Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0088
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1 ...    30   1.8  
At5g19180.1 68418.m02284 ubiquitin activating enzyme, putative (...    27   9.5  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    27   9.5  

>At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1
           subunit-related contains similarity to Swiss-Prot:P80387
           5'-AMP-activated protein kinase, beta-1 subunit (AMPK
           beta-1 chain) (AMPKb) (40 kDa subunit) [Sus scrofa]
          Length = 591

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 326 QPLGLTVTTDEHGQLIVARILAGSAAAKQALVSVGDVL 439
           +PLG+       G++ V  I  GS A K  ++ VGD L
Sbjct: 83  KPLGIRFALSADGKIFVHAIKKGSNAEKARIIMVGDTL 120


>At5g19180.1 68418.m02284 ubiquitin activating enzyme, putative
           (ECR1) identical to putative ubiquitin activating enzyme
           E1 [Arabidopsis thaliana] GI:2952433; similar to NEDD8
           activating enzyme [Mus musculus] GI:17061821
          Length = 454

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = -2

Query: 256 LFENSIRSGNSFGIN--LSSIPDPLSNQILP-IWS*ASINALKCALDTMIASSACSIVRI 86
           +++ +IR    FGI     S+   +   I+P I S  +I +  CAL+T+   SACS   +
Sbjct: 256 VYDEAIRRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIVSACSKTLV 315

Query: 85  LFPRYS 68
            +  Y+
Sbjct: 316 NYLTYN 321


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = -2

Query: 127  DTMIASSACSIVRILFPRYSLSDLIMFTLPSDTGFTSR 14
            +T++ ++AC +++ +FPR  +   +MF LP+    T R
Sbjct: 2388 ETLLQTTACRVLQSVFPRKEIYYQVMF-LPNSVKDTMR 2424


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,428,247
Number of Sequences: 28952
Number of extensions: 349017
Number of successful extensions: 895
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)