Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0100
(601 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 74 8e-14
At5g25780.1 68418.m03060 eukaryotic translation initiation facto... 73 2e-13
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 42 2e-04
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 39 0.002
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 36 0.015
At2g47310.1 68415.m05906 flowering time control protein-related ... 36 0.020
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 34 0.083
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 33 0.14
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 33 0.14
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 31 0.44
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 31 0.58
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 31 0.58
At1g74800.1 68414.m08666 galactosyltransferase family protein co... 30 1.0
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 30 1.3
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 30 1.3
At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 ... 30 1.3
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 29 1.8
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 29 1.8
At1g62870.1 68414.m07099 expressed protein 29 1.8
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 29 1.8
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 29 2.4
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 29 3.1
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 29 3.1
At4g30810.1 68417.m04365 serine carboxypeptidase S10 family prot... 28 4.1
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 28 4.1
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 28 4.1
At1g12380.1 68414.m01431 expressed protein 28 4.1
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 28 5.4
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 28 5.4
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 28 5.4
At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A / s... 27 7.2
At2g18915.2 68415.m02208 F-box family protein / LOV kelch protei... 27 7.2
At2g18915.1 68415.m02207 F-box family protein / LOV kelch protei... 27 7.2
At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ... 27 9.5
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 27 9.5
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 27 9.5
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 27 9.5
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 73.7 bits (173), Expect = 8e-14
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Frame = +3
Query: 255 KLQSVINKIFSKFGKIVNE--YYPTT-ENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDK 425
KL+ V+ KI+++ G I + P + +T GY F+E++ PQ A A + ++ KLDK
Sbjct: 73 KLEGVVKKIYNQLGVIKENGLWMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKLDK 132
Query: 426 QHTFLVNLFTDFQKYSDIPKEWEPP 500
H F VN+F DF + ++ +EWEPP
Sbjct: 133 SHIFAVNMFDDFDRLMNVKEEWEPP 157
>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3
subunit 9, putative / eIF-3 eta, putative / eIF3b,
putative nearly identical to SP|Q9C5Z1 Eukaryotic
translation initiation factor 3 subunit 9 (eIF-3 eta)
(eIF3 p110) (eIF3b) {Arabidopsis thaliana}
Length = 714
Score = 72.5 bits (170), Expect = 2e-13
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Frame = +3
Query: 255 KLQSVINKIFSKFGKIVNE--YYPTT-ENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDK 425
KL+ V+ KI+++ G I P + +T GY F+E++ PQ A A + ++ KLDK
Sbjct: 74 KLEGVVKKIYNQLGVIKENGLLMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKLDK 133
Query: 426 QHTFLVNLFTDFQKYSDIPKEWEPP 500
H F VN+F DF + ++ +EWEPP
Sbjct: 134 SHIFAVNMFDDFDRLMNVKEEWEPP 158
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +3
Query: 261 QSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCK 416
+ ++ + F++FGKIV+ EN L GY F+ + NP++A A + N K
Sbjct: 214 EDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTK 265
Score = 35.5 bits (78), Expect = 0.027
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 264 SVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 410
+V+ +F KFG IV+ T E+G + GY F+++ A A++ N+
Sbjct: 126 AVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNS 174
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/79 (24%), Positives = 40/79 (50%)
Frame = +3
Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 449
I +F K+G +++ + G +F+E ++P+ AA A+K+ +C+ + + V+
Sbjct: 110 IRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRR-LKVDY 168
Query: 450 FTDFQKYSDIPKEWEPPAP 506
+K + P+E P P
Sbjct: 169 AKTKKKKTYAPRETPSPVP 187
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 36.3 bits (80), Expect = 0.015
Identities = 18/75 (24%), Positives = 37/75 (49%)
Frame = +3
Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 449
+NK+F +FG + G + G+ F+ + N +AA AV A N D + F+
Sbjct: 240 LNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKA 299
Query: 450 FTDFQKYSDIPKEWE 494
++ +++ +++E
Sbjct: 300 QKKSERETELKQKFE 314
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 35.9 bits (79), Expect = 0.020
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +3
Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407
+N++FS++G I + Y + + GY F+++S + A A+KA N
Sbjct: 223 VNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALN 268
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 33.9 bits (74), Expect = 0.083
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +3
Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 440
+ ++FS FG+I + P G GY F+E+ Q A A KA + +H L
Sbjct: 685 LRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKALASTHFYGRHLVL 741
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 33.1 bits (72), Expect = 0.14
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 261 QSVINKIFSKFGKIVNEYYPTTE-NGLTTGYIFLEYSNPQNAAEAVKATNNCKL 419
+ ++ ++F + G +VN Y P L Y F+EY + ++A A+K N KL
Sbjct: 38 EELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKL 91
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +3
Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 449
+ ++FS+FG I + NG++ G F+E+S + A++A+ N + + ++
Sbjct: 239 LEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLA 298
Query: 450 FTDFQKYSDIPKEWE--PPAPH 509
Q + ++ PP+PH
Sbjct: 299 QCKEQHKLHLQTQFNNPPPSPH 320
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +3
Query: 279 IFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQH 431
+FS FGK+++ +G++ GY F+++ + + A N + QH
Sbjct: 50 MFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQH 100
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 31.5 bits (68), Expect = 0.44
Identities = 13/57 (22%), Positives = 32/57 (56%)
Frame = +3
Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 440
++ +FS++G + + G + G+ F+ + NP+NA +A+++ +L + F+
Sbjct: 218 LHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFV 274
Score = 31.1 bits (67), Expect = 0.58
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +3
Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 422
+ +IF +G+IV+ ENG + G+ F+ +SN + + +A + N +D
Sbjct: 320 LREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVD 370
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 31.1 bits (67), Expect = 0.58
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +3
Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKL 419
+ K+F FG + P E GL G+ F++++ ++A A+ ++
Sbjct: 301 LRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLNGQLEI 350
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 31.1 bits (67), Expect = 0.58
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 270 INKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQH 431
I F FG+I N +G GY +EY + A A+ A N +L Q+
Sbjct: 111 ITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQN 165
>At1g74800.1 68414.m08666 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 672
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = -1
Query: 235 PADTRLRLQRFHNRQIP*ASVLRYPPIILLQESLRNPLGRQNQVLLQSSVPHCHFEELDS 56
P D RL++ +N Q P ++ PP+ + + NP L+Q+ V H L S
Sbjct: 58 PLDALSRLEKLNNEQEPQVEIIPNPPLEPVSYPVSNPTIVTRTDLVQNKVREHHRGVLSS 117
Query: 55 L 53
L
Sbjct: 118 L 118
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 279 IFSKFGKIVNEYYP-TTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 422
+F+K+GK+V+ + P G + G+ F+ Y A +AV+ + +D
Sbjct: 35 LFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVD 83
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 279 IFSKFGKIVNEYYP-TTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 422
+F+K+GK+V+ + P G + G+ F+ Y A +AV+ + +D
Sbjct: 35 LFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVD 83
>At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3
(ADO3) E3 ubiquitin ligase SCF complex F-box subunit;
identical to FKF1 GI:6960305 and Adagio 3 GI:13487072
from [Arabidopsis thaliana]; contains Pfam profiles
PF01344: Kelch motif, PF00785: PAC motif and PF00646:
F-box domain; contains TIGRfam profile TIGR00229: PAS
domain S-boxidentical to cDNA Adagio 3 (ADO3)
GI:13487071
Length = 619
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 432 TFLVNLFTDFQKYSDIPKEWEPPA 503
TFL++L TD + +IP W PP+
Sbjct: 438 TFLLDLTTDKPTWKEIPTSWAPPS 461
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 270 INKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407
+ K+FS+FG++ N + + GY ++ +++ ++A AV+A N
Sbjct: 74 LKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 120
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 270 INKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407
+ K+FS+FG++ N + + GY ++ +++ ++A AV+A N
Sbjct: 93 LKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139
>At1g62870.1 68414.m07099 expressed protein
Length = 796
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 396 KATNNCKLDKQHTFLVNLFTDFQKYSDIPKEWEPPAPHHSRCSQICN 536
KA N L+ QH ++VNL FQ ++ + +++ P SQ C+
Sbjct: 366 KALRN--LESQHQWMVNLSCQFQGFNSLIRDFVKELPLFKSVSQSCS 410
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 279 IFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407
+F +V+ +N + GY ++ +SNP +A A++A N
Sbjct: 68 LFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN 110
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +3
Query: 282 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 440
FS FG I++ G + GY F+++ ++A A+ N ++ + F+
Sbjct: 156 FSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 279 IFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAV 395
+FS FGK++ G + G+ F+E+ + +A A+
Sbjct: 36 MFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAM 74
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +3
Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 422
I ++FS+ G++ +NG +G + Y +A +A+K NN LD
Sbjct: 109 IRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLD 159
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +3
Query: 261 QSVINKIFSKFGKIVNEYYPTTE-NGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTF 437
+S I + F +G I + T + GY F+EY + ++ A K + K+D +
Sbjct: 151 ESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGR--- 207
Query: 438 LVNLFTDFQKYSDIPKEWEP 497
+ D ++ +P W P
Sbjct: 208 --RVLVDVERGRTVP-NWRP 224
>At4g30810.1 68417.m04365 serine carboxypeptidase S10 family protein
similar to serine-type carboxypeptidase (SP:P55748)
[Hordeum vulgare]
Length = 479
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 442 TKNVCCLSNLQLFVAFTASAAFCGLLYSRKMYPVVS 335
T+ CCL N + +AF A+A C S+K VS
Sbjct: 4 TRGSCCLVNALIAIAFLATAHLCEAGLSQKEQDKVS 39
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 267 VINKIFSKFGKI-VNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407
V++K F++F + + G T GY F+ + NP + A A+K N
Sbjct: 152 VLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEMN 199
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/49 (26%), Positives = 29/49 (59%)
Frame = +3
Query: 264 SVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 410
S + ++FSKFG++ + +GY F+ + + ++A +A++ T+N
Sbjct: 16 SDLERLFSKFGRVKRV-------DMKSGYAFVYFEDERDAEDAIRRTDN 57
>At1g12380.1 68414.m01431 expressed protein
Length = 793
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 396 KATNNCKLDKQHTFLVNLFTDFQKYSDIPKEWEPPAPHHSRCSQIC 533
KA N L+ QH ++VNL FQ + + K++ P SQ C
Sbjct: 379 KALRN--LESQHQWMVNLSCQFQGLNSLIKDFVKELPLFKSVSQNC 422
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407
+ +IF +FG + + Y E + G F++YS+ + A A+ N
Sbjct: 227 VEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407
+ +IF +FG + + Y E + G F++YS+ + A A+ N
Sbjct: 227 VEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 282 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 440
FS FG I++ G + GY F+++ + A A+ N L+ + F+
Sbjct: 152 FSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 204
>At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A /
spliceosomal protein U1A / U1snRNP-specific protein
identical to GB:Z49991 U1snRNP-specific protein
[Arabidopsis thaliana]
Length = 250
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 255 KLQSVINKIFSKFGKIVNEY-YPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 410
+L+ +N +FS+FGKI+ + T ++ G ++ + N ++A+ A+ NN
Sbjct: 33 ELKKSLNAVFSQFGKILEILAFKTFKH---KGQAWVVFDNTESASTAIAKMNN 82
>At2g18915.2 68415.m02208 F-box family protein / LOV kelch protein 2
(LKP2) / adagio 2 (ADO2) E3 ubiquitin ligase SCF complex
F-box subunit; identical to Adagio 2 GI:13487070 from
[Arabidopsis thaliana]; contains Pfam profiles PF01344:
Kelch motif and PF00646: F-box domain; identical to cDNA
LOV kelch protein 2 GI:18146957; identical to cDNA
Adagio 2 (ADO2) GI:13487069
Length = 611
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 432 TFLVNLFTDFQKYSDIPKEWEPPA 503
TFL++L D + +IP W PP+
Sbjct: 427 TFLLDLSMDIPAWREIPVPWTPPS 450
>At2g18915.1 68415.m02207 F-box family protein / LOV kelch protein 2
(LKP2) / adagio 2 (ADO2) E3 ubiquitin ligase SCF complex
F-box subunit; identical to Adagio 2 GI:13487070 from
[Arabidopsis thaliana]; contains Pfam profiles PF01344:
Kelch motif and PF00646: F-box domain; identical to cDNA
LOV kelch protein 2 GI:18146957; identical to cDNA
Adagio 2 (ADO2) GI:13487069
Length = 601
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 432 TFLVNLFTDFQKYSDIPKEWEPPA 503
TFL++L D + +IP W PP+
Sbjct: 417 TFLLDLSMDIPAWREIPVPWTPPS 440
>At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 130
Score = 27.1 bits (57), Expect = 9.5
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = +3
Query: 270 INKIFSKFGKIVNEYY 317
+ K+FS+FG++ NE+Y
Sbjct: 74 LKKVFSEFGQVTNEHY 89
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/32 (31%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Frame = +3
Query: 345 GYIFLEYSNPQNAAEAVKA---TNNCKLDKQH 431
GY FL++ +P++A +A++A N ++++ H
Sbjct: 39 GYAFLDFEDPRDARDAIRALDGKNGWRVEQSH 70
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +3
Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 422
I IF K+G+IV+ Y F+E+ + ++A +A+K + LD
Sbjct: 23 IEDIFYKYGRIVDIELKVPPR--PPCYCFVEFEHSRDAEDAIKGRDGYNLD 71
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 255 KLQSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407
K+ +I+ F G++V+ T NGL F+E+++ A +A+ N
Sbjct: 576 KMPDIID-FFKDVGQVVSVQLTTKRNGLRLSTGFVEFASANEAKKALDMKN 625
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,807,395
Number of Sequences: 28952
Number of extensions: 259566
Number of successful extensions: 723
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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