SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2019/10/06
 
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0031
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33020.1 68415.m04047 leucine-rich repeat family protein cont...    28   4.9  
At5g04730.1 68418.m00484 expressed protein ; expression supporte...    27   8.5  

>At2g33020.1 68415.m04047 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 864

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 98  LGALSLLMLVRLAHRKLKTSLP 33
           LG+LS L+ + +AH KLK  +P
Sbjct: 757 LGSLSFLVYISVAHNKLKGEIP 778


>At5g04730.1 68418.m00484 expressed protein ; expression supported
           by MPSS
          Length = 321

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +1

Query: 79  SNDKAPRNILVERGRLELPGPVLEAAGSQDWCSDTRERTARWYRKVEEQI 228
           S DK   NIL   GRL  P  + + +G+    +   +R ++W+++VE  +
Sbjct: 79  SYDKGNNNILHIAGRLSTPDQLSKISGA----ALKMQRESQWFKEVESLV 124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,642,133
Number of Sequences: 28952
Number of extensions: 274007
Number of successful extensions: 757
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

The construction of this database has been supported by
Grant-in-Aid for Publication of Scientific Research Results,
JSPS, Japan (1999-2003, 2005-2018).

The EST sequencing was supported by the Genome Analysis Program,National Bioresource Project (NBRP),
Grants-in-Aid for Scientific Research, MEXT,and the Agrigenome Program, NIAS/MAFF.
The maintenance and distribution of the DNA clones are supported by the National Bioresource Project (NBRP).