Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0064
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21630.1 68415.m02573 transport protein, putative similar to ...    31   0.85 
At3g42670.1 68416.m04437 SNF2 domain-containing protein / helica...    29   2.0  
At5g51770.1 68418.m06419 protein kinase family protein contains ...    29   2.6  
At2g43320.1 68415.m05386 expressed protein                             29   3.4  
At3g51620.1 68416.m05658 expressed protein                             28   4.5  
At3g13690.1 68416.m01729 protein kinase family protein contains ...    28   6.0  
At4g22510.1 68417.m03249 hypothetical protein                          27   7.9  

>At2g21630.1 68415.m02573 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 761

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 282 YLSITQGPLPSYAHTPGTTIELTCEAAGSPAPSVHWFKNDS 404
           Y S+    LP       TT+E  C++  SP+P V  F  D+
Sbjct: 95  YSSVADNNLPPELFPHSTTVEYLCDSFSSPSPPVFLFVVDT 135


>At3g42670.1 68416.m04437 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to SP|P41410
           DNA repair protein rhp54 (RAD54 homolog)
           {Schizosaccharomyces pombe}; contains PFam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 1256

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +1

Query: 235 NSIENGVKQNLMDLINIYRSRKAPY 309
           NS+  GV  NLMD I+ YRS+ A Y
Sbjct: 400 NSLCGGVSGNLMDEIDKYRSKAAKY 424


>At5g51770.1 68418.m06419 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 654

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +2

Query: 350 LRSCRISSTISTLVQERLFSLRVDVESNELID--SKPDIYCENFLQLFIVTAVRPLRMCT 523
           ++SC +SST S  ++  +  +  +   N + D   K D+Y    L L +V+  RPL +  
Sbjct: 498 VKSCGVSSTPS--MRGTMCYVAPECCGNNIDDVSEKSDVYSYGVLLLVLVSGRRPLEVTG 555

Query: 524 PAS 532
           PAS
Sbjct: 556 PAS 558


>At2g43320.1 68415.m05386 expressed protein
          Length = 351

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = -1

Query: 508 RSYGGHYEELKEILAIXXXXXXXXXXXXXXDS*TEESFLNQCT--DGA--GDPAASQVNS 341
           R Y G +EEL  +L+I               S +EE F++ C+  DG+  G P  S   S
Sbjct: 189 RFYAGEWEELSTVLSIIRTDVLEPSIPAMNLSFSEEDFMDGCSSQDGSITGQPDFSSRRS 248

Query: 340 IVVPGVCAYD 311
             + G  A++
Sbjct: 249 RKLSGSRAWE 258


>At3g51620.1 68416.m05658 expressed protein
          Length = 755

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 524 PASPPRASRLREPTLWSTIQDSASELSER 610
           P  PP  S L +P LW  ++++  E+ E+
Sbjct: 19  PLLPPPRSPLNQPELWMRVEEATREIIEQ 47


>At3g13690.1 68416.m01729 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 753

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 178 GSCQSAHLNKHIKLLSDIDNSIENGVKQNLMDLINIYRSRK 300
           G C S H   H + L +I + + +   Q ++ L ++Y   K
Sbjct: 78  GDCASGHRKSHSEALPEIKSDLTDTCSQMILQLHDVYDPNK 118


>At4g22510.1 68417.m03249 hypothetical protein 
          Length = 125

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 500 VRPLRMCTPASPPRASRLREPTLWSTIQDSASEL-SERAKLFR*TS 634
           VR +R  T    P++ RLR  T W+ ++   + L +  A+L+R T+
Sbjct: 39  VREMRPSTLTQIPKSDRLRGHTGWAEVKPKKTRLKAVEARLYRQTT 84


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,388,718
Number of Sequences: 28952
Number of extensions: 234140
Number of successful extensions: 621
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)