Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0131
(751 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 110 1e-24
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 110 1e-24
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 108 4e-24
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 108 4e-24
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 108 4e-24
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 107 6e-24
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 105 3e-23
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 105 3e-23
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 103 2e-22
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 102 2e-22
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 102 2e-22
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 100 2e-21
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 100 2e-21
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 97 1e-20
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 91 5e-19
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 68 2e-18
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 72 4e-13
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 52 9e-12
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 64 7e-11
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 64 7e-11
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 64 9e-11
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 61 9e-10
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 60 1e-09
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 45 4e-09
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 58 6e-09
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 58 6e-09
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 58 6e-09
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 58 6e-09
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 58 6e-09
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 58 8e-09
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 58 8e-09
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 57 1e-08
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 56 3e-08
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 55 6e-08
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 53 2e-07
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 53 2e-07
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 53 2e-07
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 53 2e-07
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 53 2e-07
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 53 2e-07
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 53 2e-07
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 53 2e-07
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 52 4e-07
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 52 4e-07
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 52 4e-07
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 52 4e-07
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 52 4e-07
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 52 4e-07
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 52 5e-07
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 52 5e-07
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 51 7e-07
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 51 7e-07
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 51 7e-07
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 51 7e-07
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 51 9e-07
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 50 1e-06
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 50 1e-06
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 50 1e-06
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 50 1e-06
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 50 2e-06
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 50 2e-06
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 50 2e-06
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 50 2e-06
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 50 2e-06
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 49 3e-06
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 49 3e-06
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 49 3e-06
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 49 4e-06
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 49 4e-06
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 49 4e-06
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 49 4e-06
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 49 4e-06
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 48 5e-06
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 48 7e-06
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 48 9e-06
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 48 9e-06
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 48 9e-06
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 48 9e-06
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 48 9e-06
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 47 1e-05
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 47 1e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 47 2e-05
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 47 2e-05
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 47 2e-05
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 46 2e-05
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 46 2e-05
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 46 3e-05
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 46 3e-05
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 46 4e-05
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 46 4e-05
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 46 4e-05
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 45 5e-05
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 45 5e-05
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 45 5e-05
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 45 5e-05
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 45 6e-05
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 45 6e-05
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 45 6e-05
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 45 6e-05
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 44 8e-05
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 44 8e-05
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 44 8e-05
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 44 8e-05
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 44 1e-04
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 44 1e-04
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 44 1e-04
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 44 1e-04
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 43 2e-04
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 43 2e-04
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 43 2e-04
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 43 2e-04
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 42 3e-04
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 42 3e-04
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 42 3e-04
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 42 3e-04
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 42 3e-04
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 42 3e-04
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 42 4e-04
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 42 4e-04
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 41 0.001
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 40 0.001
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 40 0.001
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 40 0.001
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 40 0.001
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 40 0.002
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 40 0.002
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 40 0.002
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 39 0.003
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 39 0.003
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 39 0.004
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 39 0.004
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 39 0.004
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 39 0.004
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 39 0.004
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 38 0.005
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 38 0.005
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 38 0.007
At5g51300.2 68418.m06360 splicing factor-related contains simila... 38 0.007
At5g51300.1 68418.m06359 splicing factor-related contains simila... 38 0.007
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 38 0.007
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 38 0.007
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 38 0.009
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 38 0.009
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 38 0.009
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 38 0.009
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 38 0.009
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 37 0.012
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 37 0.016
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 37 0.016
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 36 0.022
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 36 0.022
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 36 0.022
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 36 0.022
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 36 0.029
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 36 0.029
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 36 0.029
At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing ... 36 0.038
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 35 0.050
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 35 0.066
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 35 0.066
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 35 0.066
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 34 0.088
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 34 0.088
At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ... 34 0.12
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 34 0.12
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 34 0.12
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 34 0.12
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ... 33 0.15
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 33 0.15
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 33 0.20
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 33 0.20
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 33 0.27
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 33 0.27
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 33 0.27
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 33 0.27
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 33 0.27
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 32 0.35
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 32 0.35
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 32 0.35
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 32 0.47
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 32 0.47
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 31 0.62
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 31 0.62
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 31 0.62
At2g33440.1 68415.m04099 splicing factor family protein similar ... 31 0.62
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 31 0.62
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 31 0.62
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 31 0.82
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil... 31 0.82
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 31 1.1
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 30 1.4
At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing ... 30 1.4
At1g67950.3 68414.m07762 RNA recognition motif (RRM)-containing ... 30 1.4
At1g67950.1 68414.m07761 RNA recognition motif (RRM)-containing ... 30 1.4
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 30 1.9
At4g16810.1 68417.m02538 expressed protein similar to vernalizat... 30 1.9
At2g47310.1 68415.m05906 flowering time control protein-related ... 30 1.9
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 30 1.9
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 30 1.9
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 29 2.5
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 29 2.5
At1g67950.2 68414.m07760 RNA recognition motif (RRM)-containing ... 29 2.5
At5g03480.1 68418.m00304 expressed protein ; expression support... 29 3.3
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 29 3.3
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 29 3.3
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 29 3.3
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil... 29 3.3
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 29 4.4
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 29 4.4
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 29 4.4
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 28 5.8
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 28 5.8
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ... 28 5.8
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 28 5.8
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 28 5.8
At1g04950.2 68414.m00493 TATA box-binding protein-associated fac... 28 5.8
At1g04950.1 68414.m00492 TATA box-binding protein-associated fac... 28 5.8
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 28 7.6
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 28 7.6
At4g24420.1 68417.m03501 RNA recognition motif (RRM)-containing ... 28 7.6
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 110 bits (264), Expect = 1e-24
Identities = 60/173 (34%), Positives = 96/173 (55%), Gaps = 25/173 (14%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
ET + +LR+HF YGE+ V D TGR RGF F++F P +D+V+ +H+I+ ++
Sbjct: 16 ETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE-KHSIDTRE 74
Query: 183 VDPKKAKARHG-------------------------KIFVGGLSSEISDDEIRNFFSEFG 287
VD K+A +R KIFVGGL ++D+E R +F +G
Sbjct: 75 VDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYG 134
Query: 288 TILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATP 446
+ +V + +D+ N+ +GF F++F+SE V+ +L + GK+V+VKRA P
Sbjct: 135 PVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALP 187
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/76 (38%), Positives = 48/76 (63%)
Frame = +3
Query: 213 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 392
GK+FVGG+S E +D++R F+ +G + + + DK + +GF F+ F V++ +L+
Sbjct: 6 GKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQ 65
Query: 393 TPKRTIGGKEVDVKRA 440
K +I +EVDVKRA
Sbjct: 66 -EKHSIDTREVDVKRA 80
Score = 55.6 bits (128), Expect = 3e-08
Identities = 25/77 (32%), Positives = 42/77 (54%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 188
TD+E R +F YG + + + D T R RGF F+ F + +++D V+ H ++ K+V+
Sbjct: 122 TDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVE 181
Query: 189 PKKAKARHGKIFVGGLS 239
K+A + GG S
Sbjct: 182 VKRALPKDANPGGGGRS 198
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 110 bits (264), Expect = 1e-24
Identities = 60/160 (37%), Positives = 96/160 (60%), Gaps = 12/160 (7%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
+TT+ HFG YGEI + D +TG+ RGF FI F P +DKV+ H IN K+
Sbjct: 29 DTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE-DTHVINGKQ 87
Query: 183 VDPKKA--KARHG---------KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 329
V+ K+ K G KIFVGG+ S +++DE+++FF+++G ++E ++ D N
Sbjct: 88 VEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETN 147
Query: 330 QRKGFCFITFESEQVVNDLL-KTPKRTIGGKEVDVKRATP 446
+ +GF F+ F+SE+VV++LL K + +V++K+A P
Sbjct: 148 RSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEP 187
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/81 (34%), Positives = 45/81 (55%)
Frame = +3
Query: 204 ARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND 383
A GKIF+GGL + ++ F ++G I + + D+ Q +GF FITF VV+
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDK 75
Query: 384 LLKTPKRTIGGKEVDVKRATP 446
+++ I GK+V++KR P
Sbjct: 76 VIE-DTHVINGKQVEIKRTIP 95
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 108 bits (259), Expect = 4e-24
Identities = 66/186 (35%), Positives = 102/186 (54%), Gaps = 25/186 (13%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+ +H I+ +
Sbjct: 16 DTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIM-DKHIIDGRT 74
Query: 183 VDPKKAKAR-------------------HG------KIFVGGLSSEISDDEIRNFFSEFG 287
V+ KKA R HG KIFVGGL S I+++E +N+F +FG
Sbjct: 75 VEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFG 134
Query: 288 TILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPTLLATAT 467
TI +V + +D + +GF FITF+S+ V+ +L + GK V+VKRA P ++ +
Sbjct: 135 TIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKEISPVS 194
Query: 468 HDTLPL 485
+ PL
Sbjct: 195 NIRSPL 200
Score = 59.3 bits (137), Expect = 3e-09
Identities = 25/78 (32%), Positives = 49/78 (62%)
Frame = +3
Query: 213 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 392
GK+F+GG+S + ++ +R++FS +G ++E + D+ + +GF FI F ++ V++ +
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF-ADPCVSERVI 64
Query: 393 TPKRTIGGKEVDVKRATP 446
K I G+ V+ K+A P
Sbjct: 65 MDKHIIDGRTVEAKKAVP 82
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 108 bits (259), Expect = 4e-24
Identities = 66/186 (35%), Positives = 102/186 (54%), Gaps = 25/186 (13%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+ +H I+ +
Sbjct: 16 DTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIM-DKHIIDGRT 74
Query: 183 VDPKKAKAR-------------------HG------KIFVGGLSSEISDDEIRNFFSEFG 287
V+ KKA R HG KIFVGGL S I+++E +N+F +FG
Sbjct: 75 VEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFG 134
Query: 288 TILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPTLLATAT 467
TI +V + +D + +GF FITF+S+ V+ +L + GK V+VKRA P ++ +
Sbjct: 135 TIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKEISPVS 194
Query: 468 HDTLPL 485
+ PL
Sbjct: 195 NIRSPL 200
Score = 59.3 bits (137), Expect = 3e-09
Identities = 25/78 (32%), Positives = 49/78 (62%)
Frame = +3
Query: 213 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 392
GK+F+GG+S + ++ +R++FS +G ++E + D+ + +GF FI F ++ V++ +
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF-ADPCVSERVI 64
Query: 393 TPKRTIGGKEVDVKRATP 446
K I G+ V+ K+A P
Sbjct: 65 MDKHIIDGRTVEAKKAVP 82
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 108 bits (259), Expect = 4e-24
Identities = 66/186 (35%), Positives = 102/186 (54%), Gaps = 25/186 (13%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+ +H I+ +
Sbjct: 16 DTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIM-DKHIIDGRT 74
Query: 183 VDPKKAKAR-------------------HG------KIFVGGLSSEISDDEIRNFFSEFG 287
V+ KKA R HG KIFVGGL S I+++E +N+F +FG
Sbjct: 75 VEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFG 134
Query: 288 TILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPTLLATAT 467
TI +V + +D + +GF FITF+S+ V+ +L + GK V+VKRA P ++ +
Sbjct: 135 TIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKEISPVS 194
Query: 468 HDTLPL 485
+ PL
Sbjct: 195 NIRSPL 200
Score = 59.3 bits (137), Expect = 3e-09
Identities = 25/78 (32%), Positives = 49/78 (62%)
Frame = +3
Query: 213 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 392
GK+F+GG+S + ++ +R++FS +G ++E + D+ + +GF FI F ++ V++ +
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF-ADPCVSERVI 64
Query: 393 TPKRTIGGKEVDVKRATP 446
K I G+ V+ K+A P
Sbjct: 65 MDKHIIDGRTVEAKKAVP 82
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 107 bits (258), Expect = 6e-24
Identities = 59/158 (37%), Positives = 87/158 (55%), Gaps = 10/158 (6%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
ETT E HFG YGEI + D TG+ RGF F+ + +DKV+ H I K+
Sbjct: 52 ETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ-DNHIIIGKQ 110
Query: 183 VDPKKAKARHG---------KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQR 335
V+ K+ R KIFVGG+ S + DDE + FF +FG + E ++ D + +
Sbjct: 111 VEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRS 170
Query: 336 KGFCFITFESEQVVNDLLKTPKR-TIGGKEVDVKRATP 446
+GF F+T+ESE +V+ LL R + G +V++K+A P
Sbjct: 171 RGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEP 208
Score = 56.8 bits (131), Expect = 1e-08
Identities = 28/78 (35%), Positives = 45/78 (57%)
Frame = +3
Query: 213 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 392
GKIFVGGL+ E + E F ++G I + + D+ Q +GF F+T+ VV+ +++
Sbjct: 42 GKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ 101
Query: 393 TPKRTIGGKEVDVKRATP 446
I GK+V++KR P
Sbjct: 102 -DNHIIIGKQVEIKRTIP 118
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 105 bits (252), Expect = 3e-23
Identities = 65/188 (34%), Positives = 100/188 (53%), Gaps = 27/188 (14%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE----HTI 170
+T ++ L+++FG YG++ + D TGR+RGF FIVF P ++V+ T+
Sbjct: 25 DTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTV 84
Query: 171 NNKKVDPKKAK-----------------------ARHGKIFVGGLSSEISDDEIRNFFSE 281
KK P+ + AR KIFVGGL S I++ E +N+F +
Sbjct: 85 EAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITEAEFKNYFDQ 144
Query: 282 FGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPTLLAT 461
FGTI +V + +D + +GF FITF+SE+ V+ +L + GK V+VKRA P L++
Sbjct: 145 FGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVPKELSS 204
Query: 462 ATHDTLPL 485
T + PL
Sbjct: 205 TTPNRSPL 212
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/78 (30%), Positives = 46/78 (58%)
Frame = +3
Query: 213 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 392
GK+F+GG+S + ++ ++ +F ++G ++E + D+T + +GF FI F V ++
Sbjct: 15 GKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI- 73
Query: 393 TPKRTIGGKEVDVKRATP 446
K I G+ V+ K+A P
Sbjct: 74 MDKHIIDGRTVEAKKAVP 91
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 105 bits (252), Expect = 3e-23
Identities = 55/140 (39%), Positives = 86/140 (61%), Gaps = 11/140 (7%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
+TT+ HFG YGEI + D +TG+ RGF FI F P +DKV+ H IN K+
Sbjct: 29 DTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE-DTHVINGKQ 87
Query: 183 VDPKKA--KARHG---------KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 329
V+ K+ K G KIFVGG+ S +++DE+++FF+++G ++E ++ D N
Sbjct: 88 VEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETN 147
Query: 330 QRKGFCFITFESEQVVNDLL 389
+ +GF F+ F+SE+VV++LL
Sbjct: 148 RSRGFGFVIFDSEEVVDELL 167
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/81 (34%), Positives = 45/81 (55%)
Frame = +3
Query: 204 ARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND 383
A GKIF+GGL + ++ F ++G I + + D+ Q +GF FITF VV+
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDK 75
Query: 384 LLKTPKRTIGGKEVDVKRATP 446
+++ I GK+V++KR P
Sbjct: 76 VIE-DTHVINGKQVEIKRTIP 95
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/50 (40%), Positives = 31/50 (62%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 158
T+ EL+D F YG + V D T RSRGF F++F + E +D++++ G
Sbjct: 121 TEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 103 bits (246), Expect = 2e-22
Identities = 57/161 (35%), Positives = 92/161 (57%), Gaps = 13/161 (8%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
ETT + ++FG +GE+ + TD TG RGF F+ F +KV+ +H I+++K
Sbjct: 76 ETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE-DHVIDDRK 134
Query: 183 VDPK------------KAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTK 326
VD K KA ++ KIFVGGL + +DE++N+F +G I+E ++ +D
Sbjct: 135 VDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHT 194
Query: 327 NQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATP 446
+ +GF F+TF++E V+ L K +G K+V++KRA P
Sbjct: 195 GRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEP 235
Score = 55.2 bits (127), Expect = 4e-08
Identities = 26/78 (33%), Positives = 44/78 (56%)
Frame = +3
Query: 213 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 392
GK+FVGG+S E + + N+F +FG +++ + D+ +GF F+TF V +L+
Sbjct: 66 GKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE 125
Query: 393 TPKRTIGGKEVDVKRATP 446
I ++VD+KR P
Sbjct: 126 -EDHVIDDRKVDLKRTLP 142
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 102 bits (245), Expect = 2e-22
Identities = 60/176 (34%), Positives = 98/176 (55%), Gaps = 21/176 (11%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
ET++ LRD+F ++GE+ + D TGR+RGF F+VF P ++V+ +H I+ K
Sbjct: 16 ETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL-KHIIDGKI 74
Query: 183 VDPKKAKARHG---------------------KIFVGGLSSEISDDEIRNFFSEFGTILE 299
V+ KKA R KIFVGGL+S +++ E + +F++FG I +
Sbjct: 75 VEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITD 134
Query: 300 VEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPTLLATAT 467
V + +D + +GF FI+++SE+ V+ +L+ + GK V+VK A P +A T
Sbjct: 135 VVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMALNT 190
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/77 (36%), Positives = 45/77 (58%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
K+F+GG+S E S+D +R++F FG +LE + D+ + +GF F+ F V ++
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 396 PKRTIGGKEVDVKRATP 446
K I GK V+ K+A P
Sbjct: 67 -KHIIDGKIVEAKKAVP 82
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 102 bits (245), Expect = 2e-22
Identities = 60/176 (34%), Positives = 98/176 (55%), Gaps = 21/176 (11%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
ET++ LRD+F ++GE+ + D TGR+RGF F+VF P ++V+ +H I+ K
Sbjct: 16 ETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL-KHIIDGKI 74
Query: 183 VDPKKAKARHG---------------------KIFVGGLSSEISDDEIRNFFSEFGTILE 299
V+ KKA R KIFVGGL+S +++ E + +F++FG I +
Sbjct: 75 VEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITD 134
Query: 300 VEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPTLLATAT 467
V + +D + +GF FI+++SE+ V+ +L+ + GK V+VK A P +A T
Sbjct: 135 VVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMALNT 190
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/77 (36%), Positives = 45/77 (58%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
K+F+GG+S E S+D +R++F FG +LE + D+ + +GF F+ F V ++
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 396 PKRTIGGKEVDVKRATP 446
K I GK V+ K+A P
Sbjct: 67 -KHIIDGKIVEAKKAVP 82
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 99.5 bits (237), Expect = 2e-21
Identities = 55/175 (31%), Positives = 95/175 (54%), Gaps = 23/175 (13%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
+T ++ L+++F ++GE+ + D TGR+RGF F+VF P ++ +++ +H I+ +
Sbjct: 16 DTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRL 74
Query: 183 VDPKKAKARHG-----------------------KIFVGGLSSEISDDEIRNFFSEFGTI 293
V+ KKA R KIFVGGL S +++ + + +F +FGT
Sbjct: 75 VEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTT 134
Query: 294 LEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPTLLA 458
+V + +D + +GF FIT++SE+ V +L + GK V+VKRA P L+
Sbjct: 135 TDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELS 189
Score = 64.1 bits (149), Expect = 9e-11
Identities = 26/79 (32%), Positives = 52/79 (65%)
Frame = +3
Query: 210 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 389
+GK+F+GG+S + +++ ++ +FS FG ++E + D+T + +GF F+ F ++ V +++
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF-ADPAVAEIV 63
Query: 390 KTPKRTIGGKEVDVKRATP 446
T K I G+ V+ K+A P
Sbjct: 64 ITEKHNIDGRLVEAKKAVP 82
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 99.5 bits (237), Expect = 2e-21
Identities = 55/175 (31%), Positives = 95/175 (54%), Gaps = 23/175 (13%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
+T ++ L+++F ++GE+ + D TGR+RGF F+VF P ++ +++ +H I+ +
Sbjct: 16 DTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRL 74
Query: 183 VDPKKAKARHG-----------------------KIFVGGLSSEISDDEIRNFFSEFGTI 293
V+ KKA R KIFVGGL S +++ + + +F +FGT
Sbjct: 75 VEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTT 134
Query: 294 LEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPTLLA 458
+V + +D + +GF FIT++SE+ V +L + GK V+VKRA P L+
Sbjct: 135 TDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELS 189
Score = 64.1 bits (149), Expect = 9e-11
Identities = 26/79 (32%), Positives = 52/79 (65%)
Frame = +3
Query: 210 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 389
+GK+F+GG+S + +++ ++ +FS FG ++E + D+T + +GF F+ F ++ V +++
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF-ADPAVAEIV 63
Query: 390 KTPKRTIGGKEVDVKRATP 446
T K I G+ V+ K+A P
Sbjct: 64 ITEKHNIDGRLVEAKKAVP 82
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 97.1 bits (231), Expect = 1e-20
Identities = 57/173 (32%), Positives = 91/173 (52%), Gaps = 25/173 (14%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
+T + LR++F +GE+ + V + TGR RGF F+ F P ID+V+ +H I+N+
Sbjct: 16 DTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ-DKHHIDNRD 74
Query: 183 VDPKKAKARHG-------------------------KIFVGGLSSEISDDEIRNFFSEFG 287
VD K+A +R KIFVGGL ++ DE R +F +G
Sbjct: 75 VDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEFRAYFETYG 134
Query: 288 TILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATP 446
+ + + D+T + +GF F++F+SE V+ +L + GK+V+VKRA P
Sbjct: 135 PVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRALP 187
Score = 62.1 bits (144), Expect = 4e-10
Identities = 28/76 (36%), Positives = 49/76 (64%)
Frame = +3
Query: 213 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 392
GK+F+GG+S + ++ +R +FS FG +L+V + +K + +GF F+ F V++ +L+
Sbjct: 6 GKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ 65
Query: 393 TPKRTIGGKEVDVKRA 440
K I ++VDVKRA
Sbjct: 66 -DKHHIDNRDVDVKRA 80
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 91.5 bits (217), Expect = 5e-19
Identities = 51/151 (33%), Positives = 79/151 (52%), Gaps = 9/151 (5%)
Frame = +3
Query: 21 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 200
L+D+ +G++E V D +TGRSRGF ++ F + E + GEH + N+ ++ K A
Sbjct: 19 LKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK-GEHFLGNRILEVKVA 77
Query: 201 KARHG---------KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 353
+ +IFV + S +S+ + R+ F +G I ++ MP D Q +G FI
Sbjct: 78 TPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFI 137
Query: 354 TFESEQVVNDLLKTPKRTIGGKEVDVKRATP 446
TF S V DL++ +GG V V RATP
Sbjct: 138 TFSSADSVEDLME-DTHDLGGTTVAVDRATP 167
Score = 58.4 bits (135), Expect = 5e-09
Identities = 31/77 (40%), Positives = 45/77 (58%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
KIFVG L E S D++R++F FG I + +P D ++ +GF F+TF +E V D +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTF-AENGVADRVAR 299
Query: 396 PKRTIGGKEVDVKRATP 446
I G+EV + ATP
Sbjct: 300 RSHEICGQEVAIDSATP 316
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/77 (28%), Positives = 46/77 (59%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
K+ V G+ +I D ++++ S+FG + + + D++ + +GF ++TF S + + LK
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK- 62
Query: 396 PKRTIGGKEVDVKRATP 446
+ +G + ++VK ATP
Sbjct: 63 GEHFLGNRILEVKVATP 79
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
E + +LRD+FG +G I+ + DP RGF F+ F D+V A H I ++
Sbjct: 250 EASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRV-ARRSHEICGQE 308
Query: 183 V 185
V
Sbjct: 309 V 309
Score = 41.1 bits (92), Expect = 8e-04
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 149
++ + R HF YGEI + + D N+ + RG FI F + +S++ +M
Sbjct: 103 SESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLM 149
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 67.7 bits (158), Expect(2) = 2e-18
Identities = 31/81 (38%), Positives = 51/81 (62%)
Frame = +3
Query: 204 ARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND 383
+R KIFVGGLSS +++E +++F FG +V + D N+ +GF F+T++SE V
Sbjct: 117 SRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEV 176
Query: 384 LLKTPKRTIGGKEVDVKRATP 446
++++ + K V+VKRA P
Sbjct: 177 VMQSNFHELSDKRVEVKRAIP 197
Score = 54.8 bits (126), Expect = 6e-08
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE-QVVNDLLK 392
K+FVGG++ E S++ ++ +FS +G +LE + +K + +GF F+ F ++ VV L
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 393 TPKRTIGGKEVDVKRA 440
T I GK VDV++A
Sbjct: 67 T--HFILGKPVDVRKA 80
Score = 53.6 bits (123), Expect = 1e-07
Identities = 22/70 (31%), Positives = 42/70 (60%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 185
TT++E + +F +G + V D T R RGF F+ + + +S++ VM + H +++K+V
Sbjct: 131 TTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKRV 190
Query: 186 DPKKAKARHG 215
+ K+A + G
Sbjct: 191 EVKRAIPKEG 200
Score = 42.7 bits (96), Expect(2) = 2e-18
Identities = 23/70 (32%), Positives = 36/70 (51%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
ET+++ L+ +F YG + V + TG+ RGF F+ F + K + H I K
Sbjct: 16 ETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKAL-RDTHFILGKP 74
Query: 183 VDPKKAKARH 212
VD +KA +H
Sbjct: 75 VDVRKAIRKH 84
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 72.1 bits (169), Expect = 4e-13
Identities = 36/112 (32%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Frame = +3
Query: 141 KVMAAGEHTINNKK---VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 311
K + +H + NK + + KIFVGGL+S +++ E + +F++FG I +V +
Sbjct: 6 KAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVM 65
Query: 312 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPTLLATAT 467
+D + +GF FI+++SE+ V+ +L+ + GK V+VK A P +A T
Sbjct: 66 YDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMALNT 117
Score = 51.2 bits (117), Expect = 7e-07
Identities = 24/64 (37%), Positives = 36/64 (56%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 188
T+ E + +F +G I + V D T R RGF FI + + E++DKV+ H +N K V+
Sbjct: 45 TEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVE 104
Query: 189 PKKA 200
K A
Sbjct: 105 VKLA 108
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 52.0 bits (119), Expect(2) = 9e-12
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
+++VG LS + D + + FSE G ++E + +D+ + KGF F+T++S Q V + +K+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 396 -PKRTIGGKEVDVKRA 440
+ G+++ V A
Sbjct: 265 LDGADLDGRQIRVSEA 280
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 365
K+FVG L + ++ F G + VE+ +DK + +GF F+T S
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSS 141
Score = 35.5 bits (78), Expect(2) = 9e-12
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = +3
Query: 18 ELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 197
+L F + G +E + V D TGRSRGF F+ S+ +V AA + N ++D +
Sbjct: 106 QLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTM---SSVSEVEAAAQQ-FNGYELDGRP 161
Query: 198 AKARHG 215
+ G
Sbjct: 162 LRVNAG 167
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT-INNKKVD 188
D L F G++ V D ++GRS+GF F+ + + + + + + + ++ +++
Sbjct: 217 DMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIR 276
Query: 189 PKKAKAR 209
+A+AR
Sbjct: 277 VSEAEAR 283
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 64.5 bits (150), Expect = 7e-11
Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 12/158 (7%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF----------KAP-ESID-KV 146
+TT + LR F +YG++E V D TG+S+G+ F+ F K P + ID +V
Sbjct: 85 DTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRV 144
Query: 147 MAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTK 326
N+ + A KI+V + ++ D + N F +G + E + FDK
Sbjct: 145 TVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVT 204
Query: 327 NQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 440
+ +GF +++ + L P + I GK ++ K A
Sbjct: 205 GKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/68 (30%), Positives = 38/68 (55%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
K+F+ GL+++ + + +R+ FS +G + E + DK + KG+ F+TF LK
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 396 PKRTIGGK 419
P + I G+
Sbjct: 136 PSKKIDGR 143
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 64.5 bits (150), Expect = 7e-11
Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 12/158 (7%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF----------KAP-ESID-KV 146
+TT + LR F +YG++E V D TG+S+G+ F+ F K P + ID +V
Sbjct: 85 DTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRV 144
Query: 147 MAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTK 326
N+ + A KI+V + ++ D + N F +G + E + FDK
Sbjct: 145 TVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVT 204
Query: 327 NQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 440
+ +GF +++ + L P + I GK ++ K A
Sbjct: 205 GKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/68 (30%), Positives = 38/68 (55%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
K+F+ GL+++ + + +R+ FS +G + E + DK + KG+ F+TF LK
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 396 PKRTIGGK 419
P + I G+
Sbjct: 136 PSKKIDGR 143
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 64.1 bits (149), Expect = 9e-11
Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 19/165 (11%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
+T L D F YGEIE D +G+S+G+ FI+FK+ + + I +
Sbjct: 138 DTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRM 197
Query: 183 V------------DPKKAKARH-------GKIFVGGLSSEISDDEIRNFFSEFGTILEVE 305
+P A A+H KI+V +S++I ++ FFS FG I E
Sbjct: 198 TACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGP 257
Query: 306 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 440
+ DK + KGF + S + L+ P +T G + +A
Sbjct: 258 LGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKA 302
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 60.9 bits (141), Expect = 9e-10
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Frame = +3
Query: 204 ARHG-KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 380
A+ G +IFVGGLS E++D ++ FS FG IL+ ++ ++ + +GF FITF + ++
Sbjct: 3 AKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMD 62
Query: 381 DLLKTPK-RTIGGKEVDVKRATPTL 452
+ ++ R G + + V RA P L
Sbjct: 63 ESIREMHGRDFGDRVISVNRAEPKL 87
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA------GEH 164
E TD++L F +G+I + + +TGRSRGF FI F ++D+ + G+
Sbjct: 17 EVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDR 76
Query: 165 TINNKKVDPK 194
I+ + +PK
Sbjct: 77 VISVNRAEPK 86
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/78 (35%), Positives = 42/78 (53%)
Frame = +3
Query: 210 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 389
H K+FVGGL+ E DE+R +F +FG ILE + DK + KG+ F+TF +
Sbjct: 16 HTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAV 75
Query: 390 KTPKRTIGGKEVDVKRAT 443
P I G++ + A+
Sbjct: 76 ADPNPVIDGRKANCNIAS 93
Score = 45.2 bits (102), Expect = 5e-05
Identities = 20/62 (32%), Positives = 35/62 (56%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
ET E+R +F +GEI + TD TG+S+G+ F+ F+ +S + +A I+ +K
Sbjct: 27 ETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGRK 86
Query: 183 VD 188
+
Sbjct: 87 AN 88
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 45.2 bits (102), Expect(2) = 4e-09
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = +3
Query: 132 SIDKVMAAGEHTINNKKV--DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVE 305
S V+ AG H N ++ + IFVGG+ ++ D+++R FS+FG ++ V+
Sbjct: 292 SSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVK 351
Query: 306 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGK 419
+P KG F+ F + D +++ T+ GK
Sbjct: 352 IPVG------KGCGFVQFADRKSAEDAIESLNGTVIGK 383
Score = 39.1 bits (87), Expect = 0.003
Identities = 29/131 (22%), Positives = 58/131 (44%), Gaps = 15/131 (11%)
Frame = +3
Query: 21 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP--- 191
L F GE+ S+ V + T +S G+ F+ F + + ++V+ ++ P
Sbjct: 124 LHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQPFRI 183
Query: 192 --------KKAKARHG---KIFVGGLSSEISDDEIRNFFSE-FGTILEVEMPFDKTKNQR 335
+K +G +FVG LS +++D + FS+ + ++ ++ D +
Sbjct: 184 NWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRS 243
Query: 336 KGFCFITFESE 368
KG+ F+ F E
Sbjct: 244 KGYGFVRFGDE 254
Score = 33.5 bits (73), Expect(2) = 4e-09
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 3 ETTDKELRDHFG-AYGEIESINVKTDPNTGRSRGFAFIVF 119
+ TD L + F Y ++S V D NTGRS+G+ F+ F
Sbjct: 212 DVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRF 251
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 58.0 bits (134), Expect = 6e-09
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 25/171 (14%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
+T + L + F YGEIE D +G+S+G+ FI++K+ + + I ++
Sbjct: 150 DTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRM 209
Query: 183 VDPK------------------KAKARHG-------KIFVGGLSSEISDDEIRNFFSEFG 287
+ A A+H KI+V + +E+ ++ FFS+FG
Sbjct: 210 TACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFG 269
Query: 288 TILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 440
I E + DK + KGFC ++S + L+ P +T G + ++A
Sbjct: 270 EIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/70 (32%), Positives = 38/70 (54%)
Frame = +3
Query: 210 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 389
H KIFV GL + + + F ++G I + + FDK + KG+ FI ++S + L
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 390 KTPKRTIGGK 419
K P++ IG +
Sbjct: 199 KQPQKKIGSR 208
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 58.0 bits (134), Expect = 6e-09
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 25/171 (14%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
+T + L + F YGEIE D +G+S+G+ FI++K+ + + I ++
Sbjct: 150 DTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRM 209
Query: 183 VDPK------------------KAKARHG-------KIFVGGLSSEISDDEIRNFFSEFG 287
+ A A+H KI+V + +E+ ++ FFS+FG
Sbjct: 210 TACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFG 269
Query: 288 TILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 440
I E + DK + KGFC ++S + L+ P +T G + ++A
Sbjct: 270 EIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/70 (32%), Positives = 38/70 (54%)
Frame = +3
Query: 210 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 389
H KIFV GL + + + F ++G I + + FDK + KG+ FI ++S + L
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 390 KTPKRTIGGK 419
K P++ IG +
Sbjct: 199 KQPQKKIGSR 208
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 58.0 bits (134), Expect = 6e-09
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 25/171 (14%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
+T + L + F YGEIE D +G+S+G+ FI++K+ + + I ++
Sbjct: 150 DTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRM 209
Query: 183 VDPK------------------KAKARHG-------KIFVGGLSSEISDDEIRNFFSEFG 287
+ A A+H KI+V + +E+ ++ FFS+FG
Sbjct: 210 TACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFG 269
Query: 288 TILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 440
I E + DK + KGFC ++S + L+ P +T G + ++A
Sbjct: 270 EIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/70 (32%), Positives = 38/70 (54%)
Frame = +3
Query: 210 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 389
H KIFV GL + + + F ++G I + + FDK + KG+ FI ++S + L
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 390 KTPKRTIGGK 419
K P++ IG +
Sbjct: 199 KQPQKKIGSR 208
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 58.0 bits (134), Expect = 6e-09
Identities = 27/76 (35%), Positives = 41/76 (53%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
K+FVGGL+ E DE+R +F +FG ILE + DK + KG+ F+TF +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 396 PKRTIGGKEVDVKRAT 443
P I G++ + A+
Sbjct: 78 PNPVIDGRKANCNIAS 93
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
ET E+R +F +GEI + TD NTG+S+G+ F+ F+ +S + +A I+ +K
Sbjct: 27 ETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRK 86
Query: 183 VD 188
+
Sbjct: 87 AN 88
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 58.0 bits (134), Expect = 6e-09
Identities = 27/76 (35%), Positives = 41/76 (53%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
K+FVGGL+ E DE+R +F +FG ILE + DK + KG+ F+TF +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 396 PKRTIGGKEVDVKRAT 443
P I G++ + A+
Sbjct: 78 PNPVIDGRKANCNIAS 93
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
ET E+R +F +GEI + TD NTG+S+G+ F+ F+ +S + +A I+ +K
Sbjct: 27 ETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRK 86
Query: 183 VD 188
+
Sbjct: 87 AN 88
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 57.6 bits (133), Expect = 8e-09
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Frame = +3
Query: 15 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV-- 185
K L + F A+G I S V DP+ G+S+G+ F+ + E+ + +N+K+V
Sbjct: 147 KALHETFSAFGPILSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
Query: 186 ---------DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 338
DP K + ++V LS +SD+E+ F EFG + D + + K
Sbjct: 206 GPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSK 264
Query: 339 GFCFITFES 365
GF F+ FE+
Sbjct: 265 GFGFVNFEN 273
Score = 56.4 bits (130), Expect = 2e-08
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV 185
TD +L + F G++ S+ V D T RS G+ ++ + P+ + + +N + +
Sbjct: 57 TDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAI 116
Query: 186 -------DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGF 344
DP K+ G IF+ L I + FS FG IL ++ D + Q KG+
Sbjct: 117 RVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPS-GQSKGY 175
Query: 345 CFITFESEQ 371
F+ +++++
Sbjct: 176 GFVQYDTDE 184
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/47 (42%), Positives = 27/47 (57%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 149
TD +LR+HF +G I S V DP +G SRG F+ F PE + +
Sbjct: 339 TDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAI 384
Score = 37.5 bits (83), Expect = 0.009
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 24/145 (16%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAAGEHTINNKKV 185
+D+EL FG +G S + D G+S+GF F+ F+ + ++ V A T ++K+
Sbjct: 236 SDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEW 294
Query: 186 DPKKA-----------------------KARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 296
KA K++ ++V L ++DD++R F+ FGTI
Sbjct: 295 FVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTIT 354
Query: 297 EVEMPFDKTKNQRKGFCFITFESEQ 371
++ D + R G F+ F + +
Sbjct: 355 SCKVMRDPSGVSR-GSGFVAFSTPE 378
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 57.6 bits (133), Expect = 8e-09
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 8/131 (6%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT----- 167
+ T+ L D F + S+ V D N RS G+A+I F P + M A +T
Sbjct: 59 KVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEALNYTPLFDR 117
Query: 168 ---INNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 338
I DP + G IF+ L + I + + FS FGTIL ++ D T + K
Sbjct: 118 PIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVT-GRSK 176
Query: 339 GFCFITFESEQ 371
G+ F+ FE E+
Sbjct: 177 GYGFVQFEKEE 187
Score = 53.2 bits (122), Expect = 2e-07
Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 15/158 (9%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES----IDKV--MAAGE---- 161
+K L + F ++G I S V D TGRS+G+ F+ F+ ES IDK+ M +
Sbjct: 149 NKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVF 207
Query: 162 --HTINNKKV--DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 329
H I ++ D R ++V L EI +DE+R F +FG I + D++ N
Sbjct: 208 VGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGN 267
Query: 330 QRKGFCFITFE-SEQVVNDLLKTPKRTIGGKEVDVKRA 440
R F F+ FE +E + + K ++G + V RA
Sbjct: 268 SR-CFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRA 304
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 131
D++L++ F YG + S V +P G SRGF F+ + PE
Sbjct: 345 DEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPE 383
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 56.8 bits (131), Expect = 1e-08
Identities = 42/155 (27%), Positives = 80/155 (51%), Gaps = 11/155 (7%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK-------APESIDKVMAAGEHT 167
T+ L+D F +G I S V T + G+SRG+ F+ F+ A ++++ + A +
Sbjct: 124 TNAVLQDMFKKFGNIVSCKVATLED-GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEI 182
Query: 168 INNK---KVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 338
K K D K + ++ +++ L +++S+D +R F+EFG I+ + + D+ + R
Sbjct: 183 YVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCR- 241
Query: 339 GFCFITFESEQVVNDLLKTPKRT-IGGKEVDVKRA 440
G+ F+ F++ + +T T G K + V RA
Sbjct: 242 GYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRA 276
Score = 48.0 bits (109), Expect = 7e-06
Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 24/155 (15%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-------------DK 143
+ ++ LR+ F +G+I S+ + D N RG+AF+ F PE K
Sbjct: 211 DVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAETVNGTKFGSK 269
Query: 144 VMAAG--------EHTINNK---KVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGT 290
+ G E + + K + +K A+ I+V ++ ++++E+R FS+ GT
Sbjct: 270 CLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGT 329
Query: 291 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
I ++ D+ K + KGF F+ F + + D +KT
Sbjct: 330 ITSTKLMCDE-KGKSKGFGFVCFSTPEEAIDAVKT 363
Score = 44.0 bits (99), Expect = 1e-04
Identities = 32/150 (21%), Positives = 69/150 (46%), Gaps = 9/150 (6%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV- 185
T+ L D F + + S+ + D ++GRS + + F + + + + +++ N K+
Sbjct: 36 TEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMI 95
Query: 186 -------DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGF 344
P + G +FV L +++ +++ F +FG I+ ++ + +G+
Sbjct: 96 RVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGY 154
Query: 345 CFITFESEQVVNDLLKTPKRTI-GGKEVDV 431
F+ FE E + ++T TI KE+ V
Sbjct: 155 GFVQFEQEDAAHAAIQTLNSTIVADKEIYV 184
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 56.0 bits (129), Expect = 3e-08
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Frame = +3
Query: 129 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEM 308
E +++ GE + +K +A G+++VG L I+ E+ F E GT+++V++
Sbjct: 89 EEVEEEGDEGEEEVEEEK-QTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQI 147
Query: 309 PFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEVDV 431
+DK ++ +GF F+T S E+ + IGG+ V V
Sbjct: 148 VYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
Score = 43.2 bits (97), Expect = 2e-04
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 23/152 (15%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI----VFKAPESID------------ 140
T EL FG G + + + D T RSRGF F+ + +A E++
Sbjct: 128 TSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTV 187
Query: 141 -----KVMAAGEHTINNKKV-DPKKAKA-RHGKIFVGGLSSEISDDEIRNFFSEFGTILE 299
+V GE+ + K+ D ++ K++ G L ++ +++ F + +L
Sbjct: 188 KVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLG 247
Query: 300 VEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
++ +++ + +GF FI+FES + V L T
Sbjct: 248 AKVIYERNTGRSRGFGFISFESAENVQSALAT 279
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 54.8 bits (126), Expect = 6e-08
Identities = 25/91 (27%), Positives = 47/91 (51%)
Frame = +3
Query: 99 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFS 278
G I + I V+ + + ++ P + K++V GLS ++D +R+ F
Sbjct: 39 GTGVISARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFE 98
Query: 279 EFGTILEVEMPFDKTKNQRKGFCFITFESEQ 371
+FG ++ + M DK N+ KGF F+ +E+E+
Sbjct: 99 QFGNLIHMNMVMDKVANRPKGFAFLRYETEE 129
Score = 35.9 bits (79), Expect = 0.029
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH--TINNK 179
TT+ LRD F +G + +N+ D R +GFAF+ ++ E K + G H ++ +
Sbjct: 88 TTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAI-QGMHGKFLDGR 146
Query: 180 KVDPKKAKAR 209
+ ++AK R
Sbjct: 147 VIFVEEAKTR 156
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 53.2 bits (122), Expect = 2e-07
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT-INNKKV- 185
+ L D F + ++ V D T RS G+A++ F PE + M + + I ++ +
Sbjct: 58 ESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIR 116
Query: 186 ------DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFC 347
DP + G +F+ L + I + + FS FGTIL ++ D + KG+
Sbjct: 117 IMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYG 175
Query: 348 FITFESEQ 371
F+ FE E+
Sbjct: 176 FVQFEKEE 183
Score = 50.8 bits (116), Expect = 9e-07
Identities = 43/171 (25%), Positives = 84/171 (49%), Gaps = 25/171 (14%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE----SIDKV--MAAGEH 164
E TD EL+ FG YG+I S V D +G SR F F+ F +PE +++K+ ++ GE
Sbjct: 235 EITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGED 293
Query: 165 TI----NNKKVDPKK--------------AKARHGKIFVGGLSSEISDDEIRNFFSEFGT 290
+ KK D ++ K + +++ L ++D++++ FSE+G
Sbjct: 294 VLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGN 353
Query: 291 ILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEVDVKRA 440
+ ++ + ++ +GF F+ + + E+ + + + + IG K + V A
Sbjct: 354 VTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 403
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 52.8 bits (121), Expect = 2e-07
Identities = 34/133 (25%), Positives = 69/133 (51%), Gaps = 9/133 (6%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--------GEH 164
++ +L F + ++ +N+ D T SRG F++ + E DK++ A G +
Sbjct: 30 SESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNACHNKKTLPGAN 89
Query: 165 TINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGF 344
++ K + + K+FVG L +S+ E+++ FS++GTI ++++ + KG
Sbjct: 90 SLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQI-LRGAQQTSKGC 148
Query: 345 CFITFES-EQVVN 380
F+ +E+ EQ V+
Sbjct: 149 AFLKYETKEQAVS 161
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 52.8 bits (121), Expect = 2e-07
Identities = 34/133 (25%), Positives = 69/133 (51%), Gaps = 9/133 (6%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--------GEH 164
++ +L F + ++ +N+ D T SRG F++ + E DK++ A G +
Sbjct: 30 SESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNACHNKKTLPGAN 89
Query: 165 TINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGF 344
++ K + + K+FVG L +S+ E+++ FS++GTI ++++ + KG
Sbjct: 90 SLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQI-LRGAQQTSKGC 148
Query: 345 CFITFES-EQVVN 380
F+ +E+ EQ V+
Sbjct: 149 AFLKYETKEQAVS 161
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV--MAAGEHTINN 176
E D+EL F ++G + S V D TG S+ F F+ + + + M G H +
Sbjct: 359 EFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMMNGRH-LGG 417
Query: 177 KKV 185
KK+
Sbjct: 418 KKL 420
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/76 (28%), Positives = 45/76 (59%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
KIFVGG+S + +R FS++G +++ ++ D+ + +GF F+TF S + ++ ++
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 396 PKRTIGGKEVDVKRAT 443
+ + G+ + V AT
Sbjct: 95 DGQDLHGRRIRVNYAT 110
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 185
T + LR+ F YGE+ + D TGRSRGFAF+ F + E M ++ +++
Sbjct: 45 TDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRI 104
Query: 186 DPKKAKAR 209
A R
Sbjct: 105 RVNYATER 112
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK- 392
+IFVGGLS ++++ ++ + F +G I E ++ + + +GF FITF + +D +K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 393 TPKRTIGGKEVDVKRATP 446
R +G K + V +A P
Sbjct: 73 MHGRELGNKVISVNKAEP 90
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNK 179
+ T+++L F YG+I + +TGR RGF FI F D + + NK
Sbjct: 22 DVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNK 81
Query: 180 KVDPKKAKARHG 215
+ KA+ + G
Sbjct: 82 VISVNKAEPKVG 93
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK- 392
+IFVGGLS ++++ ++ + F +G I E ++ + + +GF FITF + +D +K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 393 TPKRTIGGKEVDVKRATP 446
R +G K + V +A P
Sbjct: 73 MHGRELGNKVISVNKAEP 90
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNK 179
+ T+++L F YG+I + +TGR RGF FI F D + + NK
Sbjct: 22 DVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNK 81
Query: 180 KVDPKKAKARHG 215
+ KA+ + G
Sbjct: 82 VISVNKAEPKVG 93
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/75 (33%), Positives = 39/75 (52%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
K+FVGGL+ E +RN+F +FG I+E + DK+ + KG+ F+TF +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 396 PKRTIGGKEVDVKRA 440
P I G+ + A
Sbjct: 68 PAPVIDGRRANCNLA 82
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
ET LR++F +G+I V TD ++GRS+G+ F+ F PE+ K I+ ++
Sbjct: 17 ETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGRR 76
Query: 183 VD 188
+
Sbjct: 77 AN 78
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/75 (33%), Positives = 39/75 (52%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
K+FVGGL+ E +RN+F +FG I+E + DK+ + KG+ F+TF +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 396 PKRTIGGKEVDVKRA 440
P I G+ + A
Sbjct: 68 PAPVIDGRRANCNLA 82
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
ET LR++F +G+I V TD ++GRS+G+ F+ F PE+ K I+ ++
Sbjct: 17 ETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGRR 76
Query: 183 VD 188
+
Sbjct: 77 AN 78
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/71 (30%), Positives = 46/71 (64%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
+ FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE- 65
Query: 396 PKRTIGGKEVD 428
+ GKE+D
Sbjct: 66 ---EMNGKELD 73
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 185
T D++L+ F +G++ + D +GRSRGF F+ FK +K M +N K++
Sbjct: 17 TNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRDAIEEMNGKEL 72
Query: 186 D 188
D
Sbjct: 73 D 73
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/71 (30%), Positives = 46/71 (64%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
+ FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE- 65
Query: 396 PKRTIGGKEVD 428
+ GKE+D
Sbjct: 66 ---EMNGKELD 73
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 185
T D++L+ F +G++ + D +GRSRGF F+ FK +K M +N K++
Sbjct: 17 TNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRDAIEEMNGKEL 72
Query: 186 D 188
D
Sbjct: 73 D 73
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/71 (30%), Positives = 46/71 (64%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
+ FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE- 65
Query: 396 PKRTIGGKEVD 428
+ GKE+D
Sbjct: 66 ---EMNGKELD 73
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 185
T D++L+ F +G++ + D +GRSRGF F+ FK +K M +N K++
Sbjct: 17 TNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRDAIEEMNGKEL 72
Query: 186 D 188
D
Sbjct: 73 D 73
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 52.0 bits (119), Expect = 4e-07
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP 191
+++LRD GEI + + D ++G S+G+AF+ FK + K + K
Sbjct: 129 EEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIR 188
Query: 192 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE-VEMPFDKTKNQR-KGFCFITF 359
++F+G + ++DE R + G +E +E+ D T R +GF F+ +
Sbjct: 189 CSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLY 246
Score = 48.4 bits (110), Expect = 5e-06
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +3
Query: 210 HG-KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDL 386
HG ++F+GGL ++ ++++R+ E G I EV + D+ KG+ F+ F+++ V
Sbjct: 114 HGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKA 173
Query: 387 LK 392
++
Sbjct: 174 IE 175
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 52.0 bits (119), Expect = 4e-07
Identities = 25/75 (33%), Positives = 39/75 (52%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
KIFVGGL+ E D +R +F +FG I+E + DK + KG+ F+TF+ + +
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 396 PKRTIGGKEVDVKRA 440
I G+ + A
Sbjct: 83 MNPVIDGRRANCNLA 97
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 134
ET +R +F +GEI V TD NTGRS+G+ F+ FK E+
Sbjct: 32 ETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEA 75
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/76 (31%), Positives = 38/76 (50%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
K+FVGGL+ E + +R F ++G ILE + DK + KG+ F+TF +
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 396 PKRTIGGKEVDVKRAT 443
P I G+ + A+
Sbjct: 85 PTPIIDGRRANCNLAS 100
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/62 (38%), Positives = 35/62 (56%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
ET + LR HF YGEI V D NTGRS+G+ F+ F+ PE+ + A I+ ++
Sbjct: 34 ETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRR 93
Query: 183 VD 188
+
Sbjct: 94 AN 95
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 51.6 bits (118), Expect = 5e-07
Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 9/150 (6%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV- 185
TD +L D+F ++ S+ V D T S G+ ++ + + +K M ++ N K+
Sbjct: 58 TDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMI 117
Query: 186 -------DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGF 344
D ++ G +FV L + + + FS GTI+ ++ D Q +G+
Sbjct: 118 RITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDH-MGQSRGY 176
Query: 345 CFITFESE-QVVNDLLKTPKRTIGGKEVDV 431
F+ F++E N + K + + K++ V
Sbjct: 177 GFVQFDTEDSAKNAIEKLNGKVLNDKQIFV 206
Score = 51.6 bits (118), Expect = 5e-07
Identities = 52/174 (29%), Positives = 77/174 (44%), Gaps = 29/174 (16%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 185
TTD EL+ FG YG I S V D G+SR F F+ F+ PE + + A +N KK
Sbjct: 236 TTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEA----LNGKKF 290
Query: 186 DPKK---AKARH-------------------GKIFVG------GLSSEISDDEIRNFFSE 281
D K+ KA+ G F G L ++D+++R F+E
Sbjct: 291 DDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAE 350
Query: 282 FGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRA 440
FGTI ++ D + KG F+ F + + +L + +GGK + V A
Sbjct: 351 FGTITSCKVMRDPS-GTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALA 403
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/49 (20%), Positives = 27/49 (55%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 365
++VG L ++D ++ ++F+E ++ V + D N G+ ++ + +
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSN 96
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 51.6 bits (118), Expect = 5e-07
Identities = 24/76 (31%), Positives = 38/76 (50%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
K+FVGGL+ E + +R F ++G ILE + DK + KG+ F+TF +
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 396 PKRTIGGKEVDVKRAT 443
P I G+ + A+
Sbjct: 85 PTPIIDGRRANCNLAS 100
Score = 50.8 bits (116), Expect = 9e-07
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 134
ET + LR HF YG+I V TD NTGRS+G+ F+ F+ PE+
Sbjct: 34 ETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 51.2 bits (117), Expect = 7e-07
Identities = 25/75 (33%), Positives = 40/75 (53%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
KI+VGGL + + NFF FG I+ V + D+ ++ +G+ F+TF+ + K
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 396 PKRTIGGKEVDVKRA 440
P TI G+ + K A
Sbjct: 74 PNPTIEGRITNCKLA 88
Score = 41.5 bits (93), Expect = 6e-04
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 6 TTDKE-LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
TT KE L + F +GEI +NV D T RS+G+ F+ FK ES + TI +
Sbjct: 23 TTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDPNPTIEGRI 82
Query: 183 VDPKKA 200
+ K A
Sbjct: 83 TNCKLA 88
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 51.2 bits (117), Expect = 7e-07
Identities = 20/67 (29%), Positives = 43/67 (64%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
+ FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 396 PKRTIGG 416
+ GG
Sbjct: 67 MNGSGGG 73
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 122
T D++L+ F +G++ + D +GRSRGF F+ FK
Sbjct: 17 TNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 51.2 bits (117), Expect = 7e-07
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK- 392
K+FVGGLS D ++ F+ FG + E + D+ + +GF F++F E N+ +K
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 393 TPKRTIGGKEVDVKRAT 443
+ + G+++ V AT
Sbjct: 96 MDGKELNGRQIRVNLAT 112
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 149
T D L+ F ++GE+ V D TGRSRGF F+ F +S + +
Sbjct: 46 TDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 51.2 bits (117), Expect = 7e-07
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK- 392
K+FVGGLS D ++ F+ FG + E + D+ + +GF F++F E N+ +K
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 393 TPKRTIGGKEVDVKRAT 443
+ + G+++ V AT
Sbjct: 96 MDGKELNGRQIRVNLAT 112
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 149
T D L+ F ++GE+ V D TGRSRGF F+ F +S + +
Sbjct: 46 TDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 50.8 bits (116), Expect = 9e-07
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
+ T++++ + F G++ + + D N+ RS+G +I F S+ +A +
Sbjct: 178 KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLFLGQP 237
Query: 183 VDPKKAKARHG-----------------KIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 311
V K ++A K++VG L +S+ ++R F FG + V++P
Sbjct: 238 VMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLP 297
Query: 312 FDKTKNQRKGFCFITF 359
D Q KGF FI F
Sbjct: 298 LDPETGQCKGFGFIQF 313
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/122 (19%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE-SIDKVMAAGEHTINNK 179
+ T+ +L+ G+ GE+ + + + ++G +G+AF+ F++ + + + + K
Sbjct: 102 DATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGK 161
Query: 180 KVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE-VEMPFD-KTKNQRKGFCFI 353
++ +A+H ++F+G + + +I+ + G ++ VE+P + + + +GF FI
Sbjct: 162 RIKCSTTQAKH-RLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQNMGRNRGFAFI 220
Query: 354 TF 359
+
Sbjct: 221 EY 222
Score = 45.2 bits (102), Expect = 5e-05
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Frame = +3
Query: 210 HG-KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDL 386
HG ++++GG+ ++ ++ +++ F G + EV + +K KG+ F+TF S+ + +
Sbjct: 90 HGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEA 149
Query: 387 LKTPKRT-IGGKEV 425
+ T T GK +
Sbjct: 150 IDTLNNTDFRGKRI 163
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/78 (28%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
+ F+GGL+ SD +R+ F ++G ++E ++ DK + +GF FITF+ ++ +++ +
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 396 PK-RTIGGKEVDVKRATP 446
+ G+ + V +A P
Sbjct: 68 MNGMDLDGRTITVDKAQP 85
Score = 48.4 bits (110), Expect = 5e-06
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKK 182
T+D+ LRD F YG + V D +GRSRGF FI F +++D+ +AA ++ +
Sbjct: 18 TSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRT 77
Query: 183 VDPKKAKARHG 215
+ KA+ G
Sbjct: 78 ITVDKAQPHQG 88
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/72 (33%), Positives = 40/72 (55%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
+TT + L+ F +YGEIE +V D +TGR +G+ F++FK + + + E + N+
Sbjct: 418 DTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRMYNRI 477
Query: 183 VDPKKAKARHGK 218
V A + GK
Sbjct: 478 VVCNLASEKPGK 489
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 398
IFV G + + + ++ F +G I E + DK + KG+ F+ F++ + + LK P
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRP 469
Query: 399 KR 404
++
Sbjct: 470 EK 471
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 50.4 bits (115), Expect = 1e-06
Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 12/133 (9%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV- 185
T+ +L F + + +N+ + T RG F+ E DKV+ ++ +NKK
Sbjct: 24 TEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVI----NSFHNKKTL 79
Query: 186 ----DPKKAKARHG-------KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQ 332
P + K G K+FVG L +S+ E+++ FSE+GTI ++++ +
Sbjct: 80 PGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQI-LRGSLQT 138
Query: 333 RKGFCFITFESEQ 371
KG F+ +ES++
Sbjct: 139 SKGCLFLKYESKE 151
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
K+FVG + +++ ++ F EF + EV + +KT +G CF+T + + + ++ +
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 396 --PKRTIGG 416
K+T+ G
Sbjct: 73 FHNKKTLPG 81
Score = 31.5 bits (68), Expect = 0.62
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
E D+EL F +G++ S V D TG S+ F FI + + + + +T+N +
Sbjct: 340 EFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI----NTMNGCQ 395
Query: 183 VDPKKAKAR 209
+ KK K +
Sbjct: 396 LSGKKLKVQ 404
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/132 (21%), Positives = 66/132 (50%), Gaps = 11/132 (8%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA---------GE 161
T++E+R +F +G + + + D TG+ +G F+ + + D+ + A G
Sbjct: 132 TEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGT 191
Query: 162 HTINNKKVDPKKAK--ARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQR 335
+ + D ++ + K+FVG L+ + ++ E+ F +FG + +V + D+ + Q
Sbjct: 192 GPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QS 250
Query: 336 KGFCFITFESEQ 371
+G F+ + S++
Sbjct: 251 RGCGFVKYSSKE 262
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/52 (34%), Positives = 33/52 (63%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 371
K+FVG + +++EIR +F + G +LEV + DK Q++G CF+ + + +
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSK 172
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/132 (21%), Positives = 66/132 (50%), Gaps = 11/132 (8%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA---------GE 161
T++E+R +F +G + + + D TG+ +G F+ + + D+ + A G
Sbjct: 132 TEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGT 191
Query: 162 HTINNKKVDPKKAK--ARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQR 335
+ + D ++ + K+FVG L+ + ++ E+ F +FG + +V + D+ + Q
Sbjct: 192 GPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QS 250
Query: 336 KGFCFITFESEQ 371
+G F+ + S++
Sbjct: 251 RGCGFVKYSSKE 262
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/52 (34%), Positives = 33/52 (63%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 371
K+FVG + +++EIR +F + G +LEV + DK Q++G CF+ + + +
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSK 172
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 50.0 bits (114), Expect = 2e-06
Identities = 30/77 (38%), Positives = 40/77 (51%)
Frame = +3
Query: 198 AKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 377
AK ++FV LS+ +D +R FS FG I E + D + KGF FITF+SE
Sbjct: 2 AKRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDA 61
Query: 378 NDLLKTPKRTIGGKEVD 428
LK ++ GK VD
Sbjct: 62 RKALK----SLDGKIVD 74
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 149
TTD+ LR F +G+I+ + D T R +GF FI F + + K +
Sbjct: 18 TTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 50.0 bits (114), Expect = 2e-06
Identities = 19/51 (37%), Positives = 32/51 (62%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 368
K+F+GGLS + + +++ FS FG + EV + +DK + +GF F+ F E
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEE 92
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 119
++ L+D F ++GE+ + + D +GRSRGF F+ F
Sbjct: 54 EQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 49.6 bits (113), Expect = 2e-06
Identities = 20/76 (26%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
K+F+GG++ + +D +R F+++G +++ + D+ + +GF F+TF S + + ++
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 396 -PKRTIGGKEVDVKRA 440
R + G+ V V A
Sbjct: 101 LDGRDLHGRVVKVNYA 116
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 155
+ LR+ F YGE+ V D TGRSRGF F+ F + E+ + A
Sbjct: 53 EDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 49.2 bits (112), Expect = 3e-06
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = +3
Query: 117 FKAPESIDKVMAAGE--HTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGT 290
+ + +D V +A +I + V+ H KIFV GL E + + + F +G
Sbjct: 70 YSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGE 129
Query: 291 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTI 410
I E + DK + KGF F+ F++ + + LK PK+ I
Sbjct: 130 IEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRI 169
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/59 (35%), Positives = 32/59 (54%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK 179
ETT + L F YGEIE V D TG+++GF F++FK + + + + I N+
Sbjct: 114 ETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 49.2 bits (112), Expect = 3e-06
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = +3
Query: 117 FKAPESIDKVMAAGE--HTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGT 290
+ + +D V +A +I + V+ H KIFV GL E + + + F +G
Sbjct: 70 YSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGE 129
Query: 291 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTI 410
I E + DK + KGF F+ F++ + + LK PK+ I
Sbjct: 130 IEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRI 169
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/59 (35%), Positives = 32/59 (54%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK 179
ETT + L F YGEIE V D TG+++GF F++FK + + + + I N+
Sbjct: 114 ETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 49.2 bits (112), Expect = 3e-06
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 25/141 (17%)
Frame = +3
Query: 18 ELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK-------APESIDKVMAAGEH---- 164
+L D F +G + S+ V +P TG SRG ++ A S+D G
Sbjct: 123 QLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVR 182
Query: 165 --------TINNKKV---DPKKA---KARHGKIFVGGLSSEISDDEIRNFFSEFGTILEV 302
T N +V PKK +++H K++VG L D +RN FS+FGTI+
Sbjct: 183 YSVDMNPGTRRNPEVLNSTPKKILMYESQH-KVYVGNLPWFTQPDGLRNHFSKFGTIVST 241
Query: 303 EMPFDKTKNQRKGFCFITFES 365
+ D+ + + F F++F S
Sbjct: 242 RVLHDRKTGRNRVFAFLSFTS 262
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +3
Query: 21 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 152
LR+HF +G I S V D TGR+R FAF+ F + E D ++
Sbjct: 228 LRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS 271
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 48.8 bits (111), Expect = 4e-06
Identities = 25/84 (29%), Positives = 44/84 (52%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
+ FVGGL+ + I F+EFG + + ++ D+ + KGF F+TF+ E D ++T
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDE----DSMRT 100
Query: 396 PKRTIGGKEVDVKRATPTLLATAT 467
+ G+E+D + T + T
Sbjct: 101 AIDRMNGQELDGRNITAQARGSGT 124
Score = 36.7 bits (81), Expect = 0.016
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 137
T ++ + F +GE+ + D TGRS+GF F+ FK +S+
Sbjct: 55 TDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSM 98
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/76 (30%), Positives = 37/76 (48%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
K+FVGGL+ E + ++ F +FG ILE + DK + KG+ F+TF +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 396 PKRTIGGKEVDVKRAT 443
I G+ + A+
Sbjct: 74 ATPVIDGRRANCNLAS 89
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
ET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+ I+ ++
Sbjct: 23 ETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
Query: 183 VD 188
+
Sbjct: 83 AN 84
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/76 (30%), Positives = 37/76 (48%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
K+FVGGL+ E + ++ F +FG ILE + DK + KG+ F+TF +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 396 PKRTIGGKEVDVKRAT 443
I G+ + A+
Sbjct: 74 ATPVIDGRRANCNLAS 89
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
ET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+ I+ ++
Sbjct: 23 ETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
Query: 183 VD 188
+
Sbjct: 83 AN 84
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/76 (30%), Positives = 37/76 (48%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
K+FVGGL+ E + ++ F +FG ILE + DK + KG+ F+TF +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 396 PKRTIGGKEVDVKRAT 443
I G+ + A+
Sbjct: 74 ATPVIDGRRANCNLAS 89
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
ET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+ I+ ++
Sbjct: 23 ETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
Query: 183 VD 188
+
Sbjct: 83 AN 84
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI-NNKKV 185
T+++L DHF G++ +++ DP T SRGF FI K+ ++ + + +H++ + +
Sbjct: 87 TERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVI 146
Query: 186 DPKKAKARHGK 218
+KA+ R G+
Sbjct: 147 TVEKARRRRGR 157
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/75 (22%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 398
++V GLS +++ ++ + F++ G + +V + D + +GF FI+ +S N +++
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 136
Query: 399 KRTI-GGKEVDVKRA 440
++ G+ + V++A
Sbjct: 137 DHSVLQGRVITVEKA 151
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 48.4 bits (110), Expect = 5e-06
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 11/134 (8%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT-INNK 179
+ T+K+L D F + S+++ + TG+S +A+I F +P S M H+ + K
Sbjct: 31 DVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRLNHSDLKGK 90
Query: 180 KVD----------PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 329
+ ++ + ++V L S I+ + F FG+IL ++ +
Sbjct: 91 AMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVV--EENG 148
Query: 330 QRKGFCFITFESEQ 371
Q KGF F+ F++EQ
Sbjct: 149 QSKGFGFVQFDTEQ 162
Score = 40.7 bits (91), Expect = 0.001
Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 23/165 (13%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTINNK- 179
TD L F YG + S+ V D GRSRGF F+ F PE+ K M + G + K
Sbjct: 214 TDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKL 272
Query: 180 ------KVDPK--------------KAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 299
K D + K R ++V LS +++ +R F +G I+
Sbjct: 273 FVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVS 332
Query: 300 VEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVK 434
++ + + KGF F+ F + + K KR + G VD K
Sbjct: 333 AKVMCHE-NGRSKGFGFVCFSN----CEESKQAKRYLNGFLVDGK 372
Score = 37.5 bits (83), Expect = 0.009
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 12/129 (9%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-------GEHT 167
T L F +G I S V + G+S+GF F+ F +S +A G+
Sbjct: 124 TSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKL 181
Query: 168 INNKKVDPKKAKARHGK-----IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQ 332
K ++ + A G ++V L ++DD + FS++GT+ V + D
Sbjct: 182 FVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRS 241
Query: 333 RKGFCFITF 359
R GF F+ F
Sbjct: 242 R-GFGFVNF 249
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 48.0 bits (109), Expect = 7e-06
Identities = 24/88 (27%), Positives = 44/88 (50%)
Frame = +3
Query: 129 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEM 308
ES++K + + D + + K+F+ GLS S+ +R F FG ++EV++
Sbjct: 254 ESLNKDYEGDSTQDSRDQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKI 313
Query: 309 PFDKTKNQRKGFCFITFESEQVVNDLLK 392
DK + KG+ F+ + +E+ LK
Sbjct: 314 IMDKISKRSKGYAFLEYTTEEAAGTALK 341
Score = 34.3 bits (75), Expect = 0.088
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 134
T++K LR F +GE+ + + D + RS+G+AF+ + E+
Sbjct: 293 TSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEA 335
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 47.6 bits (108), Expect = 9e-06
Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 14/130 (10%)
Frame = +3
Query: 33 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVDPKKAKAR 209
F G +E V + +T +SRGF F+ E +K + +N +++ +A R
Sbjct: 133 FEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPR 192
Query: 210 HGK-------------IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF 350
+ I+VG L ++ + FSE G +++ + D+ + +GF F
Sbjct: 193 GSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGF 252
Query: 351 ITFESEQVVN 380
+ +E VN
Sbjct: 253 VQMSNENEVN 262
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLK 392
K+FVG L ++ + F + GT+ E+ +++ +Q +GF F+T + E+ + K
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 393 TPKRTIGGKEVDVKRATP 446
+ G+ + V RA P
Sbjct: 174 FNSFEVNGRRLTVNRAAP 191
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 33 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 155
F +G++ V +D TGRSRGF F+ ++ +AA
Sbjct: 227 FSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 47.6 bits (108), Expect = 9e-06
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
+++VG LS + D + N F+E G ++E + +D+ + KGF F+T S Q V + +
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Query: 396 PK-RTIGGKEVDVKRA 440
+ G+++ V A
Sbjct: 310 LNGADLDGRQIRVSEA 325
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 365
K+FVG LS + ++ F G + VE+ +DK + +GF F+T +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
Score = 34.3 bits (75), Expect = 0.088
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVD 188
D L + F G++ V D ++GRS+GF F+ + + + K + + ++ +++
Sbjct: 262 DMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIR 321
Query: 189 PKKAKAR 209
+A+AR
Sbjct: 322 VSEAEAR 328
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 18 ELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 140
+L F + G +E + V D TGRSRGF F+ ++
Sbjct: 114 QLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 47.6 bits (108), Expect = 9e-06
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
+++VG LS + D + N F+E G ++E + +D+ + KGF F+T S Q V + +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 396 PK-RTIGGKEVDVKRA 440
+ G+++ V A
Sbjct: 318 LNGADLDGRQIRVSEA 333
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 365
K+FVG LS + ++ F G + VE+ +DK + +GF F+T +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
Score = 34.3 bits (75), Expect = 0.088
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVD 188
D L + F G++ V D ++GRS+GF F+ + + + K + + ++ +++
Sbjct: 270 DMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIR 329
Query: 189 PKKAKAR 209
+A+AR
Sbjct: 330 VSEAEAR 336
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 18 ELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 140
+L F + G +E + V D TGRSRGF F+ ++
Sbjct: 114 QLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 47.6 bits (108), Expect = 9e-06
Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKT 395
+FV G+S +++ + FS++G +L+V++ DK + + KGF ++TF S E+ LL+
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 396 PKRTIGGKEV 425
+ + G+ V
Sbjct: 83 NAQLVDGRVV 92
Score = 35.5 bits (78), Expect = 0.038
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 149
+T++ L F YG++ ++V D R +GFA++ F + E +K +
Sbjct: 32 STEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 47.6 bits (108), Expect = 9e-06
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
KIFVGGLS + ++ F FG I++ + D+ +GF F+T++S +V N+ ++
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 396 -PKRTIGGKEVDVKRA 440
+ + G+ + V A
Sbjct: 97 MQNKELDGRIIGVHPA 112
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +3
Query: 6 TTDKEL-RDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
+TD EL ++ FG++G+I V D +G SRGF F+ + + E + M A + NK+
Sbjct: 46 STDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA----MQNKE 101
Query: 183 VD 188
+D
Sbjct: 102 LD 103
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 47.2 bits (107), Expect = 1e-05
Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Frame = +3
Query: 33 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVDPKKAKAR 209
F G +E V + T +SRGF F+ + + + + + +N + + KA R
Sbjct: 170 FEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPR 229
Query: 210 HGK-------------IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF 350
+ ++VG L ++ + + FSE G ++E + +D+ + +GF F
Sbjct: 230 GSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGF 289
Query: 351 ITFESEQVVNDLL 389
+T +N+ +
Sbjct: 290 VTMSDVDELNEAI 302
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/82 (24%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +3
Query: 204 ARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVN 380
+ K+FVG L+ +++ + F + GT+ E+ +++ +Q +GF F+T S ++
Sbjct: 147 SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAET 206
Query: 381 DLLKTPKRTIGGKEVDVKRATP 446
+ K + + G+ + V +A P
Sbjct: 207 AVEKFNRYDLNGRLLTVNKAAP 228
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 21 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 155
L F +G++ V D TGRSRGF F+ + +++ ++A
Sbjct: 260 LEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 3/131 (2%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 188
++++L+ FG GE+ + + +P T +S+G AF+ F E + + + + N K
Sbjct: 226 SEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKC 285
Query: 189 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG--TILEVEMPFDKTK-NQRKGFCFITF 359
A + +FVG + + + +R +G + ++ + D N +G+ F+ F
Sbjct: 286 GVTASQDNDTLFVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEF 345
Query: 360 ESEQVVNDLLK 392
S D K
Sbjct: 346 SSRSDAMDAHK 356
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP 191
++ +RD YG++E + + + + R + F F+ F E+ V A INN ++
Sbjct: 404 EERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEA--AVSCA--KFINNSELGE 459
Query: 192 KKAKAR 209
+ KA+
Sbjct: 460 GEDKAK 465
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 46.8 bits (106), Expect = 2e-05
Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 24/167 (14%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAAGEHTINNK- 179
TTD +L++ FG YG+I S V D G+S+GF F+ F+ A ++ V + H ++K
Sbjct: 40 TTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESLNGHKFDDKE 98
Query: 180 --------------------KVDPKKA--KARHGKIFVGGLSSEISDDEIRNFFSEFGTI 293
+ + K+A K + ++V L ISD++++ FS FGT+
Sbjct: 99 WYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTV 158
Query: 294 LEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVK 434
++ D KG F+ F + + + + + GK ++ K
Sbjct: 159 TSSKVMRD-PNGTSKGSGFVAFATPEEATEAMS----QLSGKMIESK 200
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/76 (27%), Positives = 39/76 (51%)
Frame = +3
Query: 138 DKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 317
DK + G + ++ D K + ++V L+ +DD+++N F E+G I + D
Sbjct: 5 DKQVYVGPF-LRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD 63
Query: 318 KTKNQRKGFCFITFES 365
+ + KGF F+ FE+
Sbjct: 64 -GEGKSKGFGFVNFEN 78
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/78 (26%), Positives = 41/78 (52%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
K++VGG+ + ++DEIR++F G I++V+ G FITF++E L
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAF 221
Query: 396 PKRTIGGKEVDVKRATPT 449
+ +G + + +++ T
Sbjct: 222 DRAAMGDRYLTIQQYVKT 239
Score = 44.4 bits (100), Expect = 8e-05
Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 21/164 (12%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA-----AGEH- 164
++T+ E+R +F + G I ++ K P G G AFI F + + +A G+
Sbjct: 171 QSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAFDRAAMGDRY 230
Query: 165 -TINN--KKVDPKKAKAR------------HGKIFVGGLSSEISDDEIRNFFSEFGTILE 299
TI K P + + + ++++G L+ + ++ +IR FS+ I
Sbjct: 231 LTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKLFSDC-VINS 289
Query: 300 VEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDV 431
V + +K + KG+ + F+ V LK ++ I G+ V +
Sbjct: 290 VRLGKNKETGEFKGYAHVDFKDSVSVAIALKLDQQVICGRPVKI 333
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 46.8 bits (106), Expect = 2e-05
Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 24/169 (14%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 188
T++++ + F G++ + + D + RSRG ++ F S+ +A + + V
Sbjct: 194 TERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIALSGQPLLGQPVM 253
Query: 189 PKKAKARHG-----------------------KIFVGGLSSEISDDEIRNFFSEFGTILE 299
K ++A +++VG L +S+D++R F FG++
Sbjct: 254 VKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVEL 313
Query: 300 VEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPKRTIGGKEVDVKRAT 443
V++P D+T KGF F+ F E N L + I G+ + V T
Sbjct: 314 VQVPRDET-GLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIKVSAVT 361
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/78 (30%), Positives = 38/78 (48%)
Frame = +3
Query: 207 RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDL 386
R KI+V GL + + ++F FG I+ ++ D + KGF F+TF +
Sbjct: 7 RETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRA 66
Query: 387 LKTPKRTIGGKEVDVKRA 440
+ P TI G+ V+ K A
Sbjct: 67 CENPNHTIDGRTVNCKLA 84
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/65 (35%), Positives = 33/65 (50%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 185
T + L +F +GEI V D T RS+GF F+ F+ ES + HTI+ + V
Sbjct: 20 TRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTV 79
Query: 186 DPKKA 200
+ K A
Sbjct: 80 NCKLA 84
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 46.4 bits (105), Expect = 2e-05
Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 26/170 (15%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-------------DKVM 149
TD +L+ FG +GEI S V D G+SR F F+ F+ E+ +K +
Sbjct: 131 TDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKEL 189
Query: 150 AAGEHTINNKKVDPKKAK-----------ARHG-KIFVGGLSSEISDDEIRNFFSEFGTI 293
G + + KAK R G ++V L + + ++ FSEFGTI
Sbjct: 190 HVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTI 249
Query: 294 LEVEMPFDKTKNQRKGFCFITFE-SEQVVNDLLKTPKRTIGGKEVDVKRA 440
++ + KG F+ F SE+ +LK + +G K + V A
Sbjct: 250 TSCKV-MVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLA 298
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +3
Query: 186 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 365
DP + G +FV L I + ++ + FS FG +L ++ D KG+ F+ F S
Sbjct: 22 DPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARD-ASGVSKGYGFVQFYS 80
Query: 366 E 368
+
Sbjct: 81 D 81
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 46.0 bits (104), Expect = 3e-05
Identities = 37/166 (22%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKV 185
T+++L +G +E + V D +GRSR F F K+ E + V+ +T+ +++
Sbjct: 88 TNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREI 147
Query: 186 -------------DPKKAKARHG-------KIFVGGLSSEISDDEIRNFFSEFGTILEVE 305
D ++ K++VG L+ ++ + + N FSE G ++ +
Sbjct: 148 KVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAK 207
Query: 306 MPFDKTKNQRKGFCFITFESEQVVN-DLLKTPKRTIGGKEVDVKRA 440
+ ++ GF F+TF SE+ V ++ + G+++ V +A
Sbjct: 208 VSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/84 (23%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +3
Query: 183 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE 362
+DP AR ++++G + ++++++ E G + +V++ +DK + + F F T +
Sbjct: 68 LDPSSEAAR--RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMK 125
Query: 363 SEQVVNDLL-KTPKRTIGGKEVDV 431
S + N ++ K T+ G+E+ V
Sbjct: 126 SVEDANAVVEKLNGNTVEGREIKV 149
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +3
Query: 3 ETTDKELRDH-FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID-KVMAAGEHTINN 176
+T KE+ ++ F G++ S V P T +S GF F+ F + E ++ ++A +
Sbjct: 186 KTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEG 245
Query: 177 KKVDPKKA 200
+K+ KA
Sbjct: 246 QKIRVNKA 253
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 46.0 bits (104), Expect = 3e-05
Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 20/163 (12%)
Frame = +3
Query: 18 ELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI--------- 170
++ + F GE+ + + + + G +G+ I F +PE K + +
Sbjct: 399 DIENFFKEAGEVVDVRLSSFDD-GSFKGYGHIEFASPEEAQKALEMNGKLLLGRDVRLDL 457
Query: 171 NNKKVDPKKAK-ARHGK------IFVGGLSSEISDDEI----RNFFSEFGTILEVEMPFD 317
N++ P+ + R G+ I+V G SS + +DEI R+ FS+ G + V +P D
Sbjct: 458 ANERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTD 517
Query: 318 KTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATP 446
+ +GF +I S ++ L+ IGG + V+ + P
Sbjct: 518 RETGASRGFAYIDLTSG--FDEALQLSGSEIGGGNIHVEESRP 558
Score = 44.4 bits (100), Expect = 8e-05
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = +3
Query: 15 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFI 113
KELR HF GE+ ++V TD TG SRGFA+I
Sbjct: 497 KELRSHFSKCGEVTRVHVPTDRETGASRGFAYI 529
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Frame = +3
Query: 120 KAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 299
K ++ V A + K + + +F G LS +I+ +I NFF E G +++
Sbjct: 353 KKDSDVEMVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVD 412
Query: 300 VEM-PFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEV 425
V + FD KG+ I F S + L+ + + G++V
Sbjct: 413 VRLSSFD--DGSFKGYGHIEFASPEEAQKALEMNGKLLLGRDV 453
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLK 392
K+F+GGLS ++ + FS+ G ++E ++ D+ ++ KGF F+TF S ++ L++
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 393 TPKRTIGGKEVDVKRA 440
+ + G+ + V A
Sbjct: 95 FNGQQLNGRTIFVDYA 110
Score = 35.1 bits (77), Expect = 0.050
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKK 182
TT++ L + F G++ + D + RS+GF F+ F + + K +M +N +
Sbjct: 45 TTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRT 104
Query: 183 VDPKKAKAR 209
+ AKA+
Sbjct: 105 IFVDYAKAK 113
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 45.6 bits (103), Expect = 4e-05
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 149
T++EL +HF +G+I +++ D T RSRG A+I++ PE + M
Sbjct: 273 TEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAM 319
Score = 32.3 bits (70), Expect = 0.35
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 119
E T +ELR F +G+I+S+ + N G+ G+AF+ F
Sbjct: 679 EATKRELRQLFSPFGQIKSMRL-PKKNIGQYAGYAFVEF 716
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/61 (34%), Positives = 34/61 (55%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
+TT + L+ F YGEI +V D +TGR++GF F++FK + + E + N+
Sbjct: 173 DTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRT 232
Query: 183 V 185
V
Sbjct: 233 V 233
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/76 (28%), Positives = 38/76 (50%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 398
IFV GL + + + ++ F +G I E + DK + KGF F+ F++ + LK P
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNP 224
Query: 399 KRTIGGKEVDVKRATP 446
++ + + V A P
Sbjct: 225 EKRMYNRTVSCLPARP 240
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 45.2 bits (102), Expect = 5e-05
Identities = 22/76 (28%), Positives = 39/76 (51%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
KIFVG L+ + D++R +F +FG +++ + + + KG+ FITF L+
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72
Query: 396 PKRTIGGKEVDVKRAT 443
K I G+ + A+
Sbjct: 73 SKPIIDGRTTNCNLAS 88
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 45.2 bits (102), Expect = 5e-05
Identities = 18/49 (36%), Positives = 32/49 (65%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 152
TT+++L+D F ++G++ V TD ++GRS+GF F+ + E +K A
Sbjct: 45 TTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKA 93
Score = 39.1 bits (87), Expect = 0.003
Identities = 14/48 (29%), Positives = 32/48 (66%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 359
++FV GLS +++++++ F+ FG +++ + D+ + KGF F+T+
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTY 82
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 45.2 bits (102), Expect = 5e-05
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 15/122 (12%)
Frame = +3
Query: 48 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP-----------K 194
EI S+ V + N G S G+ F+ F++ + DKV+ T P +
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGE 187
Query: 195 KAKARHG---KIFVGGLSSEISDDEIRNFFSE-FGTILEVEMPFDKTKNQRKGFCFITFE 362
K +G IFVG LS ++SD+ + FSE + ++ ++ D + KG+ F+ F
Sbjct: 188 KRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFG 247
Query: 363 SE 368
E
Sbjct: 248 DE 249
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 3 ETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 149
+ +D L + F Y +++ V D NTGRS+G+ F+ F K M
Sbjct: 207 DVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 45.2 bits (102), Expect = 5e-05
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 15/122 (12%)
Frame = +3
Query: 48 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP-----------K 194
EI S+ V + N G S G+ F+ F++ + DKV+ T P +
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGE 187
Query: 195 KAKARHG---KIFVGGLSSEISDDEIRNFFSE-FGTILEVEMPFDKTKNQRKGFCFITFE 362
K +G IFVG LS ++SD+ + FSE + ++ ++ D + KG+ F+ F
Sbjct: 188 KRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFG 247
Query: 363 SE 368
E
Sbjct: 248 DE 249
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/68 (33%), Positives = 39/68 (57%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 398
IFVGGL S ++D++++ F+EFG I+ V++P KG F+ F + + L+
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEKL 359
Query: 399 KRTIGGKE 422
T+ GK+
Sbjct: 360 NGTVIGKQ 367
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/76 (25%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
+ FVGGL+ D + F+++G +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 396 PK-RTIGGKEVDVKRA 440
+ + G+ + V A
Sbjct: 69 MNGQDLDGRSITVNEA 84
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKK 182
T D+ L F YG++ + D TGRSRGF F+ FK +++ D + ++ +
Sbjct: 19 TDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRS 78
Query: 183 VDPKKAKAR 209
+ +A++R
Sbjct: 79 ITVNEAQSR 87
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/76 (25%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
+ FVGGL+ D + F+++G +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 396 PK-RTIGGKEVDVKRA 440
+ + G+ + V A
Sbjct: 69 MNGQDLDGRSITVNEA 84
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKK 182
T D+ L F YG++ + D TGRSRGF F+ FK +++ D + ++ +
Sbjct: 19 TDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRS 78
Query: 183 VDPKKAKAR 209
+ +A++R
Sbjct: 79 ITVNEAQSR 87
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = +3
Query: 177 KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT 356
+K +K+ + V GL I++ ++ FSE G + + +K ++ +GF F+
Sbjct: 8 RKDGEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVK 67
Query: 357 FESEQVVNDLLKTPK-RTIGGKEVDVKRA 440
F ++ VN ++ T+GG+ + VK+A
Sbjct: 68 FALQEDVNRAIELKNGSTVGGRRITVKQA 96
Score = 35.9 bits (79), Expect = 0.029
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAA 155
+ T +E++ F +GE+ES+++ T R G AF+ FK A S+ + AA
Sbjct: 571 DVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAA 622
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKV 185
T+ +L + F G + + T+ + RGFAF+ F E +++ + T+ +++
Sbjct: 32 TNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNGSTVGGRRI 91
Query: 186 DPKKAKAR 209
K+A R
Sbjct: 92 TVKQAAHR 99
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 44.8 bits (101), Expect = 6e-05
Identities = 24/68 (35%), Positives = 39/68 (57%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 398
IFVGGL S ++D++++ FSEFG I+ V++P KG F+ F + + L+
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEKL 361
Query: 399 KRTIGGKE 422
T+ GK+
Sbjct: 362 NGTVIGKQ 369
Score = 38.3 bits (85), Expect = 0.005
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 15/122 (12%)
Frame = +3
Query: 48 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-----AAGEHTINNKKVD------PK 194
EI S+ V + + G S G+ F+ F++ + DKV+ A +T +++ +
Sbjct: 130 EIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGE 189
Query: 195 KAKARHG---KIFVGGLSSEISDDEIRNFFSE-FGTILEVEMPFDKTKNQRKGFCFITFE 362
K +G IFVG L+ ++SD + FSE + ++ ++ D + KG+ F+ F
Sbjct: 190 KRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFG 249
Query: 363 SE 368
E
Sbjct: 250 DE 251
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 44.4 bits (100), Expect = 8e-05
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL-K 392
K+F+GGLS D +R+ F+ FG +++ ++ D+ + +GF F+ F E + +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 393 TPKRTIGGKEVDVKRA 440
+ + G+ + V A
Sbjct: 96 MDGKELNGRHIRVNPA 111
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 119
T D LRD F +G++ V D TGRSRGF F+ F
Sbjct: 46 TDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 44.4 bits (100), Expect = 8e-05
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL-K 392
K+F+GGLS D +R+ F+ FG +++ ++ D+ + +GF F+ F E + +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 393 TPKRTIGGKEVDVKRA 440
+ + G+ + V A
Sbjct: 96 MDGKELNGRHIRVNPA 111
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 119
T D LRD F +G++ V D TGRSRGF F+ F
Sbjct: 46 TDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 44.4 bits (100), Expect = 8e-05
Identities = 16/56 (28%), Positives = 35/56 (62%)
Frame = +3
Query: 222 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 389
FV GL + + ++ + FS+FG +++ ++ +D+ + + F F+TFE E+ + D +
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAI 65
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVM 149
+T +K+L D F +G + + D +TG+SR F F+ F+ +S+ D +M
Sbjct: 17 DTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIM 66
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 44.4 bits (100), Expect = 8e-05
Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESIN-VKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK 179
+ T+ L++ F + G IES ++ D + S GF + S+ + G H
Sbjct: 73 QVTEILLQEIFASTGPIESCKLIRKDKS---SYGFVHYFDRRCASMAIMTLNGRHIFGQP 129
Query: 180 -KVD------PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 338
KV+ ++ + H IFVG LS E++D + + FS F + + + +D+ + +
Sbjct: 130 MKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSR 189
Query: 339 GFCFITFESEQ 371
GF F++F ++Q
Sbjct: 190 GFGFVSFRNQQ 200
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/59 (30%), Positives = 35/59 (59%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 185
T+++L DHF G++ +++ DP T SRGF FI K+ ++ + + +H++ +V
Sbjct: 57 TERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRV 115
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/74 (21%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 398
++V GLS +++ ++ + F++ G + +V + D + +GF FI+ +S N +++
Sbjct: 47 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 106
Query: 399 KRTI-GGKEVDVKR 437
++ G+ + V++
Sbjct: 107 DHSVLQGRVITVEK 120
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK- 392
+++VG LS +DD +R FS +G +++ + D+ ++ +GF F+T+ S +
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 393 TPKRTIGGKEVDVK 434
+ + G+ V VK
Sbjct: 64 MDGKELNGRRVSVK 77
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKK 182
TTD LR+ F YG + V D T RSRGF F+ + + + ++ + +N ++
Sbjct: 14 TTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRR 73
Query: 183 VDPK 194
V K
Sbjct: 74 VSVK 77
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/76 (27%), Positives = 39/76 (51%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
K+FVGGL+ + + + + F ++G ILE + DK + KG+ F+TF+ + +
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 396 PKRTIGGKEVDVKRAT 443
I G+ + A+
Sbjct: 78 STPIINGRRANCNLAS 93
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
+T + + DHF YG+I + +D T RS+G+ F+ FK ++ + IN ++
Sbjct: 27 DTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRR 86
Query: 183 VD 188
+
Sbjct: 87 AN 88
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 43.6 bits (98), Expect = 1e-04
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 12/126 (9%)
Frame = +3
Query: 54 ESINVKTDPNTGRSRGFAFIVFKAPE-------SIDKVMAAGEHTINNKKVDPKKAK--- 203
E + V + +TG+SRGFAF+ E ++D G N PK K
Sbjct: 112 ELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPL 171
Query: 204 --ARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 377
K+FVG LS ++ + + F E G ++ + FD + +G+ F+ + S+ +
Sbjct: 172 YPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEM 231
Query: 378 NDLLKT 395
L++
Sbjct: 232 ETALES 237
Score = 31.5 bits (68), Expect = 0.62
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 149
T + L F G++ V D +TGRSRG+ F+ + + ++ +
Sbjct: 189 TSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETAL 235
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/58 (20%), Positives = 27/58 (46%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 389
K++ G L + + +F VE+ +++ Q +GF F+T + + N ++
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIII 143
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 43.2 bits (97), Expect = 2e-04
Identities = 15/51 (29%), Positives = 34/51 (66%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 371
++VGG+ ++++ ++ FS++G I++V + DK + KGF F+ +E ++
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQR 88
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 134
+ T+ +L F YGEI +N+ D TG+S+GFAF+ ++ S
Sbjct: 46 DLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRS 89
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 43.2 bits (97), Expect = 2e-04
Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESIN-VKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK 179
+ T+ L++ F + G +ES ++ D + S GF + ++ + G H
Sbjct: 69 QVTEPLLQEIFTSTGPVESSKLIRKDKS---SYGFVHYFDRRSAALAILSLNGRHLFGQP 125
Query: 180 -KVD------PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 338
KV+ ++ + H IFVG LS E++D + FS F + + + +D+ + +
Sbjct: 126 IKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSR 185
Query: 339 GFCFITFESEQ 371
GF F++F ++Q
Sbjct: 186 GFGFVSFRNQQ 196
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/89 (28%), Positives = 46/89 (51%)
Frame = +3
Query: 153 AGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQ 332
AG H N D ++ + IFVGGL ++++++++ FS+FG ++ V++P
Sbjct: 310 AGGHGGNGSMSD---GESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG----- 361
Query: 333 RKGFCFITFESEQVVNDLLKTPKRTIGGK 419
KG F+ F + Q + + T+ GK
Sbjct: 362 -KGCGFVQFANRQSAEEAIGNLNGTVIGK 389
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 3 ETTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVF 119
+ +D L + F G Y ++ V D NTGRS+G+ F+ F
Sbjct: 223 DVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRF 262
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 43.2 bits (97), Expect = 2e-04
Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 21/142 (14%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV- 185
T+ +L F + + +N+ + T RG F+ E DKV+ ++ +NKK
Sbjct: 24 TEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVI----NSFHNKKTL 79
Query: 186 ----DPKKAKARHG----------------KIFVGGLSSEISDDEIRNFFSEFGTILEVE 305
P + K G K+FVG L +S+ E+++ FSE+GTI +++
Sbjct: 80 PGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQ 139
Query: 306 MPFDKTKNQRKGFCFITFESEQ 371
+ + KG F+ +ES++
Sbjct: 140 I-LRGSLQTSKGCLFLKYESKE 160
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
K+FVG + +++ ++ F EF + EV + +KT +G CF+T + + + ++ +
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 396 --PKRTIGG 416
K+T+ G
Sbjct: 73 FHNKKTLPG 81
Score = 31.5 bits (68), Expect = 0.62
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 182
E D+EL F +G++ S V D TG S+ F FI + + + + +T+N +
Sbjct: 349 EFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI----NTMNGCQ 404
Query: 183 VDPKKAKAR 209
+ KK K +
Sbjct: 405 LSGKKLKVQ 413
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 42.3 bits (95), Expect = 3e-04
Identities = 15/31 (48%), Positives = 25/31 (80%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMP 311
IFVGGL + ++DDE+++ F +FG +L V++P
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKIP 292
Score = 39.9 bits (89), Expect = 0.002
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Frame = +3
Query: 33 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV--------MAAGEHTINNKKVD 188
F GE S V + TG+S G+ FI F + ++V M + E T
Sbjct: 80 FAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQ 139
Query: 189 PKKAKARHGK------IFVGGLSSEISDDEIRNFFSE-FGTILEVEMPFDKTKNQRKGFC 347
+ R IFVG L+ E++D + + F +G++ ++ D+T + KG+
Sbjct: 140 AGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYG 199
Query: 348 FITFESE 368
F+ F E
Sbjct: 200 FVRFADE 206
Score = 35.5 bits (78), Expect = 0.038
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 3 ETTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVF 119
E TD L D F YG ++ V D TGRS+G+ F+ F
Sbjct: 164 EVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRF 203
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
KI V L S+D ++ FS FG I EV++ D+ + KG+ FI F S+ ++T
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIET 100
Query: 396 -PKRTIGGKEVDVKRATP 446
+R G+ + + A P
Sbjct: 101 MDRRMYNGRMIYIDIAKP 118
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 131
T++ L+ F A+GEI + + D RS+G+AFI F + +
Sbjct: 51 TSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQD 92
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +3
Query: 210 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 389
HG + V + + +E+R F FG + +V +P D Q +GF F+ F +
Sbjct: 46 HGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQ 105
Query: 390 KT-PKRTIGGKEVDV 431
++ +R+ G+E+ V
Sbjct: 106 RSMNRRSFAGREITV 120
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 15 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 119
+ELR+ F +G + + + D +G+ RGFAF+ F
Sbjct: 61 EELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 42.3 bits (95), Expect = 3e-04
Identities = 34/155 (21%), Positives = 69/155 (44%), Gaps = 8/155 (5%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK- 179
+ T+ L++ F G +ES + + S GF + + + G H
Sbjct: 64 QVTEPLLQEVFAGTGPVESCKLIRKEKS--SYGFVHYFDRRSAGLAILSLNGRHLFGQPI 121
Query: 180 KVD------PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKG 341
KV+ ++ + H IFVG LS E++D + FS + T + + +D+ + +G
Sbjct: 122 KVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRG 181
Query: 342 FCFITFESEQVVNDLL-KTPKRTIGGKEVDVKRAT 443
F F++F ++Q + + + +G +++ AT
Sbjct: 182 FGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWAT 216
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKT 395
++VGGL+ E+++ + F FG I +V+ P D+ + + F F+TF E E +
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 396 PKRTIGGKEVDVKRATP 446
+ G+ + V A P
Sbjct: 75 DGAELYGRVLTVNYALP 91
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 42.3 bits (95), Expect = 3e-04
Identities = 15/34 (44%), Positives = 26/34 (76%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDK 320
+FVGGL + ++DD ++N FS++G I+ V++P K
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGK 296
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 42.3 bits (95), Expect = 3e-04
Identities = 15/34 (44%), Positives = 26/34 (76%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDK 320
+FVGGL + ++DD ++N FS++G I+ V++P K
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGK 296
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 398
+++G +S +++++ FS G I ++ M DK GFCF+ F S + D +K
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYI 95
Query: 399 KRTI 410
TI
Sbjct: 96 SGTI 99
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 140
TT+++L + F GEI+ I + D NT GF F++F + E +
Sbjct: 45 TTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTE 89
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 41.9 bits (94), Expect = 4e-04
Identities = 14/58 (24%), Positives = 35/58 (60%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 392
+++G + +SD + + + G ++++ +P DK ++ KGF F +E+E++ + +K
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVK 66
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 40.7 bits (91), Expect = 0.001
Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 28/142 (19%)
Frame = +3
Query: 18 ELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV---- 185
++ + F GE+ + T+ + G RGF + F + E K + + +++
Sbjct: 312 DVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALEFHGRPLLGREIRLDI 371
Query: 186 -------------DPKKAKARHG-------KIFVGGLSSEISDDEIRN----FFSEFGTI 293
P+ R G KIFV G + +S+D+I+N FS G I
Sbjct: 372 AQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDASLSEDDIKNTLREHFSSCGEI 431
Query: 294 LEVEMPFDKTKNQRKGFCFITF 359
V +P D+ KG ++ F
Sbjct: 432 KNVSVPIDRDTGNSKGIAYLEF 453
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Frame = +3
Query: 129 ESIDKVMAAGEHTINNKKVDPKKAKARHGK-IFVGGLSSEISDDEIRNFFSEFGTILEVE 305
+S D M E + + P A K +F LS I ++ NFF E G +++V
Sbjct: 268 KSSDVEMVDAEKSSAKQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVR 327
Query: 306 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEV 425
++ +GF + F S + L+ R + G+E+
Sbjct: 328 FSTNRDDGSFRGFGHVEFASSEEAQKALEFHGRPLLGREI 367
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-------KAPESID-KVMAAGE 161
TT +L F YG++ + + D TG SRGFAF+ + KA E +D +V+ E
Sbjct: 27 TTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGRE 86
Query: 162 HTINNKKVDPKKAKARHGKI 221
T+ K P K G++
Sbjct: 87 ITVQFAKYGPNAEKISKGRV 106
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-------KAPESID-KVMAAGE 161
TT +L F YG++ + + D TG SRGFAF+ + KA E +D +V+ E
Sbjct: 27 TTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGRE 86
Query: 162 HTINNKKVDPKKAKARHGKI 221
T+ K P K G++
Sbjct: 87 ITVQFAKYGPNAEKISKGRV 106
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 389
K+++GGLS + +++ FS F + E + +K + +G+ F+ F SE N +
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 155
T + L+D F ++ + V T+ TGRSRG+ F+ F + +S + ++A
Sbjct: 42 TDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 40.3 bits (90), Expect = 0.001
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 25/131 (19%)
Frame = +3
Query: 3 ETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTIN 173
+ TD L + F A Y ++ V D TGRS+G+ F+ F + M G++ +
Sbjct: 183 DVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSS 242
Query: 174 ---------NKK---VDPKKAKARHGK----------IFVGGLSSEISDDEIRNFFSEFG 287
NKK + P + G IFVG + +++D++++ F +FG
Sbjct: 243 RPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFG 302
Query: 288 TILEVEMPFDK 320
++ V++P K
Sbjct: 303 ELVHVKIPAGK 313
Score = 36.3 bits (80), Expect = 0.022
Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 16/134 (11%)
Frame = +3
Query: 21 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK--------VMAAGEHT--I 170
L + FG GE + V + G S G+ FI F + ++ M + E +
Sbjct: 96 LMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRL 155
Query: 171 NNKKV---DPKKAKARHGKIFVGGLSSEISDDEIRNFFSE-FGTILEVEMPFDKTKNQRK 338
N ++ + ++A+ +FVG L+ +++D + F + ++ ++ D+T + K
Sbjct: 156 NWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSK 215
Query: 339 GFCFITF--ESEQV 374
G+ F+ F ESEQ+
Sbjct: 216 GYGFVRFADESEQI 229
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQV 374
+++G + + EI FFS+FGT+ V + +K + K F FI FE +V
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEV 113
Score = 36.7 bits (81), Expect = 0.016
Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 14/145 (9%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG--------EHT 167
+ E+ F +G ++ + V + TG+S+ F FI F+ PE + +AAG EH
Sbjct: 73 ETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAE--IAAGAMNDYLLMEHM 130
Query: 168 INNKKVDPKKAKARHGKIF------VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 329
+ ++P+ K + F V + E E +L+ + D+ +
Sbjct: 131 LKVHVIEPENVKPNLWRGFKCNFKPVDSVQIERRQLNKERTLEEHRKMLQKIVKKDQKRR 190
Query: 330 QRKGFCFITFESEQVVNDLLKTPKR 404
+R I +E ++V + PKR
Sbjct: 191 KRIEAAGIEYECPELVGNTQPVPKR 215
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 39.5 bits (88), Expect = 0.002
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 8/129 (6%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID---KVMAA----GE 161
+ +++ L + F G + ++ V D T + + FI +++ E D KV+ G+
Sbjct: 35 QLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGK 94
Query: 162 HTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL-EVEMPFDKTKNQRK 338
NK KK+ +F+G L ++ + + + FS FG I ++ D +
Sbjct: 95 PIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSR 154
Query: 339 GFCFITFES 365
GF FI+++S
Sbjct: 155 GFGFISYDS 163
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESI-NVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTIN 173
+ +K L D F A+G I S + DP+TG SRGF FI + + E+ D + + G++ N
Sbjct: 122 DVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSN 181
Query: 174 NK 179
+
Sbjct: 182 RQ 183
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/51 (29%), Positives = 32/51 (62%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 155
ET ++++ + FG +GEI+++N+ D +G +G+A I ++ E ++A
Sbjct: 105 ETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISA 155
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 371
I V G+ E +++I N F +FG I + + D+ KG+ I +E ++
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKE 147
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +3
Query: 135 IDKVMAAGEH-TINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 311
++K M A + +I + ++ AR +FVG + + +E++ F GT+ V +
Sbjct: 67 VEKEMGAQDPASIAANQAGKEEVDAR--SVFVGNVDYACTPEEVQQHFQTCGTVHRVTIL 124
Query: 312 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDV 431
DK Q KGF ++ F + V + L+ + + G+++ V
Sbjct: 125 TDKF-GQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKV 163
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 398
+FV G S +S+ ++ FSEFG + V++ ++ Q G+ ++ F S++ ++
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 138
Query: 399 K-RTIGGKEVDVKRATPTL 452
+ G+ + VK P L
Sbjct: 139 NGKFFDGRFILVKFGQPGL 157
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 3 ETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 152
+ TD L++ F Y + V TDP+TGRS+G+ F+ F ++ MA
Sbjct: 126 DVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/99 (22%), Positives = 46/99 (46%)
Frame = +3
Query: 135 IDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPF 314
++K M A + + K + ++VG + + +E++ F GT+ V +
Sbjct: 63 VEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILM 122
Query: 315 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDV 431
DK Q KGF ++ F + V + L+ + + G+++ V
Sbjct: 123 DKF-GQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKV 160
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/99 (22%), Positives = 46/99 (46%)
Frame = +3
Query: 135 IDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPF 314
++K M A + + K + ++VG + + +E++ F GT+ V +
Sbjct: 63 VEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILM 122
Query: 315 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDV 431
DK Q KGF ++ F + V + L+ + + G+++ V
Sbjct: 123 DKF-GQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKV 160
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKT 395
+++ L +++S++ + FS+FG ++ + D + + +GF FI FES + +L
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKD-FRGESRGFAFIEFESADSAGRAMLHM 77
Query: 396 PKRTIGGKEVDVKRATP 446
R IG K + V+R TP
Sbjct: 78 DGRLIGQKILCVQR-TP 93
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/84 (27%), Positives = 41/84 (48%)
Frame = +3
Query: 186 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 365
DP + +FV L+ E S+ +I+ F +G I V + D+ N+ KG+ FI
Sbjct: 129 DPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFI---- 184
Query: 366 EQVVNDLLKTPKRTIGGKEVDVKR 437
E + +K + G+++D +R
Sbjct: 185 EYMHTRDMKAAYKQADGQKIDGRR 208
Score = 34.3 bits (75), Expect = 0.088
Identities = 12/39 (30%), Positives = 27/39 (69%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 119
E+++ +++ F +YG I+ +++ TD T + +G+AFI +
Sbjct: 148 ESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 371
+FV G S +S+ ++ FSEFG + V++ ++ Q G+ ++ F S++
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKE 110
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 155
T+ ++R+ ++G + N+ D TG S+G+AF V++ P D AA
Sbjct: 387 TEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAA 435
Score = 35.5 bits (78), Expect = 0.038
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
+IFVGGL ++ +IR FG + + D+ KG+ F ++ V +
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAA 435
Query: 396 PKR-TIGGKEVDVKRA 440
+G K + V+RA
Sbjct: 436 LNGIKMGDKTLTVRRA 451
Score = 30.3 bits (65), Expect = 1.4
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Frame = +3
Query: 207 RHGK-IFVGGLSSEISDDEIRNFFSEFGTIL--EVEMPFDKTK----NQRKGFCFITFES 365
RH + ++VGGL ++ + FFS+ + + P D N K F F+ S
Sbjct: 252 RHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRS 311
Query: 366 EQVVNDLLKTPKRTIGGKEVDVKRAT---PTLLAT 461
+ ++ + + G V V+R T P+L AT
Sbjct: 312 VEEASNAMALDGIILEGVPVKVRRPTDYNPSLAAT 346
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 37.9 bits (84), Expect = 0.007
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 359
+FV GLS + + +R F++FG + + ++ D+ KGF F+ +
Sbjct: 58 LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRY 104
Score = 35.9 bits (79), Expect = 0.029
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 152
TT + LR F +GE+ V TD +G S+GF F+ + E K +A
Sbjct: 67 TTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/77 (23%), Positives = 35/77 (45%)
Frame = +3
Query: 150 AAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 329
A+ + + P + +++G L + DD + N FS FG I+ ++ D+
Sbjct: 459 ASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTG 518
Query: 330 QRKGFCFITFESEQVVN 380
KG+ F+ + Q+ N
Sbjct: 519 LSKGYGFVKYADVQMAN 535
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/77 (23%), Positives = 35/77 (45%)
Frame = +3
Query: 150 AAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 329
A+ + + P + +++G L + DD + N FS FG I+ ++ D+
Sbjct: 459 ASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTG 518
Query: 330 QRKGFCFITFESEQVVN 380
KG+ F+ + Q+ N
Sbjct: 519 LSKGYGFVKYADVQMAN 535
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP 191
++++R FG G ++SI + +TG+ RG A+ F E + +A KK+
Sbjct: 664 EEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISI 723
Query: 192 KKAKARHGK 218
++ + GK
Sbjct: 724 ARSNPKKGK 732
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP 191
++++R FG G ++SI + +TG+ RG A+ F E + +A KK+
Sbjct: 664 EEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISI 723
Query: 192 KKAKARHGK 218
++ + GK
Sbjct: 724 ARSNPKKGK 732
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 37.5 bits (83), Expect = 0.009
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +3
Query: 231 GLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RT 407
GLS+ +D +R F+ F +++ D+ + KGF FITFESE LK +
Sbjct: 77 GLSAYTTDQSLRQLFAPFARLIK-----DQQTQRPKGFGFITFESEDDAQKALKALNGKI 131
Query: 408 IGGKEVDVKRA 440
+ G+ + V+ A
Sbjct: 132 VNGRLIFVETA 142
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 143
TDK+L HF G++ S + +P T SRGFAF+ + + ++
Sbjct: 84 TDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 128
Score = 31.5 bits (68), Expect = 0.62
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 365
++V GLS+ ++D ++ F++ G + + + +GF F+T S
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSS 122
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 143
TDK+L HF G++ S + +P T SRGFAF+ + + ++
Sbjct: 83 TDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 127
Score = 31.5 bits (68), Expect = 0.62
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 365
++V GLS+ ++D ++ F++ G + + + +GF F+T S
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSS 121
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
++F G L +E++DD + F+ F T ++ DK + KG+ F++F + + LK
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKE 197
Query: 396 PK-RTIGGKEVDVKRAT 443
+ +G + + +++++
Sbjct: 198 MNGKYVGNRPIKLRKSS 214
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 37.5 bits (83), Expect = 0.009
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Frame = +3
Query: 138 DKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 317
+K +A E T +K + + K+FV L +S ++I F + GT+ VE+
Sbjct: 70 EKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQ 129
Query: 318 KTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEVDVKRA 440
K + +GF F+T S E+ + K + G+ + V A
Sbjct: 130 K-DGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFA 170
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/80 (25%), Positives = 39/80 (48%)
Frame = +3
Query: 192 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 371
+K + I+VG + + +E++ F GT+ V + DK Q KGF ++ F +
Sbjct: 96 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEVE 154
Query: 372 VVNDLLKTPKRTIGGKEVDV 431
V + L + + G+++ V
Sbjct: 155 AVQNSLILNESELHGRQIKV 174
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 36.7 bits (81), Expect = 0.016
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 186 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK-GFCFITFE 362
+P++ + GKIFVG L + I E FF +FG I V + + ++ GF FI +
Sbjct: 156 NPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYA 215
Query: 363 SEQ 371
+E+
Sbjct: 216 AEK 218
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 36.7 bits (81), Expect = 0.016
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = +3
Query: 3 ETTDKE-LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI--- 170
E D+E LR F + I+ + + D T SRGFAF+ F + E K + A T
Sbjct: 467 EDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTALER 526
Query: 171 NNKKVDPKKAKARHG 215
N K + AK+ HG
Sbjct: 527 NGKILRVAYAKSVHG 541
Score = 35.5 bits (78), Expect = 0.038
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 164
++T+++L +G + + V + N+G SRGFAFI F ++ +M EH
Sbjct: 308 KSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEH 361
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/80 (20%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF---ESEQVVNDLL 389
+ V GLS + +++++ +E+G + V + ++ +GF FI F ++ + + D +
Sbjct: 300 VVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRI 359
Query: 390 KTPKRTIGGKEVDVKRATPT 449
+ + G+++ + PT
Sbjct: 360 EHDGIVLDGRKLMFHYSQPT 379
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 36.3 bits (80), Expect = 0.022
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
+IFVGGL ++ ++R FG + ++ D+ KG+ F ++ + V D+
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ-DLSVTDIACA 418
Query: 396 PKRTI--GGKEVDVKRA 440
I G K + V+RA
Sbjct: 419 ALNGIKMGDKTLTVRRA 435
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 155
T+ ++R+ ++G ++ ++ D TG S+G+AF V++ D AA
Sbjct: 371 TESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
Score = 29.9 bits (64), Expect = 1.9
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Frame = +3
Query: 207 RHGK-IFVGGLSSEISDDEIRNFFSEFGTIL--EVEMPFDKTK----NQRKGFCFITFES 365
RH + ++VGGLS ++ + FFS+ + P D N K F F+ S
Sbjct: 236 RHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRS 295
Query: 366 EQVVNDLLKTPKRTIGGKEVDVKRAT---PTLLAT 461
+ ++ + G V V+R + P+L AT
Sbjct: 296 VEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAAT 330
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 36.3 bits (80), Expect = 0.022
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
+IFVGGL ++ ++R FG + ++ D+ KG+ F ++ + V D+
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ-DLSVTDIACA 418
Query: 396 PKRTI--GGKEVDVKRA 440
I G K + V+RA
Sbjct: 419 ALNGIKMGDKTLTVRRA 435
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 155
T+ ++R+ ++G ++ ++ D TG S+G+AF V++ D AA
Sbjct: 371 TESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
Score = 29.9 bits (64), Expect = 1.9
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Frame = +3
Query: 207 RHGK-IFVGGLSSEISDDEIRNFFSEFGTIL--EVEMPFDKTK----NQRKGFCFITFES 365
RH + ++VGGLS ++ + FFS+ + P D N K F F+ S
Sbjct: 236 RHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRS 295
Query: 366 EQVVNDLLKTPKRTIGGKEVDVKRAT---PTLLAT 461
+ ++ + G V V+R + P+L AT
Sbjct: 296 VEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAAT 330
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 36.3 bits (80), Expect = 0.022
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
+IFVGGL ++ ++R FG + ++ D+ KG+ F ++ + V D+
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ-DLSVTDIACA 418
Query: 396 PKRTI--GGKEVDVKRA 440
I G K + V+RA
Sbjct: 419 ALNGIKMGDKTLTVRRA 435
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 155
T+ ++R+ ++G ++ ++ D TG S+G+AF V++ D AA
Sbjct: 371 TESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
Score = 29.9 bits (64), Expect = 1.9
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Frame = +3
Query: 207 RHGK-IFVGGLSSEISDDEIRNFFSEFGTIL--EVEMPFDKTK----NQRKGFCFITFES 365
RH + ++VGGLS ++ + FFS+ + P D N K F F+ S
Sbjct: 236 RHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRS 295
Query: 366 EQVVNDLLKTPKRTIGGKEVDVKRAT---PTLLAT 461
+ ++ + G V V+R + P+L AT
Sbjct: 296 VEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAAT 330
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 152
T L HF +GE+ + TDP TG+ G A+I F E+ + ++
Sbjct: 528 TKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS 575
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 389
IFV + + D + F++FG +L+ + D Q G +I F ++ + L
Sbjct: 518 IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENAL 574
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 35.9 bits (79), Expect = 0.029
Identities = 21/53 (39%), Positives = 33/53 (62%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 161
ETT+ +L + FG YG+I+ I V + SRGFAFI ++ +++ +AA E
Sbjct: 28 ETTESDLTELFGRYGDIDRITVYS------SRGFAFIYYR---HVEEAVAAKE 71
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTI 293
++VGG+ +S D++ FS+FG I
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKI 276
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 35.9 bits (79), Expect = 0.029
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +3
Query: 192 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 365
KKA + V LS +++ ++ F FG ++ VE+ D+ N +G ++ F++
Sbjct: 91 KKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKA 148
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP 191
+ L++ FG +GE+ + + D RG ++ FKA +K + ++ ++D
Sbjct: 111 EAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK----AQLYMDGAQIDG 166
Query: 192 KKAKA 206
K KA
Sbjct: 167 KVVKA 171
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 35.9 bits (79), Expect = 0.029
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +3
Query: 192 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 365
KKA + V LS +++ ++ F FG ++ VE+ D+ N +G ++ F++
Sbjct: 91 KKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKA 148
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP 191
+ L++ FG +GE+ + + D RG ++ FKA +K + ++ ++D
Sbjct: 111 EAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK----AQLYMDGAQIDG 166
Query: 192 KKAKA 206
K KA
Sbjct: 167 KVVKA 171
>At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing
protein contains Pfam profile:PF00076 RNA recognition
motif
Length = 602
Score = 35.5 bits (78), Expect = 0.038
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +3
Query: 240 SEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 389
S +D+++ N+F FG + +V +P+ Q++ F F+TF + V +L
Sbjct: 328 SSFTDEDVSNYFGNFGPVQDVRIPY----QQKRMFGFVTFLHSETVRIIL 373
Score = 32.7 bits (71), Expect = 0.27
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKK- 182
TD+++ ++FG +G ++ + + + R F F+ F E++ ++A G H I + +
Sbjct: 331 TDEDVSNYFGNFGPVQDVRIPYQ----QKRMFGFVTFLHSETVRIILARGNPHFICDSRV 386
Query: 183 -VDPKKAKAR 209
V P K K R
Sbjct: 387 LVKPYKEKGR 396
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 35.1 bits (77), Expect = 0.050
Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 36/180 (20%)
Frame = +3
Query: 15 KELRDHFGAYGEIESINVKTDP-----------------NTGRSRGFAFIVFKAPESIDK 143
K + F +GE+ES+ +++ P N S A++VF+ +S
Sbjct: 185 KVILKEFSKFGEVESVRIRSVPIVDSKRTRKGAIMLKQINEKASSVHAYVVFETEQSAAA 244
Query: 144 VMAAGEHTI--NNKKVD----PKKAKARHGK---------IFVGGLSSEISDDEIRNFF- 275
+A I N+ +VD P+K + H +F+G L ++ D+E+ F
Sbjct: 245 SLAHNMSLIDGNHVRVDRACPPRKKQKGHDDTHLYDPKRTVFMGNLPFDVKDEEVYQLFT 304
Query: 276 --SEFGTILE-VEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATP 446
S +E V + D N KG ++ F++ + N +LK + +E+ + R P
Sbjct: 305 GKSNLENSIEAVRVIRDPHLNIGKGIAYVLFKTREAANLVLKKGYLKLRERELRISRVKP 364
Score = 30.7 bits (66), Expect = 1.1
Identities = 29/102 (28%), Positives = 39/102 (38%), Gaps = 17/102 (16%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEV---EMPFDKTKNQRKG--------------FC 347
+FVG L ++ I FS+FG + V +P +K RKG
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVPIVDSKRTRKGAIMLKQINEKASSVHA 232
Query: 348 FITFESEQVVNDLLKTPKRTIGGKEVDVKRATPTLLATATHD 473
++ FE+EQ L I G V V RA P HD
Sbjct: 233 YVVFETEQSAAASLAHNMSLIDGNHVRVDRACPPRKKQKGHD 274
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 34.7 bits (76), Expect = 0.066
Identities = 14/72 (19%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE-SEQVVNDLLKT 395
+ + L + +++R+ F FG + ++ +P + + +GF F+ + +E + +
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108
Query: 396 PKRTIGGKEVDV 431
+ IGG+E+ +
Sbjct: 109 NHKVIGGREIAI 120
Score = 34.7 bits (76), Expect = 0.066
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +3
Query: 18 ELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 170
+LRD F +G ++ I + + TG RGF F+ ++ E + M H +
Sbjct: 62 DLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKV 112
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 34.7 bits (76), Expect = 0.066
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 149
+T + +L + F +G + + V D TG SRGF F+ F + E + +
Sbjct: 223 DTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAI 271
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +3
Query: 225 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 371
V LS + + ++ F FG + V + D+ +GF F+ F S +
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSRE 265
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 34.7 bits (76), Expect = 0.066
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESI----NVKTDPNTGRSRGFAFIVFK 122
E TD L D F A+ S V D TGRSRGF F+ F+
Sbjct: 158 EVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFR 201
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 34.3 bits (75), Expect = 0.088
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 188
++++ D+F +G ++ + + + R F F+ F PE++ ++A G H + + +V
Sbjct: 169 EEDVSDYFSTFGPVQDVRIPYQ----QKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVL 224
Query: 189 PKKAKARHGKI 221
K K + GK+
Sbjct: 225 VKPYKEK-GKV 234
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 34.3 bits (75), Expect = 0.088
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 359
+FVG L +D EI + S++G + E++ ++ + KG+C + F
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEF 250
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 119
TTD E+ YG ++ I + +G+S+G+ + F
Sbjct: 213 TTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEF 250
>At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 130
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 338
+FV G S +S+ ++ FSEFG + E F +KN RK
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTN-EHYFSGSKNHRK 98
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 170
TT+ LR+ YG I+++ + TG SRG+ F+ ++ + + + H++
Sbjct: 75 TTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSL 129
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 45 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 152
G ++++ V TDP T +G AF+ F ES+ K +A
Sbjct: 469 GAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAVA 504
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 21 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 170
L +F ++GEI + V TG S G+A+I K E +K + G H +
Sbjct: 254 LSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLK--EGAEKALELGRHDV 301
>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 552
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +3
Query: 240 SEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 389
S D+++ +FS FGT+ +V +P+ Q++ F F++F + V +L
Sbjct: 269 STFKDEDVATYFSLFGTVQDVRIPY----QQKRMFGFVSFAHPETVKVVL 314
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 188
D+++ +F +G ++ + + + R F F+ F PE++ V+A G H I + +V
Sbjct: 273 DEDVATYFSLFGTVQDVRIPYQ----QKRMFGFVSFAHPETVKVVLARGNPHFICDSRVL 328
Query: 189 PKKAKARHGKI 221
K K + GK+
Sbjct: 329 VKPYKEK-GKV 338
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINN 176
T+ ++ F +G++ + V D +T +SRG AF+++ + E K + + I N
Sbjct: 69 TNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMDAKILN 124
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 33.1 bits (72), Expect = 0.20
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 392
++ VGGL + D++ FS GT+ VE F +TK + F +I F S N L K
Sbjct: 11 RLHVGGLGESVGRDDLLKIFSPMGTVDAVE--FVRTKG--RSFAYIDF-SPSSTNSLTK 64
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 33.1 bits (72), Expect = 0.20
Identities = 11/51 (21%), Positives = 28/51 (54%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 371
+FVG + + +++++R E G ++ + D+ + KG+ F ++ E+
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEE 61
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 131
T++ LRD F GEI + +K + G+SR FA+I F+ +
Sbjct: 15 TEERLRDVFSRKGEIADVKLKR-KSDGKSRQFAYIGFRTEQ 54
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +3
Query: 237 SSEISDDEIRNFFSEFGTILEVEMPFDKTKNQ-RKGFCFITFESEQVVNDLLKTPKRTIG 413
S ++ +++ +FFS++G + V MP +++ G + F +E+ +++K
Sbjct: 124 SYDVKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQNVMK-QNLVFA 182
Query: 414 GKEVDVK 434
G+E+++K
Sbjct: 183 GQELELK 189
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 398
++VG + ++ FS+FG + V+M + G+ F+ FE E+ D ++
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDM--------KSGYAFVYFEDERDAEDAIRRT 55
Query: 399 KRTIGG 416
T G
Sbjct: 56 DNTTFG 61
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 32.7 bits (71), Expect = 0.27
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +3
Query: 177 KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFC--F 350
KK D K + IFV L ++ F +FG I E + ++ C F
Sbjct: 268 KKNDQKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKENGIQVRSSRGNANPVCFGF 327
Query: 351 ITFESEQVVNDLLKTPKRT 407
I+FE+ V +L+ K T
Sbjct: 328 ISFETVASVQSVLQAAKNT 346
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 32.7 bits (71), Expect = 0.27
Identities = 27/125 (21%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Frame = +3
Query: 21 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTINNKKVDPK 194
++ F ++ S+ + + + G+ G+ F+ F + +K + GE+ N+K + K
Sbjct: 174 IKGFFNGVAQVVSVRLVVN-HEGKHVGYGFVEFASAYGANKALEEKNGEYLHNHKILLMK 232
Query: 195 --------KAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF 350
+ A +FV L I +I NFF + G ++ V + ++ + G+ F
Sbjct: 233 GHESPGFAEEAAITKTLFVANLRDSIQISDIINFFKDVGEVVHVRL-IVNSQGKHAGWGF 291
Query: 351 ITFES 365
+ F S
Sbjct: 292 VEFAS 296
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 32.3 bits (70), Expect = 0.35
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +3
Query: 174 NKKVDPKKAKARHGK--IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFC 347
++K ++RH + + V LS + ++ F FG + + D+ + +GF
Sbjct: 159 DRKAGGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFG 218
Query: 348 FITFESEQ 371
F++F S +
Sbjct: 219 FVSFVSRE 226
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 149
+T +L + F +G + +V D T SRGF F+ F + E + +
Sbjct: 184 DTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAI 232
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 32.3 bits (70), Expect = 0.35
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKT 395
I++G +++ + +D + + G + D T + KGF F FES E ++ +
Sbjct: 206 IYIGKIAT-VENDFMMSILEFCGHVKSCLRAEDPTTKKPKGFGFYEFESAEGILRAIRLL 264
Query: 396 PKRTIGGKE--VDVKRATPTLL 455
+RTI G+E V+V +AT L
Sbjct: 265 TQRTIDGQELLVNVNQATKEYL 286
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 371
+FV L+ D+++ FS FGT++ ++ D + FI FE+++
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKE 295
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 188
++++ ++F +G ++ + + + R F F+ F PE++ ++A G H + + +V
Sbjct: 272 EEDVSNYFSTFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVL 327
Query: 189 PKKAKARHGKI 221
K K + GK+
Sbjct: 328 VKPYKEK-GKV 337
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/69 (27%), Positives = 36/69 (52%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP 191
++++RD F A+GEIESI + D + AF+ + + E +K A + N ++
Sbjct: 241 EQDIRDQFYAHGEIESIRILAD------KACAFVTYTSREGAEK---AAQELSNRLVING 291
Query: 192 KKAKARHGK 218
++ K G+
Sbjct: 292 QRLKLTWGR 300
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 31.5 bits (68), Expect = 0.62
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +3
Query: 156 GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQR 335
GE NN + + + + VG +SS + D E++ F +FG I + T +
Sbjct: 198 GERGGNNSVGELNRGEIPSRTLLVGNISSNVEDYELKVLFEQFGDIQALH-----TACKN 252
Query: 336 KGFCFITF-ESEQVVNDLLKTPKRTIGGKEVDVK 434
+GF +++ + N + + G ++D++
Sbjct: 253 RGFIMVSYCDIRAAQNAARALQNKLLRGTKLDIR 286
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 31.5 bits (68), Expect = 0.62
Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Frame = +3
Query: 69 KTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG-----KIFVGG 233
+ +PN +R + KAPES G +++ D + ++ G K+++
Sbjct: 40 RNNPNRKSTRSAPYQSAKAPES-----TWGHDMFSDRSEDHRSGRSSAGIETGTKLYISN 94
Query: 234 LSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 359
L + +++I+ F+E G + + FD++ + KG + +
Sbjct: 95 LDYGVMNEDIKELFAEVGELKRYTVHFDRS-GRSKGTAEVVY 135
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 31.5 bits (68), Expect = 0.62
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 359
+FVG L +D E+ ++G + EV+ +K + KG+C + F
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEF 282
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 128
TTD EL YG ++ + + +G+S+G+ + F P
Sbjct: 245 TTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDP 285
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 31.5 bits (68), Expect = 0.62
Identities = 22/89 (24%), Positives = 34/89 (38%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
KIF+GG S IS + + S FG + + NQR F T + +
Sbjct: 41 KIFIGGFSKAISSEMLMEIVSVFGPLKAYRFVSNNDLNQRCAFLEYT-DGSVTLKACAGL 99
Query: 396 PKRTIGGKEVDVKRATPTLLATATHDTLP 482
+GG + A P + A ++ P
Sbjct: 100 NGMRLGGSVITAVCAFPDASSVAVNENPP 128
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 31.5 bits (68), Expect = 0.62
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP 191
++++RD F A+GEIESI + + + AF+ + E +K A E N V+
Sbjct: 241 EQDIRDQFYAHGEIESIRILAE------KACAFVTYTTREGAEK---AAEELSNRLVVNG 291
Query: 192 KKAKARHGK 218
++ K G+
Sbjct: 292 QRLKLTWGR 300
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 31.5 bits (68), Expect = 0.62
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 359
+ V L + +++R F +FG + ++ +P D +GF F+ F
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQF 84
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 359
+ V L + +++R F +FG + ++ +P D +GF FI F
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQF 85
>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 428
Score = 31.1 bits (67), Expect = 0.82
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 398
IFV L + + +++ F FG I + + + + F F+TF S + V +L+
Sbjct: 279 IFVANLLMDATPEQLNETFKGFGAITKDGIQVRSYRLKGNCFGFVTFASAEAVKLVLQAH 338
Query: 399 KRT---IGGKEVDVK 434
K + IG + V ++
Sbjct: 339 KESAIRIGNRRVSIE 353
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +3
Query: 222 FVGGLSSEISDDEIRNFFSEFGTILEVEMPF 314
+VG L S+ +++++N FS+FG ++ + F
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVIHSNVRF 41
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTD 77
++++ DHF AYGE+ESI V +
Sbjct: 238 EQDIHDHFYAYGEMESIRVMAE 259
>At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 193
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +3
Query: 12 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 149
++++RDHF YGEIESI + P+ G AF+ + + +K M
Sbjct: 91 EQDIRDHFCPYGEIESIVI--FPHRGGGT-CAFLTYTTRLAAEKAM 133
>At1g67950.3 68414.m07762 RNA recognition motif (RRM)-containing
protein
Length = 279
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/80 (22%), Positives = 37/80 (46%)
Frame = +3
Query: 132 SIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 311
S+ + T +N +D + + + + +S +S +++ FFS G I VEM
Sbjct: 2 SVTAAFIDSDQTQHNILMDSQSTVSGVKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEM- 60
Query: 312 FDKTKNQRKGFCFITFESEQ 371
+++ Q ++TF+ Q
Sbjct: 61 --RSETQESQVAYVTFKDSQ 78
>At1g67950.1 68414.m07761 RNA recognition motif (RRM)-containing
protein
Length = 278
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/80 (22%), Positives = 37/80 (46%)
Frame = +3
Query: 132 SIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 311
S+ + T +N +D + + + + +S +S +++ FFS G I VEM
Sbjct: 2 SVTAAFIDSDQTQHNILMDSQSTVSGVKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEM- 60
Query: 312 FDKTKNQRKGFCFITFESEQ 371
+++ Q ++TF+ Q
Sbjct: 61 --RSETQESQVAYVTFKDSQ 78
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 398
I+V L + + ++ F FG I + K Q F F+ FE+ L+
Sbjct: 295 IYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFCFGFVEFETSSGKQSALEAS 354
Query: 399 KRTIGGKEVDVK 434
TIG ++ V+
Sbjct: 355 PVTIGDRQAVVE 366
>At4g16810.1 68417.m02538 expressed protein similar to vernalization
2 protein [Arabidopsis thaliana] GI:16945788, embryonic
flower 2 [Arabidopsis thaliana] GI:14276050,
fertilization-independent seed 2 protein [Arabidopsis
thaliana] GI:4185499
Length = 623
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +1
Query: 160 NTPSTTRK*TQRRLKHDMGRFLSEDSAVKSQM---MKSETSSVNLELS*KWRCPLTKQR 327
NT + + + LK G +E+ K ++ M ++ SSV E++ KWRCP +R
Sbjct: 547 NTEVLVKCSSSKELKTKAGEDNTEEREKKRRVLGEMSNQLSSVAKEIAGKWRCPQKNKR 605
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 3 ETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 131
+TT E+ + F YG IE I + D + RG+AF+ F E
Sbjct: 217 QTTKMEVNEVFSRYGIIEDIYMALD-DMKICRGYAFVQFSCKE 258
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 29.9 bits (64), Expect = 1.9
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 188
++ EL FGAYGEI I + PN R + + E+ K + E I K +
Sbjct: 282 SNDELLQLFGAYGEIREI--RETPNRRFHRFIEYYDVRDAETALKALNRSE--IGGKCI- 336
Query: 189 PKKAKARHG---KIFVGGLSSEISDDEIRNFFSEFGT 290
K +R G ++ V S ++ E+ NF+++ G+
Sbjct: 337 -KLELSRPGGARRLSVPSQSQDLERTEVTNFYNQVGS 372
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 29.9 bits (64), Expect = 1.9
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 188
++ EL FGAYGEI I + PN R + + E+ K + E I K +
Sbjct: 295 SNDELLQLFGAYGEIREI--RETPNRRFHRFIEYYDVRDAETALKALNRSE--IGGKCI- 349
Query: 189 PKKAKARHG---KIFVGGLSSEISDDEIRNFFSEFGT 290
K +R G ++ V S ++ E+ NF+++ G+
Sbjct: 350 -KLELSRPGGARRLSVPSQSQDLERTEVTNFYNQVGS 385
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = +3
Query: 183 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE 362
+ K+A R +FV L E I +FF + G ++ V++ K + G F+ F
Sbjct: 117 ISVKEAAVREKTLFVANLPYETKIPNIIDFFKKVGEVVRVQL-IVNLKGKLVGCGFVEFA 175
Query: 363 SEQVVNDLLK 392
S + L+
Sbjct: 176 SVNEAEEALQ 185
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +3
Query: 207 RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 365
R +FV LS + I NFF + G ++ V + + T + G F+ F S
Sbjct: 357 RKKTLFVAHLSRKTEITHIINFFKDVGEVVHVRLILNHT-GKHVGCAFVEFGS 408
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 392
+++VG L +++ E+ + F FG I V + + G+ F+ FE + D ++
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWV-----ARRPPGYAFLDFEDSRDARDAIR 56
>At1g67950.2 68414.m07760 RNA recognition motif (RRM)-containing
protein
Length = 279
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/71 (23%), Positives = 35/71 (49%)
Frame = +3
Query: 159 EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 338
+ T +N +D + + + + +S +S +++ FFS G I VEM +++ Q
Sbjct: 12 DQTQHNILMDSQSTVSGVKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEM---RSETQES 68
Query: 339 GFCFITFESEQ 371
++TF+ Q
Sbjct: 69 QVAYVTFKDSQ 79
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 29.1 bits (62), Expect = 3.3
Identities = 33/147 (22%), Positives = 51/147 (34%), Gaps = 9/147 (6%)
Frame = +3
Query: 21 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 200
L HF + GEI I V D + +F+ K + DK + + V K
Sbjct: 44 LTKHFASCGEITQIYVPRDFKKKILKSVSFMWIKGEGAEDKALQLSGTDVGGWTVIVKPK 103
Query: 201 KARHGKIFVGGLSSEISDDEIRNF---------FSEFGTILEVEMPFDKTKNQRKGFCFI 353
+ +S E D ++ + F G I V +P D + K F+
Sbjct: 104 PKHEPPSPITTISVEGYDTSLQKYLLELILEKHFDSCGEIRHVYVPTDYERGVLKSVAFL 163
Query: 354 TFESEQVVNDLLKTPKRTIGGKEVDVK 434
E E + L+ + G V VK
Sbjct: 164 RIEGEGAEDKALQLSGTDVVGWTVIVK 190
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 167
T ++L HF YG+I ++ ++ R FAFI ++A E + + A ++
Sbjct: 68 TRTRDLEKHFEPYGKIVNVRIR--------RNFAFIQYEAQEDATRALDASNNS 113
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 167
T ++L HF YG+I ++ ++ R FAFI ++A E + + A ++
Sbjct: 109 TRTRDLEKHFEPYGKIVNVRIR--------RNFAFIQYEAQEDATRALDASNNS 154
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 188
++++L + FG YGEI+ I + PN R F+ F S D + A +N ++
Sbjct: 234 SNRDLENIFGVYGEIKEI--RETPN---KRHHKFVEFFDVRSADAALKA----LNRTEIA 284
Query: 189 PKKAKARHGK 218
K+ K H +
Sbjct: 285 GKRIKLEHSR 294
>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 422
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/83 (19%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +3
Query: 195 KAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQV 374
K +A+ IFV L + + +++ F FG I + + ++ F+ FE+ +
Sbjct: 269 KPQAQGSSIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKKNCIGFVAFENGEA 328
Query: 375 VNDLLKTPKRT---IGGKEVDVK 434
V ++ + + + IG + ++
Sbjct: 329 VKNVFQAHRESPIRIGNRRASIE 351
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 9 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 128
T++EL D F A+G + S+ V P G+AF+ F+ P
Sbjct: 14 TERELEDEFRAFGVVRSVWVARRP-----PGYAFLDFEDP 48
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/59 (22%), Positives = 29/59 (49%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 392
+++VG L +++ E+ + F FG + V + + G+ F+ FE + D ++
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWV-----ARRPPGYAFLDFEDPRDARDAIR 56
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/66 (22%), Positives = 31/66 (46%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
+++VG L +++ E+ + F FG + V + + G+ F+ F+ E+ D +
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWV-----ARRPPGYAFLEFDDERDALDAISA 57
Query: 396 PKRTIG 413
R G
Sbjct: 58 LDRKNG 63
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/66 (22%), Positives = 31/66 (46%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 395
+++VG L +++ E+ + F FG + V + + G+ F+ F+ E+ D +
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWV-----ARRPPGYAFLEFDDERDALDAISA 57
Query: 396 PKRTIG 413
R G
Sbjct: 58 LDRKNG 63
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 338
++VG LS ++ ++ + F FG I V++ + +T +++
Sbjct: 181 LYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKR 220
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +3
Query: 219 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT- 395
+FV + S I D E+ F +FG + + T + +GF +++ + +
Sbjct: 213 LFVRNVDSSIEDCELGVLFKQFGDVRALH-----TAGKNRGFIMVSYYDIRAAQKAARAL 267
Query: 396 PKRTIGGKEVDVKRATP 446
R + G+++D++ + P
Sbjct: 268 HGRLLRGRKLDIRYSIP 284
>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
protein contains Pfam domain PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 461
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 21 LRDHFGAYGEIESINVKTDPNTGRSRGF 104
L HF GEI + V +P+TG +GF
Sbjct: 364 LSKHFSVCGEITRVFVPRNPSTGAIKGF 391
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 317
+++VG LSS ++ FS +G + +V+M D
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD 45
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 216 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 317
+++VG LSS ++ FS +G + +V+M D
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD 45
>At1g04950.2 68414.m00493 TATA box-binding protein-associated factor
(TAF) family protein contains Pfam profile: PF02969 TATA
box binding protein associated factor
Length = 549
Score = 28.3 bits (60), Expect = 5.8
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +3
Query: 165 TINNKKVDPKKAKARH-GKI-FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 338
T+ N +DPKKA +H G I + L + I + + ++LE E+ +K KNQ K
Sbjct: 310 TLVNALLDPKKALTQHYGAIQGLAALGHTVVRLLILSNLEPYLSLLEPELNAEKQKNQMK 369
Query: 339 GFCFITFESEQVVNDLLKTPKRTIGGK 419
+E+ +V LL+ I G+
Sbjct: 370 -----IYEAWRVYGALLRAAGLCIHGR 391
>At1g04950.1 68414.m00492 TATA box-binding protein-associated factor
(TAF) family protein contains Pfam profile: PF02969 TATA
box binding protein associated factor
Length = 549
Score = 28.3 bits (60), Expect = 5.8
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +3
Query: 165 TINNKKVDPKKAKARH-GKI-FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 338
T+ N +DPKKA +H G I + L + I + + ++LE E+ +K KNQ K
Sbjct: 310 TLVNALLDPKKALTQHYGAIQGLAALGHTVVRLLILSNLEPYLSLLEPELNAEKQKNQMK 369
Query: 339 GFCFITFESEQVVNDLLKTPKRTIGGK 419
+E+ +V LL+ I G+
Sbjct: 370 -----IYEAWRVYGALLRAAGLCIHGR 391
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 155
T ++L HF YG+I ++ ++ R FAFI ++A E + + A
Sbjct: 108 TRTRDLERHFEPYGKIVNVRIR--------RNFAFIQYEAQEDATRALDA 149
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 6 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 155
T ++L HF YG+I ++ ++ R FAFI ++A E + + A
Sbjct: 108 TRTRDLERHFEPYGKIVNVRIR--------RNFAFIQYEAQEDATRALDA 149
>At4g24420.1 68417.m03501 RNA recognition motif (RRM)-containing
protein RRM, RNA recognition motif
Length = 87
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +3
Query: 21 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 185
L +HF + G I ++ + P T G A I ++ +KVM + +K+
Sbjct: 5 LTNHFKSCGVIAMVSFRRHPETDVVNGLATITMMGNDADEKVMLLNGSELGGRKL 59
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,362,915
Number of Sequences: 28952
Number of extensions: 306781
Number of successful extensions: 1288
Number of sequences better than 10.0: 221
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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