFRTVHIIPATFPL 204
           PEA I SPS   RL+P  V     +PH   +  IP+  P+
Sbjct: 256 PEAKIFSPSYTKRLSPSPVG----MPHVGNIAYIPSNTPM 291


>At5g09670.2 68418.m01119 loricrin-related contains weak similarity
           to Loricrin (Swiss-Prot:P23490) [Homo sapiens]
          Length = 546

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 492 GEGINKTSCNKNQTRKVIFCVITGGRTSCD 581
           G+   K  CNK    K  FC   GG   C+
Sbjct: 178 GQRCQKPGCNKGAESKTTFCKTHGGGKRCE 207


>At5g09670.1 68418.m01118 loricrin-related contains weak similarity
           to Loricrin (Swiss-Prot:P23490) [Homo sapiens]
          Length = 546

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 492 GEGINKTSCNKNQTRKVIFCVITGGRTSCD 581
           G+   K  CNK    K  FC   GG   C+
Sbjct: 178 GQRCQKPGCNKGAESKTTFCKTHGGGKRCE 207


>At4g19900.1 68417.m02916 glycosyl transferase-related contains Pfam
           profiles PF01535: PPR repeat, PF04572: Alpha
           1,4-glycosyltransferase conserved region, PF04488:
           Glycosyltransferase sugar-binding region containing DXD
           motif; several hypothetical proteins - Arabidopsis
           thaliana
          Length = 1302

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -3

Query: 344 ELNDRSLPEAAISSPSVCTRLAPGCVACESRVPHFRTVHIIPATFPLRLQYES 186
           E +D SLP +  SSPS C   +   + C S   + R  H++ +   + L +++
Sbjct: 638 ESSDLSLPSSPSSSPSQCLVKSVCSLVCTS---YLRQNHVVSSPHRVNLDFDA 687


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,149,293
Number of Sequences: 28952
Number of extensions: 313059
Number of successful extensions: 666
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)